[INFO] updating cached repository https://github.com/10XGenomics/bamtofastq
[INFO] running `"git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "-c" "remote.origin.fetch=refs/heads/*:refs/heads/*" "fetch" "origin" "--force" "--prune"`
[INFO] running `"git" "rev-parse" "HEAD"`
[INFO] [stdout] b4445cf3631e7d2e86c12076888b8bad194b266c
[INFO] testing 10XGenomics/bamtofastq against beta-2020-06-03 for beta-1.45-1
[INFO] running `"git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F10XGenomics%2Fbamtofastq" "/workspace/builds/worker-12/source"`
[INFO] [stderr] Cloning into '/workspace/builds/worker-12/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/10XGenomics/bamtofastq on toolchain beta-2020-06-03
[INFO] running `"/workspace/cargo-home/bin/cargo" "+beta-2020-06-03" "read-manifest" "--manifest-path" "Cargo.toml"`
[INFO] started tweaking git repo https://github.com/10XGenomics/bamtofastq
[INFO] finished tweaking git repo https://github.com/10XGenomics/bamtofastq
[INFO] tweaked toml for git repo https://github.com/10XGenomics/bamtofastq written to /workspace/builds/worker-12/source/Cargo.toml
[INFO] crate git repo https://github.com/10XGenomics/bamtofastq already has a lockfile, it will not be regenerated
[INFO] running `"/workspace/cargo-home/bin/cargo" "+beta-2020-06-03" "fetch" "--locked" "--manifest-path" "Cargo.toml"`
[INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-06-03" "build" "--frozen"`
[INFO] [stdout] d9f679c25c11159499da4494b108a6ff880d55a8302799e81be968e21fdc67d2
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `"docker" "start" "-a" "d9f679c25c11159499da4494b108a6ff880d55a8302799e81be968e21fdc67d2"`
[INFO] [stderr] sudo: setrlimit(RLIMIT_CORE): Operation not permitted
[INFO] [stderr]    Compiling serde v1.0.105
[INFO] [stderr]    Compiling regex-syntax v0.6.17
[INFO] [stderr]    Compiling glob v0.3.0
[INFO] [stderr]    Compiling bindgen v0.53.2
[INFO] [stderr]    Compiling bytecount v0.4.0
[INFO] [stderr]    Compiling rustc-hash v1.1.0
[INFO] [stderr]    Compiling shlex v0.1.1
[INFO] [stderr]    Compiling strsim v0.9.3
[INFO] [stderr]    Compiling min-max-heap v1.3.0
[INFO] [stderr]    Compiling ieee754 v0.2.6
[INFO] [stderr]    Compiling linear-map v1.2.0
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling backtrace-sys v0.1.34
[INFO] [stderr]    Compiling libz-sys v1.0.25
[INFO] [stderr]    Compiling libloading v0.5.2
[INFO] [stderr]    Compiling openssl-sys v0.9.54
[INFO] [stderr]    Compiling curl-sys v0.4.30+curl-7.69.1
[INFO] [stderr]    Compiling bzip2-sys v0.1.8+1.0.8
[INFO] [stderr]    Compiling lzma-sys v0.1.15
[INFO] [stderr]    Compiling lz4-sys v1.8.3
[INFO] [stderr]    Compiling nom v5.1.1
[INFO] [stderr]    Compiling error-chain v0.12.2
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]    Compiling proc-macro2 v1.0.9
[INFO] [stderr]    Compiling ryu v1.0.3
[INFO] [stderr]    Compiling libc v0.2.68
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling doc-comment v0.3.3
[INFO] [stderr]    Compiling pulldown-cmark v0.2.0
[INFO] [stderr]    Compiling ordered-float v0.3.0
[INFO] [stderr]    Compiling clang-sys v0.29.2
[INFO] [stderr]    Compiling quote v1.0.3
[INFO] [stderr]    Compiling rand v0.4.6
[INFO] [stderr]    Compiling getrandom v0.1.14
[INFO] [stderr]    Compiling syn v1.0.17
[INFO] [stderr]    Compiling backtrace v0.3.45
[INFO] [stderr]    Compiling flate2 v1.0.14
[INFO] [stderr]    Compiling rand_core v0.5.1
[INFO] [stderr]    Compiling rand_chacha v0.2.2
[INFO] [stderr]    Compiling rand v0.7.3
[INFO] [stderr]    Compiling tempdir v0.3.7
[INFO] [stderr]    Compiling cexpr v0.4.0
[INFO] [stderr]    Compiling uuid v0.8.1
