[INFO] crate rnafamprob 0.1.0 is already in cache [INFO] testing rnafamprob-0.1.0 against 1.44.0 for beta-1.45-1 [INFO] extracting crate rnafamprob 0.1.0 into /workspace/builds/worker-12/source [INFO] validating manifest of crates.io crate rnafamprob 0.1.0 on toolchain 1.44.0 [INFO] running `"/workspace/cargo-home/bin/cargo" "+1.44.0" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] started tweaking crates.io crate rnafamprob 0.1.0 [INFO] finished tweaking crates.io crate rnafamprob 0.1.0 [INFO] tweaked toml for crates.io crate rnafamprob 0.1.0 written to /workspace/builds/worker-12/source/Cargo.toml [INFO] crate crates.io crate rnafamprob 0.1.0 already has a lockfile, it will not be regenerated [INFO] running `"/workspace/cargo-home/bin/cargo" "+1.44.0" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+1.44.0" "build" "--frozen"` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 01128625a08a1c14668e5d27c3b3b6ee2f7bde695d96161a5b2befc73a6223c8 [INFO] running `"docker" "start" "-a" "01128625a08a1c14668e5d27c3b3b6ee2f7bde695d96161a5b2befc73a6223c8"` [INFO] [stderr] sudo: setrlimit(RLIMIT_CORE): Operation not permitted [INFO] [stderr] Compiling libc v0.2.65 [INFO] [stderr] Compiling syn v1.0.5 [INFO] [stderr] Compiling memchr v2.2.1 [INFO] [stderr] Compiling serde v1.0.101 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling matrixmultiply v0.1.15 [INFO] [stderr] Compiling bv v0.7.4 [INFO] [stderr] Compiling rawpointer v0.1.0 [INFO] [stderr] Compiling ucd-util v0.1.5 [INFO] [stderr] Compiling ndarray v0.9.1 [INFO] [stderr] Compiling regex v0.2.11 [INFO] [stderr] Compiling utf8-ranges v1.0.4 [INFO] [stderr] Compiling bit-vec v0.4.4 [INFO] [stderr] Compiling lazy_static v0.1.16 [INFO] [stderr] Compiling unicode-width v0.1.6 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling quick-error v1.2.2 [INFO] [stderr] Compiling approx v0.1.1 [INFO] [stderr] Compiling bytecount v0.3.2 [INFO] [stderr] Compiling num-traits v0.2.8 [INFO] [stderr] Compiling num-integer v0.1.41 [INFO] [stderr] Compiling thread_local v0.3.6 [INFO] [stderr] Compiling itertools v0.6.5 [INFO] [stderr] Compiling itertools v0.7.11 [INFO] [stderr] Compiling getopts v0.2.21 [INFO] [stderr] Compiling bio-seq-algos v0.1.12 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling regex-syntax v0.5.6 [INFO] [stderr] Compiling bit-set v0.4.0 [INFO] [stderr] Compiling regex-automata v0.1.8 [INFO] [stderr] Compiling rna-ss-params v0.1.13 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling num_cpus v1.10.1 [INFO] [stderr] Compiling time v0.1.42 [INFO] [stderr] Compiling aho-corasick v0.6.10 [INFO] [stderr] Compiling csv-core v0.1.6 [INFO] [stderr] Compiling num-traits v0.1.43 [INFO] [stderr] Compiling num-complex v0.1.43 [INFO] [stderr] Compiling itertools-num v0.1.3 [INFO] [stderr] Compiling ordered-float v0.5.2 [INFO] [stderr] Compiling serde_derive v1.0.101 [INFO] [stderr] Compiling bstr v0.2.8 [INFO] [stderr] Compiling multimap v0.4.0 [INFO] [stderr] Compiling vec_map v0.8.1 [INFO] [stderr] Compiling csv v1.1.1 [INFO] [stderr] Compiling bio v0.20.3 [INFO] [stderr] Compiling rna-algos v0.1.10 [INFO] [stderr] Compiling rnafamprob v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] warning: unnecessary trailing semicolon [INFO] [stderr] --> src/lib.rs:1279:152 [INFO] [stderr] | [INFO] [stderr] 1279 | let ep_of_term_4_log_pf = log_sta_ppf_mat_sets.log_ppf_mats_on_sas.log_ppf_mat_4_gaps_2[&pos_pair_2] + sta_fe_params.extending_gap_penalty;; [INFO] [stderr] | ^ help: remove this semicolon [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(redundant_semicolons)]` on by default [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred [INFO] [stderr] --> src/utils.rs:26:1 [INFO] [stderr] | [INFO] [stderr] 26 | / lazy_static! { [INFO] [stderr] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stderr] 28 | | [ [INFO] [stderr] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stderr] ... | [INFO] [stderr] 44 | | }; [INFO] [stderr] 45 | | } [INFO] [stderr] | |_^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(deprecated)]` on by default [INFO] [stderr] = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred [INFO] [stderr] --> src/utils.rs:26:1 [INFO] [stderr] | [INFO] [stderr] 26 | / lazy_static! { [INFO] [stderr] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stderr] 28 | | [ [INFO] [stderr] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stderr] ... | [INFO] [stderr] 44 | | }; [INFO] [stderr] 45 | | } [INFO] [stderr] | |_^ [INFO] [stderr] | [INFO] [stderr] = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred [INFO] [stderr] --> src/utils.rs:26:1 [INFO] [stderr] | [INFO] [stderr] 26 | / lazy_static! { [INFO] [stderr] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stderr] 28 | | [ [INFO] [stderr] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stderr] ... | [INFO] [stderr] 44 | | }; [INFO] [stderr] 45 | | } [INFO] [stderr] | |_^ [INFO] [stderr] | [INFO] [stderr] = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred [INFO] [stderr] --> src/utils.rs:26:1 [INFO] [stderr] | [INFO] [stderr] 26 | / lazy_static! { [INFO] [stderr] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stderr] 28 | | [ [INFO] [stderr] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stderr] ... | [INFO] [stderr] 44 | | }; [INFO] [stderr] 45 | | } [INFO] [stderr] | |_^ [INFO] [stderr] | [INFO] [stderr] = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: 5 warnings emitted [INFO] [stderr] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 1m 10s [INFO] running `"docker" "inspect" "01128625a08a1c14668e5d27c3b3b6ee2f7bde695d96161a5b2befc73a6223c8"` [INFO] running `"docker" "rm" "-f" "01128625a08a1c14668e5d27c3b3b6ee2f7bde695d96161a5b2befc73a6223c8"` [INFO] [stdout] 01128625a08a1c14668e5d27c3b3b6ee2f7bde695d96161a5b2befc73a6223c8 [INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+1.44.0" "test" "--frozen" "--no-run"` [INFO] [stdout] 4fd3e394f2b413beba871f0f8645e2f137c9e59e13f2726d262899b6b3574d60 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `"docker" "start" "-a" "4fd3e394f2b413beba871f0f8645e2f137c9e59e13f2726d262899b6b3574d60"` [INFO] [stderr] sudo: setrlimit(RLIMIT_CORE): Operation not permitted [INFO] [stderr] Compiling rnafamprob v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] warning: unnecessary trailing semicolon [INFO] [stderr] --> src/lib.rs:1279:152 [INFO] [stderr] | [INFO] [stderr] 1279 | let ep_of_term_4_log_pf = log_sta_ppf_mat_sets.log_ppf_mats_on_sas.log_ppf_mat_4_gaps_2[&pos_pair_2] + sta_fe_params.extending_gap_penalty;; [INFO] [stderr] | ^ help: remove this semicolon [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(redundant_semicolons)]` on by default [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred [INFO] [stderr] --> src/utils.rs:26:1 [INFO] [stderr] | [INFO] [stderr] 26 | / lazy_static! { [INFO] [stderr] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stderr] 28 | | [ [INFO] [stderr] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stderr] ... | [INFO] [stderr] 44 | | }; [INFO] [stderr] 45 | | } [INFO] [stderr] | |_^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(deprecated)]` on by default [INFO] [stderr] = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred [INFO] [stderr] --> src/utils.rs:26:1 [INFO] [stderr] | [INFO] [stderr] 26 | / lazy_static! { [INFO] [stderr] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stderr] 28 | | [ [INFO] [stderr] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stderr] ... | [INFO] [stderr] 44 | | }; [INFO] [stderr] 45 | | } [INFO] [stderr] | |_^ [INFO] [stderr] | [INFO] [stderr] = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred [INFO] [stderr] --> src/utils.rs:26:1 [INFO] [stderr] | [INFO] [stderr] 26 | / lazy_static! { [INFO] [stderr] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stderr] 28 | | [ [INFO] [stderr] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stderr] ... | [INFO] [stderr] 44 | | }; [INFO] [stderr] 45 | | } [INFO] [stderr] | |_^ [INFO] [stderr] | [INFO] [stderr] = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred [INFO] [stderr] --> src/utils.rs:26:1 [INFO] [stderr] | [INFO] [stderr] 26 | / lazy_static! { [INFO] [stderr] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stderr] 28 | | [ [INFO] [stderr] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stderr] ... | [INFO] [stderr] 44 | | }; [INFO] [stderr] 45 | | } [INFO] [stderr] | |_^ [INFO] [stderr] | [INFO] [stderr] = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: 5 warnings emitted [INFO] [stderr] [INFO] [stderr] warning: unnecessary trailing semicolon [INFO] [stderr] --> src/lib.rs:1279:152 [INFO] [stderr] | [INFO] [stderr] 1279 | let ep_of_term_4_log_pf = log_sta_ppf_mat_sets.log_ppf_mats_on_sas.log_ppf_mat_4_gaps_2[&pos_pair_2] + sta_fe_params.extending_gap_penalty;; [INFO] [stderr] | ^ help: remove this semicolon [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(redundant_semicolons)]` on by default [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred [INFO] [stderr] --> src/utils.rs:26:1 [INFO] [stderr] | [INFO] [stderr] 26 | / lazy_static! { [INFO] [stderr] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stderr] 28 | | [ [INFO] [stderr] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stderr] ... | [INFO] [stderr] 44 | | }; [INFO] [stderr] 45 | | } [INFO] [stderr] | |_^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(deprecated)]` on by default [INFO] [stderr] = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred [INFO] [stderr] --> src/utils.rs:26:1 [INFO] [stderr] | [INFO] [stderr] 26 | / lazy_static! { [INFO] [stderr] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stderr] 28 | | [ [INFO] [stderr] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stderr] ... | [INFO] [stderr] 44 | | }; [INFO] [stderr] 45 | | } [INFO] [stderr] | |_^ [INFO] [stderr] | [INFO] [stderr] = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred [INFO] [stderr] --> src/utils.rs:26:1 [INFO] [stderr] | [INFO] [stderr] 26 | / lazy_static! { [INFO] [stderr] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stderr] 28 | | [ [INFO] [stderr] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stderr] ... | [INFO] [stderr] 44 | | }; [INFO] [stderr] 45 | | } [INFO] [stderr] | |_^ [INFO] [stderr] | [INFO] [stderr] = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred [INFO] [stderr] --> src/utils.rs:26:1 [INFO] [stderr] | [INFO] [stderr] 26 | / lazy_static! { [INFO] [stderr] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stderr] 28 | | [ [INFO] [stderr] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stderr] ... | [INFO] [stderr] 44 | | }; [INFO] [stderr] 45 | | } [INFO] [stderr] | |_^ [INFO] [stderr] | [INFO] [stderr] = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: 5 warnings emitted [INFO] [stderr] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 1.54s [INFO] running `"docker" "inspect" "4fd3e394f2b413beba871f0f8645e2f137c9e59e13f2726d262899b6b3574d60"` [INFO] running `"docker" "rm" "-f" "4fd3e394f2b413beba871f0f8645e2f137c9e59e13f2726d262899b6b3574d60"` [INFO] [stdout] 4fd3e394f2b413beba871f0f8645e2f137c9e59e13f2726d262899b6b3574d60 [INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+1.44.0" "test" "--frozen"` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] aa1e62c3bf87d06b00207fd7c4c14383217908dc1dc90291a3296abfbb9dada7 [INFO] running `"docker" "start" "-a" "aa1e62c3bf87d06b00207fd7c4c14383217908dc1dc90291a3296abfbb9dada7"` [INFO] [stderr] sudo: setrlimit(RLIMIT_CORE): Operation not permitted [INFO] [stderr] warning: unnecessary trailing semicolon [INFO] [stderr] --> src/lib.rs:1279:152 [INFO] [stderr] | [INFO] [stderr] 1279 | let ep_of_term_4_log_pf = log_sta_ppf_mat_sets.log_ppf_mats_on_sas.log_ppf_mat_4_gaps_2[&pos_pair_2] + sta_fe_params.extending_gap_penalty;; [INFO] [stderr] | ^ help: remove this semicolon [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(redundant_semicolons)]` on by default [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred [INFO] [stderr] --> src/utils.rs:26:1 [INFO] [stderr] | [INFO] [stderr] 26 | / lazy_static! { [INFO] [stderr] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stderr] 28 | | [ [INFO] [stderr] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stderr] ... | [INFO] [stderr] 44 | | }; [INFO] [stderr] 45 | | } [INFO] [stderr] | |_^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(deprecated)]` on by default [INFO] [stderr] = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred [INFO] [stderr] --> src/utils.rs:26:1 [INFO] [stderr] | [INFO] [stderr] 26 | / lazy_static! { [INFO] [stderr] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stderr] 28 | | [ [INFO] [stderr] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stderr] ... | [INFO] [stderr] 44 | | }; [INFO] [stderr] 45 | | } [INFO] [stderr] | |_^ [INFO] [stderr] | [INFO] [stderr] = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred [INFO] [stderr] --> src/utils.rs:26:1 [INFO] [stderr] | [INFO] [stderr] 26 | / lazy_static! { [INFO] [stderr] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stderr] 28 | | [ [INFO] [stderr] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stderr] ... | [INFO] [stderr] 44 | | }; [INFO] [stderr] 45 | | } [INFO] [stderr] | |_^ [INFO] [stderr] | [INFO] [stderr] = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred [INFO] [stderr] --> src/utils.rs:26:1 [INFO] [stderr] | [INFO] [stderr] 26 | / lazy_static! { [INFO] [stderr] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stderr] 28 | | [ [INFO] [stderr] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stderr] ... | [INFO] [stderr] 44 | | }; [INFO] [stderr] 45 | | } [INFO] [stderr] | |_^ [INFO] [stderr] | [INFO] [stderr] = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: 5 warnings emitted [INFO] [stderr] [INFO] [stderr] warning: unnecessary trailing semicolon [INFO] [stderr] --> src/lib.rs:1279:152 [INFO] [stderr] | [INFO] [stderr] 1279 | let ep_of_term_4_log_pf = log_sta_ppf_mat_sets.log_ppf_mats_on_sas.log_ppf_mat_4_gaps_2[&pos_pair_2] + sta_fe_params.extending_gap_penalty;; [INFO] [stderr] | ^ help: remove this semicolon [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(redundant_semicolons)]` on by default [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred [INFO] [stderr] --> src/utils.rs:26:1 [INFO] [stderr] | [INFO] [stderr] 26 | / lazy_static! { [INFO] [stderr] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stderr] 28 | | [ [INFO] [stderr] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stderr] ... | [INFO] [stderr] 44 | | }; [INFO] [stderr] 45 | | } [INFO] [stderr] | |_^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(deprecated)]` on by default [INFO] [stderr] = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred [INFO] [stderr] --> src/utils.rs:26:1 [INFO] [stderr] | [INFO] [stderr] 26 | / lazy_static! { [INFO] [stderr] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stderr] 28 | | [ [INFO] [stderr] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stderr] ... | [INFO] [stderr] 44 | | }; [INFO] [stderr] 45 | | } [INFO] [stderr] | |_^ [INFO] [stderr] | [INFO] [stderr] = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred [INFO] [stderr] --> src/utils.rs:26:1 [INFO] [stderr] | [INFO] [stderr] 26 | / lazy_static! { [INFO] [stderr] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stderr] 28 | | [ [INFO] [stderr] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stderr] ... | [INFO] [stderr] 44 | | }; [INFO] [stderr] 45 | | } [INFO] [stderr] | |_^ [INFO] [stderr] | [INFO] [stderr] = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred [INFO] [stderr] --> src/utils.rs:26:1 [INFO] [stderr] | [INFO] [stderr] 26 | / lazy_static! { [INFO] [stderr] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stderr] 28 | | [ [INFO] [stderr] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stderr] ... | [INFO] [stderr] 44 | | }; [INFO] [stderr] 45 | | } [INFO] [stderr] | |_^ [INFO] [stderr] | [INFO] [stderr] = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: 5 warnings emitted [INFO] [stderr] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.05s [INFO] [stderr] Running /opt/rustwide/target/debug/deps/rnafamprob-0ab5bade95019706 [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] [stderr] Running /opt/rustwide/target/debug/deps/rnafamprob-1bc394c7f6913479 [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] [stderr] Running /opt/rustwide/target/debug/deps/tests-b9124ecfa65de179 [INFO] [stdout] [INFO] [stdout] running 1 test [INFO] [stdout] test test_rnafam_program ... FAILED [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] [INFO] [stdout] ---- test_rnafam_program stdout ---- [INFO] [stdout] thread 'test_rnafam_program' panicked at 'Failed to run the RNAfamProb program.: Os { code: 2, kind: NotFound, message: "No such file or directory" }', tests/tests.rs:19:3 [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x556b63235bc4 - backtrace::backtrace::libunwind::trace::hc1c4a1d8ad423b97 [INFO] [stdout] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/libunwind.rs:86 [INFO] [stdout] 1: 0x556b63235bc4 - backtrace::backtrace::trace_unsynchronized::h82274781060cb056 [INFO] [stdout] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/mod.rs:66 [INFO] [stdout] 2: 0x556b63235bc4 - std::sys_common::backtrace::_print_fmt::h2a45d89b653a4da8 [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:78 [INFO] [stdout] 3: 0x556b63235bc4 - ::fmt::h41a0a93ab85e6aa1 [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:59 [INFO] [stdout] 4: 0x556b6325e81c - core::fmt::write::hdaea18585065a96d [INFO] [stdout] at src/libcore/fmt/mod.rs:1069 [INFO] [stdout] 5: 0x556b631e8565 - std::io::Write::write_fmt::h42f0550b6bd39c6e [INFO] [stdout] at /rustc/49cae55760da0a43428eba73abcb659bb70cf2e4/src/libstd/io/mod.rs:1504 [INFO] [stdout] 6: 0x556b632301b1 - std::io::impls::>::write_fmt::h223d7b7033cad46d [INFO] [stdout] at src/libstd/io/impls.rs:156 [INFO] [stdout] 7: 0x556b63238415 - std::sys_common::backtrace::_print::hd95f9978cc145ca4 [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:62 [INFO] [stdout] 8: 0x556b63238415 - std::sys_common::backtrace::print::hfb25ca2291be47d0 [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:49 [INFO] [stdout] 9: 0x556b63238415 - std::panicking::default_hook::{{closure}}::h44f76cee5dc8591c [INFO] [stdout] at src/libstd/panicking.rs:198 [INFO] [stdout] 10: 0x556b632380fb - std::panicking::default_hook::h198e1a712910f1e6 [INFO] [stdout] at src/libstd/panicking.rs:215 [INFO] [stdout] 11: 0x556b63238a72 - std::panicking::rust_panic_with_hook::hc0b4730bb8013f9d [INFO] [stdout] at src/libstd/panicking.rs:511 [INFO] [stdout] 12: 0x556b6323865b - rust_begin_unwind [INFO] [stdout] at src/libstd/panicking.rs:419 [INFO] [stdout] 13: 0x556b6325d241 - core::panicking::panic_fmt::h1ac71ad045d55416 [INFO] [stdout] at src/libcore/panicking.rs:111 [INFO] [stdout] 14: 0x556b6325d063 - core::option::expect_none_failed::hb40004d71d61b685 [INFO] [stdout] at src/libcore/option.rs:1268 [INFO] [stdout] 15: 0x556b631e4055 - core::result::Result::expect::h7ec16c86d0fe5c17 [INFO] [stdout] at /rustc/49cae55760da0a43428eba73abcb659bb70cf2e4/src/libcore/result.rs:963 [INFO] [stdout] 16: 0x556b631e6823 - tests::run_command::h6599689dcc53e7ab [INFO] [stdout] at tests/tests.rs:19 [INFO] [stdout] 17: 0x556b631e6956 - tests::test_rnafam_program::h7e96b765d92a7edf [INFO] [stdout] at tests/tests.rs:12 [INFO] [stdout] 18: 0x556b631e685a - tests::test_rnafam_program::{{closure}}::ha00e07700c9c39f4 [INFO] [stdout] at tests/tests.rs:8 [INFO] [stdout] 19: 0x556b631e34de - core::ops::function::FnOnce::call_once::hbd90748b8b9eb249 [INFO] [stdout] at /rustc/49cae55760da0a43428eba73abcb659bb70cf2e4/src/libcore/ops/function.rs:232 [INFO] [stdout] 20: 0x556b6320f9f6 - as core::ops::function::FnOnce>::call_once::hc165f65f4331a55c [INFO] [stdout] at /rustc/49cae55760da0a43428eba73abcb659bb70cf2e4/src/liballoc/boxed.rs:1008 [INFO] [stdout] 21: 0x556b6320f9f6 - as core::ops::function::FnOnce<()>>::call_once::hb89f1f769cad07ce [INFO] [stdout] at /rustc/49cae55760da0a43428eba73abcb659bb70cf2e4/src/libstd/panic.rs:318 [INFO] [stdout] 22: 0x556b6320f9f6 - std::panicking::try::do_call::h104f7f3dae5a1b29 [INFO] [stdout] at /rustc/49cae55760da0a43428eba73abcb659bb70cf2e4/src/libstd/panicking.rs:331 [INFO] [stdout] 23: 0x556b6320f9f6 - std::panicking::try::h0e20f01361cba753 [INFO] [stdout] at /rustc/49cae55760da0a43428eba73abcb659bb70cf2e4/src/libstd/panicking.rs:274 [INFO] [stdout] 24: 0x556b6320f9f6 - std::panic::catch_unwind::h0bd0c84b5f4cd121 [INFO] [stdout] at /rustc/49cae55760da0a43428eba73abcb659bb70cf2e4/src/libstd/panic.rs:394 [INFO] [stdout] 25: 0x556b6320f9f6 - test::run_test_in_process::hf34c22adfeb6853d [INFO] [stdout] at src/libtest/lib.rs:541 [INFO] [stdout] 26: 0x556b6320f9f6 - test::run_test::run_test_inner::{{closure}}::h40d568b4c10a12f1 [INFO] [stdout] at src/libtest/lib.rs:450 [INFO] [stdout] 27: 0x556b631e7a16 - std::sys_common::backtrace::__rust_begin_short_backtrace::hffd9774ad3f2d778 [INFO] [stdout] at /rustc/49cae55760da0a43428eba73abcb659bb70cf2e4/src/libstd/sys_common/backtrace.rs:130 [INFO] [stdout] 28: 0x556b631ecda5 - std::thread::Builder::spawn_unchecked::{{closure}}::{{closure}}::h4594020476cf52d4 [INFO] [stdout] at /rustc/49cae55760da0a43428eba73abcb659bb70cf2e4/src/libstd/thread/mod.rs:475 [INFO] [stdout] 29: 0x556b631ecda5 - as core::ops::function::FnOnce<()>>::call_once::h9d0a6d45b73e29e4 [INFO] [stdout] at /rustc/49cae55760da0a43428eba73abcb659bb70cf2e4/src/libstd/panic.rs:318 [INFO] [stdout] 30: 0x556b631ecda5 - std::panicking::try::do_call::h902fd77b30bb3bb7 [INFO] [stdout] at /rustc/49cae55760da0a43428eba73abcb659bb70cf2e4/src/libstd/panicking.rs:331 [INFO] [stdout] 31: 0x556b631ecda5 - std::panicking::try::hc17d3a628e65d49d [INFO] [stdout] at /rustc/49cae55760da0a43428eba73abcb659bb70cf2e4/src/libstd/panicking.rs:274 [INFO] [stdout] 32: 0x556b631ecda5 - std::panic::catch_unwind::h9c9d49cbb6b18017 [INFO] [stdout] at /rustc/49cae55760da0a43428eba73abcb659bb70cf2e4/src/libstd/panic.rs:394 [INFO] [stdout] 33: 0x556b631ecda5 - std::thread::Builder::spawn_unchecked::{{closure}}::h6a6f5a333fd631a2 [INFO] [stdout] at /rustc/49cae55760da0a43428eba73abcb659bb70cf2e4/src/libstd/thread/mod.rs:474 [INFO] [stdout] 34: 0x556b631ecda5 - core::ops::function::FnOnce::call_once{{vtable.shim}}::ha6fb197e0ce57f73 [INFO] [stdout] at /rustc/49cae55760da0a43428eba73abcb659bb70cf2e4/src/libcore/ops/function.rs:232 [INFO] [stdout] 35: 0x556b6323f2ea - as core::ops::function::FnOnce>::call_once::h1f1fac7de7dd9691 [INFO] [stdout] at /rustc/49cae55760da0a43428eba73abcb659bb70cf2e4/src/liballoc/boxed.rs:1008 [INFO] [stdout] 36: 0x556b6323f2ea - as core::ops::function::FnOnce>::call_once::ha031f48633a6af54 [INFO] [stdout] at /rustc/49cae55760da0a43428eba73abcb659bb70cf2e4/src/liballoc/boxed.rs:1008 [INFO] [stdout] 37: 0x556b6323f2ea - std::sys::unix::thread::Thread::new::thread_start::h241864caf436e182 [INFO] [stdout] at src/libstd/sys/unix/thread.rs:87 [INFO] [stdout] 38: 0x7f1dbcdc4609 - start_thread [INFO] [stdout] 39: 0x7f1dbccd0103 - __clone [INFO] [stdout] 40: 0x0 - [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] test_rnafam_program [INFO] [stdout] [INFO] [stdout] test result: FAILED. 0 passed; 1 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] [stderr] error: test failed, to rerun pass '--test tests' [INFO] running `"docker" "inspect" "aa1e62c3bf87d06b00207fd7c4c14383217908dc1dc90291a3296abfbb9dada7"` [INFO] running `"docker" "rm" "-f" "aa1e62c3bf87d06b00207fd7c4c14383217908dc1dc90291a3296abfbb9dada7"` [INFO] [stdout] aa1e62c3bf87d06b00207fd7c4c14383217908dc1dc90291a3296abfbb9dada7