[INFO] fetching crate smafa 0.5.0... [INFO] testing smafa-0.5.0 against 1.44.0 for beta-1.45-1 [INFO] extracting crate smafa 0.5.0 into /workspace/builds/worker-5/source [INFO] validating manifest of crates.io crate smafa 0.5.0 on toolchain 1.44.0 [INFO] running `"/workspace/cargo-home/bin/cargo" "+1.44.0" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] started tweaking crates.io crate smafa 0.5.0 [INFO] finished tweaking crates.io crate smafa 0.5.0 [INFO] tweaked toml for crates.io crate smafa 0.5.0 written to /workspace/builds/worker-5/source/Cargo.toml [INFO] running `"/workspace/cargo-home/bin/cargo" "+1.44.0" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update"` [INFO] running `"/workspace/cargo-home/bin/cargo" "+1.44.0" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+1.44.0" "build" "--frozen"` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 28edce870a34aab8a33548cac9b69b5f7321bd5bf5cbf7bd014eb0689ed9adf4 [INFO] running `"docker" "start" "-a" "28edce870a34aab8a33548cac9b69b5f7321bd5bf5cbf7bd014eb0689ed9adf4"` [INFO] [stderr] sudo: setrlimit(RLIMIT_CORE): Operation not permitted [INFO] [stderr] Compiling proc-macro2 v0.4.30 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling syn v0.15.44 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Compiling regex-syntax v0.6.18 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Compiling matrixmultiply v0.1.15 [INFO] [stderr] Compiling ndarray v0.12.1 [INFO] [stderr] Compiling either v1.5.3 [INFO] [stderr] Compiling unicode-segmentation v1.6.0 [INFO] [stderr] Compiling rawpointer v0.1.0 [INFO] [stderr] Compiling fixedbitset v0.1.9 [INFO] [stderr] Compiling bit-vec v0.6.2 [INFO] [stderr] Compiling bio v0.26.1 [INFO] [stderr] Compiling ordermap v0.3.5 [INFO] [stderr] Compiling bytecount v0.3.2 [INFO] [stderr] Compiling ansi_term v0.11.0 [INFO] [stderr] Compiling termcolor v1.1.0 [INFO] [stderr] Compiling strsim v0.8.0 [INFO] [stderr] Compiling strum v0.13.0 [INFO] [stderr] Compiling num-traits v0.2.11 [INFO] [stderr] Compiling thread_local v1.0.1 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling num-integer v0.1.42 [INFO] [stderr] Compiling bincode v1.1.4 [INFO] [stderr] Compiling humantime v1.3.0 [INFO] [stderr] Compiling textwrap v0.11.0 [INFO] [stderr] Compiling itertools v0.7.11 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling bit-set v0.5.2 [INFO] [stderr] Compiling bv v0.10.0 [INFO] [stderr] Compiling petgraph v0.4.13 [INFO] [stderr] Compiling heck v0.3.1 [INFO] [stderr] Compiling aho-corasick v0.7.10 [INFO] [stderr] Compiling csv-core v0.1.10 [INFO] [stderr] Compiling rand v0.4.6 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling regex-automata v0.1.9 [INFO] [stderr] Compiling fxhash v0.2.1 [INFO] [stderr] Compiling snap v0.2.5 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling derive-new v0.5.8 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling multimap v0.4.0 [INFO] [stderr] Compiling bstr v0.2.13 [INFO] [stderr] Compiling clap v2.33.1 [INFO] [stderr] Compiling quote v0.6.13 [INFO] [stderr] Compiling rand v0.3.23 [INFO] [stderr] Compiling statrs v0.9.0 [INFO] [stderr] Compiling itertools-num v0.1.3 [INFO] [stderr] Compiling approx v0.3.2 [INFO] [stderr] Compiling ordered-float v1.0.2 [INFO] [stderr] Compiling csv v1.1.3 [INFO] [stderr] Compiling regex v1.3.9 [INFO] [stderr] Compiling bio-types v0.6.0 [INFO] [stderr] Compiling env_logger v0.6.2 [INFO] [stderr] Compiling strum_macros v0.13.0 [INFO] [stderr] Compiling smafa v0.5.0 (/opt/rustwide/workdir) [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/fragment_clusterer.rs:13:47 [INFO] [stderr] | [INFO] [stderr] 13 | ... print_stream: &mut std::io::Write){ [INFO] [stderr] | ^^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Write` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/lib.rs:168:33 [INFO] [stderr] | [INFO] [stderr] 168 | print_stream: &mut std::io::Write, k: usize, [INFO] [stderr] | ^^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Write` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/lib.rs:306:24 [INFO] [stderr] | [INFO] [stderr] 306 | print_stream: &mut std::io::Write, [INFO] [stderr] | ^^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Write` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/lib.rs:447:24 [INFO] [stderr] | [INFO] [stderr] 447 | print_stream: &mut std::io::Write) { [INFO] [stderr] | ^^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Write` [INFO] [stderr] [INFO] [stderr] warning: 4 warnings emitted [INFO] [stderr] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 52.97s [INFO] running `"docker" "inspect" "28edce870a34aab8a33548cac9b69b5f7321bd5bf5cbf7bd014eb0689ed9adf4"` [INFO] running `"docker" "rm" "-f" "28edce870a34aab8a33548cac9b69b5f7321bd5bf5cbf7bd014eb0689ed9adf4"` [INFO] [stdout] 28edce870a34aab8a33548cac9b69b5f7321bd5bf5cbf7bd014eb0689ed9adf4 [INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+1.44.0" "test" "--frozen" "--no-run"` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 750c10aa96d8738f1841848b36c86454498b5301df03b39ecfeb2faf70e908d4 [INFO] running `"docker" "start" "-a" "750c10aa96d8738f1841848b36c86454498b5301df03b39ecfeb2faf70e908d4"` [INFO] [stderr] sudo: setrlimit(RLIMIT_CORE): Operation not permitted [INFO] [stderr] Compiling difference v2.0.0 [INFO] [stderr] Compiling environment v0.1.1 [INFO] [stderr] Compiling colored v1.9.3 [INFO] [stderr] Compiling tempfile v2.2.0 [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/fragment_clusterer.rs:13:47 [INFO] [stderr] | [INFO] [stderr] 13 | ... print_stream: &mut std::io::Write){ [INFO] [stderr] | ^^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Write` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/lib.rs:168:33 [INFO] [stderr] | [INFO] [stderr] 168 | print_stream: &mut std::io::Write, k: usize, [INFO] [stderr] | ^^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Write` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/lib.rs:306:24 [INFO] [stderr] | [INFO] [stderr] 306 | print_stream: &mut std::io::Write, [INFO] [stderr] | ^^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Write` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/lib.rs:447:24 [INFO] [stderr] | [INFO] [stderr] 447 | print_stream: &mut std::io::Write) { [INFO] [stderr] | ^^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Write` [INFO] [stderr] [INFO] [stderr] warning: 4 warnings emitted [INFO] [stderr] [INFO] [stderr] Compiling assert_cli v0.6.3 [INFO] [stderr] Compiling smafa v0.5.0 (/opt/rustwide/workdir) [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/fragment_clusterer.rs:13:47 [INFO] [stderr] | [INFO] [stderr] 13 | ... print_stream: &mut std::io::Write){ [INFO] [stderr] | ^^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Write` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/lib.rs:168:33 [INFO] [stderr] | [INFO] [stderr] 168 | print_stream: &mut std::io::Write, k: usize, [INFO] [stderr] | ^^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Write` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/lib.rs:306:24 [INFO] [stderr] | [INFO] [stderr] 306 | print_stream: &mut std::io::Write, [INFO] [stderr] | ^^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Write` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/lib.rs:447:24 [INFO] [stderr] | [INFO] [stderr] 447 | print_stream: &mut std::io::Write) { [INFO] [stderr] | ^^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Write` [INFO] [stderr] [INFO] [stderr] warning: 4 warnings emitted [INFO] [stderr] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 5.60s [INFO] running `"docker" "inspect" "750c10aa96d8738f1841848b36c86454498b5301df03b39ecfeb2faf70e908d4"` [INFO] running `"docker" "rm" "-f" "750c10aa96d8738f1841848b36c86454498b5301df03b39ecfeb2faf70e908d4"` [INFO] [stdout] 750c10aa96d8738f1841848b36c86454498b5301df03b39ecfeb2faf70e908d4 [INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+1.44.0" "test" "--frozen"` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] c974f68d6e3156841e56d16e15fd75ac84d37e8ff6e062f29303d1b123b2f339 [INFO] running `"docker" "start" "-a" "c974f68d6e3156841e56d16e15fd75ac84d37e8ff6e062f29303d1b123b2f339"` [INFO] [stderr] sudo: setrlimit(RLIMIT_CORE): Operation not permitted [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/fragment_clusterer.rs:13:47 [INFO] [stderr] | [INFO] [stderr] 13 | ... print_stream: &mut std::io::Write){ [INFO] [stderr] | ^^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Write` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/lib.rs:168:33 [INFO] [stderr] | [INFO] [stderr] 168 | print_stream: &mut std::io::Write, k: usize, [INFO] [stderr] | ^^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Write` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/lib.rs:306:24 [INFO] [stderr] | [INFO] [stderr] 306 | print_stream: &mut std::io::Write, [INFO] [stderr] | ^^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Write` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/lib.rs:447:24 [INFO] [stderr] | [INFO] [stderr] 447 | print_stream: &mut std::io::Write) { [INFO] [stderr] | ^^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Write` [INFO] [stderr] [INFO] [stderr] warning: 4 warnings emitted [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/fragment_clusterer.rs:13:47 [INFO] [stderr] | [INFO] [stderr] 13 | ... print_stream: &mut std::io::Write){ [INFO] [stderr] | ^^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Write` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/lib.rs:168:33 [INFO] [stderr] | [INFO] [stderr] 168 | print_stream: &mut std::io::Write, k: usize, [INFO] [stderr] | ^^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Write` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/lib.rs:306:24 [INFO] [stderr] | [INFO] [stderr] 306 | print_stream: &mut std::io::Write, [INFO] [stderr] | ^^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Write` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/lib.rs:447:24 [INFO] [stderr] | [INFO] [stderr] 447 | print_stream: &mut std::io::Write) { [INFO] [stderr] | ^^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Write` [INFO] [stderr] [INFO] [stderr] warning: 4 warnings emitted [INFO] [stderr] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.09s [INFO] [stderr] Running /opt/rustwide/target/debug/deps/smafa-433800904d2e9a48 [INFO] [stdout] [INFO] [stdout] running 8 tests [INFO] [stdout] test fragment_clusterer::tests::test_bug1 ... ok [INFO] [stdout] test fragment_clusterer::tests::test_best_hit_changes_bug ... ok [INFO] [stdout] test fragment_clusterer::tests::test_simple ... ok [INFO] [stdout] test tests::test_cluster_hello_world ... ok [INFO] [stdout] test tests::test_cluster_all_singletons ... ok [INFO] [stdout] test translation::tests::test_hello_world ... ok [INFO] [stdout] test tests::makedb_and_query100seqs ... ok [INFO] [stdout] test tests::test_cluster_many_seqs ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 8 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] [stderr] Running /opt/rustwide/target/debug/deps/smafa-b815580e4907d5f9 [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] [stderr] Running /opt/rustwide/target/debug/deps/test_cmdline-37ff403e5b083363 [INFO] [stdout] [INFO] [stdout] running 5 tests [INFO] [stdout] test tests::test_cluster_amino_acids ... ok [INFO] [stdout] test tests::test_protein_makedb_and_query ... ok [INFO] [stdout] test tests::test_translated_makedb_and_query_shorter ... ok [INFO] [stdout] test tests::test_protein_makedb_and_query_shorter ... ok [INFO] [stdout] test tests::test_db_version_incompatibility ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 5 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] [stderr] Doc-tests smafa [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] running `"docker" "inspect" "c974f68d6e3156841e56d16e15fd75ac84d37e8ff6e062f29303d1b123b2f339"` [INFO] running `"docker" "rm" "-f" "c974f68d6e3156841e56d16e15fd75ac84d37e8ff6e062f29303d1b123b2f339"` [INFO] [stdout] c974f68d6e3156841e56d16e15fd75ac84d37e8ff6e062f29303d1b123b2f339