[INFO] [stderr]    Compiling tempfile v3.1.0
[INFO] [stderr]    Compiling regex v1.3.5
[INFO] [stderr]    Compiling os_type v2.2.0
[INFO] [stderr]    Compiling synstructure v0.12.3
[INFO] [stderr]    Compiling serde_derive v1.0.105
[INFO] [stderr]    Compiling snafu-derive v0.6.3
[INFO] [stderr]    Compiling derive-new v0.5.8
[INFO] [stderr]    Compiling failure_derive v0.1.7
[INFO] [stderr]    Compiling failure v0.1.7
[INFO] [stderr]    Compiling hts-sys v1.10.2
[INFO] [stderr]    Compiling snafu v0.6.0
[INFO] [stderr]    Compiling semver v0.9.0
[INFO] [stderr]    Compiling serde_json v1.0.48
[INFO] [stderr]    Compiling bstr v0.2.12
[INFO] [stderr]    Compiling toml v0.5.6
[INFO] [stderr]    Compiling bincode v1.2.1
[INFO] [stderr]    Compiling bio-types v0.6.0
[INFO] [stderr]    Compiling serde_bytes v0.11.3
[INFO] [stderr]    Compiling docopt v1.1.0
[INFO] [stderr]    Compiling csv v1.1.3
[INFO] [stderr]    Compiling human-panic v1.0.3
[INFO] [stderr]    Compiling cargo_metadata v0.6.4
[INFO] [stderr]    Compiling skeptic v0.13.4
[INFO] [stderr]    Compiling lz4 v1.23.1
[INFO] [stderr]    Compiling rust-htslib v0.30.0
[INFO] [stderr]    Compiling shardio v0.7.0 (https://github.com/10XGenomics/rust-shardio.git#88aacb25)
[INFO] [stderr]    Compiling bamtofastq v1.3.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 3m 16s
[INFO] running `"docker" "inspect" "d9f679c25c11159499da4494b108a6ff880d55a8302799e81be968e21fdc67d2"`
[INFO] running `"docker" "rm" "-f" "d9f679c25c11159499da4494b108a6ff880d55a8302799e81be968e21fdc67d2"`
[INFO] [stdout] d9f679c25c11159499da4494b108a6ff880d55a8302799e81be968e21fdc67d2
[INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-06-03" "test" "--frozen" "--no-run"`
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] [stdout] de9cfe974ce840c60cbee92a9dd79b58b27899579ea8e1e640d5f061f558131e
[INFO] running `"docker" "start" "-a" "de9cfe974ce840c60cbee92a9dd79b58b27899579ea8e1e640d5f061f558131e"`
[INFO] [stderr] sudo: setrlimit(RLIMIT_CORE): Operation not permitted
[INFO] [stderr]    Compiling bamtofastq v1.3.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 11.93s
[INFO] running `"docker" "inspect" "de9cfe974ce840c60cbee92a9dd79b58b27899579ea8e1e640d5f061f558131e"`
[INFO] running `"docker" "rm" "-f" "de9cfe974ce840c60cbee92a9dd79b58b27899579ea8e1e640d5f061f558131e"`
[INFO] [stdout] de9cfe974ce840c60cbee92a9dd79b58b27899579ea8e1e640d5f061f558131e
[INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-06-03" "test" "--frozen"`
[INFO] [stdout] 6140b098d88208ead5ac2c43a9b16f76f080fc9c853e0ad4a2d8ba112ad5c395
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `"docker" "start" "-a" "6140b098d88208ead5ac2c43a9b16f76f080fc9c853e0ad4a2d8ba112ad5c395"`
[INFO] [stderr] sudo: setrlimit(RLIMIT_CORE): Operation not permitted
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 0.52s
[INFO] [stderr]      Running /opt/rustwide/target/debug/deps/bamtofastq-e390be4decf3b956
[INFO] [stdout] 
[INFO] [stdout] running 6 tests
[INFO] [stdout] test tests::wrong_header ... ok
[INFO] [stdout] test tests::bad_bam ... ok
[INFO] [stdout] test tests::test_cr12 ... ok
[INFO] [stdout] test tests::test_lr21 ... ok
[INFO] [stdout] test tests::test_lr20 ... ok
[INFO] [stdout] test tests::test_cr12_v1 ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 6 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
[INFO] [stdout] 
[INFO] running `"docker" "inspect" "6140b098d88208ead5ac2c43a9b16f76f080fc9c853e0ad4a2d8ba112ad5c395"`
[INFO] running `"docker" "rm" "-f" "6140b098d88208ead5ac2c43a9b16f76f080fc9c853e0ad4a2d8ba112ad5c395"`
[INFO] [stdout] 6140b098d88208ead5ac2c43a9b16f76f080fc9c853e0ad4a2d8ba112ad5c395