[INFO] fetching crate needletail 0.3.2... [INFO] testing needletail-0.3.2 against 1.44.0 for beta-1.45-1 [INFO] extracting crate needletail 0.3.2 into /workspace/builds/worker-8/source [INFO] validating manifest of crates.io crate needletail 0.3.2 on toolchain 1.44.0 [INFO] running `"/workspace/cargo-home/bin/cargo" "+1.44.0" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] started tweaking crates.io crate needletail 0.3.2 [INFO] finished tweaking crates.io crate needletail 0.3.2 [INFO] tweaked toml for crates.io crate needletail 0.3.2 written to /workspace/builds/worker-8/source/Cargo.toml [INFO] running `"/workspace/cargo-home/bin/cargo" "+1.44.0" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update"` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `"/workspace/cargo-home/bin/cargo" "+1.44.0" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+1.44.0" "build" "--frozen"` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] fcaf74718fd07592fa85c983c3b1953a2d8bcd3368c7a2a0849ac02ced71f023 [INFO] running `"docker" "start" "-a" "fcaf74718fd07592fa85c983c3b1953a2d8bcd3368c7a2a0849ac02ced71f023"` [INFO] [stderr] sudo: setrlimit(RLIMIT_CORE): Operation not permitted [INFO] [stderr] Compiling libc v0.2.71 [INFO] [stderr] Compiling crc32fast v1.2.0 [INFO] [stderr] Compiling adler32 v1.0.4 [INFO] [stderr] Compiling safemem v0.3.3 [INFO] [stderr] Compiling bzip2-sys v0.1.9+1.0.8 [INFO] [stderr] Compiling lzma-sys v0.1.16 [INFO] [stderr] Compiling miniz_oxide v0.3.6 [INFO] [stderr] Compiling flate2 v1.0.14 [INFO] [stderr] Compiling bzip2 v0.3.3 [INFO] [stderr] Compiling xz2 v0.1.6 [INFO] [stderr] Compiling needletail v0.3.2 (/opt/rustwide/workdir) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 6.82s [INFO] running `"docker" "inspect" "fcaf74718fd07592fa85c983c3b1953a2d8bcd3368c7a2a0849ac02ced71f023"` [INFO] running `"docker" "rm" "-f" "fcaf74718fd07592fa85c983c3b1953a2d8bcd3368c7a2a0849ac02ced71f023"` [INFO] [stdout] fcaf74718fd07592fa85c983c3b1953a2d8bcd3368c7a2a0849ac02ced71f023 [INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+1.44.0" "test" "--frozen" "--no-run"` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] ab2eb3b26d6b9605b27728e852c95d4140bd3296ce423c19d3a984e08f9f607a [INFO] running `"docker" "start" "-a" "ab2eb3b26d6b9605b27728e852c95d4140bd3296ce423c19d3a984e08f9f607a"` [INFO] [stderr] sudo: setrlimit(RLIMIT_CORE): Operation not permitted [INFO] [stderr] Compiling syn v1.0.30 [INFO] [stderr] Compiling serde v1.0.111 [INFO] [stderr] Compiling arrayvec v0.4.12 [INFO] [stderr] Compiling scopeguard v0.3.3 [INFO] [stderr] Compiling rand_core v0.4.2 [INFO] [stderr] Compiling nodrop v0.1.14 [INFO] [stderr] Compiling proc-macro2 v0.4.30 [INFO] [stderr] Compiling memoffset v0.2.1 [INFO] [stderr] Compiling stable_deref_trait v1.1.1 [INFO] [stderr] Compiling unicode-xid v0.1.0 [INFO] [stderr] Compiling crossbeam-utils v0.5.0 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling rayon-core v1.7.0 [INFO] [stderr] Compiling regex-syntax v0.6.18 [INFO] [stderr] Compiling matrixmultiply v0.1.15 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Compiling syn v0.15.44 [INFO] [stderr] Compiling rawpointer v0.1.0 [INFO] [stderr] Compiling ndarray v0.12.1 [INFO] [stderr] Compiling safemem v0.2.0 [INFO] [stderr] Compiling bit-vec v0.6.2 [INFO] [stderr] Compiling fixedbitset v0.1.9 [INFO] [stderr] Compiling same-file v1.0.6 [INFO] [stderr] Compiling ordermap v0.3.5 [INFO] [stderr] Compiling bio v0.28.2 [INFO] [stderr] Compiling bytecount v0.3.2 [INFO] [stderr] Compiling strum v0.13.0 [INFO] [stderr] Compiling oorandom v11.1.1 [INFO] [stderr] Compiling scoped_threadpool v0.1.9 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling num-traits v0.2.11 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling crossbeam-utils v0.6.6 [INFO] [stderr] Compiling num-integer v0.1.42 [INFO] [stderr] Compiling itertools v0.9.0 [INFO] [stderr] Compiling itertools v0.7.11 [INFO] [stderr] Compiling owning_ref v0.4.1 [INFO] [stderr] Compiling rand_core v0.3.1 [INFO] [stderr] Compiling walkdir v2.3.1 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling bv v0.10.0 [INFO] [stderr] Compiling bit-set v0.5.2 [INFO] [stderr] Compiling lock_api v0.1.5 [INFO] [stderr] Compiling parking_lot_core v0.3.1 [INFO] [stderr] Compiling cast v0.2.3 [INFO] [stderr] Compiling aho-corasick v0.7.10 [INFO] [stderr] Compiling csv-core v0.1.10 [INFO] [stderr] Compiling rand v0.5.6 [INFO] [stderr] Compiling rand v0.4.6 [INFO] [stderr] Compiling num_cpus v1.13.0 [INFO] [stderr] Compiling slice-deque v0.1.16 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling regex-automata v0.1.9 [INFO] [stderr] Compiling fxhash v0.2.1 [INFO] [stderr] Compiling clap v2.33.1 [INFO] [stderr] Compiling petgraph v0.4.13 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling buf_redux v0.7.1 [INFO] [stderr] Compiling rand v0.3.23 [INFO] [stderr] Compiling statrs v0.9.0 [INFO] [stderr] Compiling quote v0.6.13 [INFO] [stderr] Compiling criterion-plot v0.4.2 [INFO] [stderr] Compiling crossbeam-epoch v0.5.2 [INFO] [stderr] Compiling crossbeam-epoch v0.6.1 [INFO] [stderr] Compiling parking_lot v0.6.4 [INFO] [stderr] Compiling crossbeam-deque v0.5.2 [INFO] [stderr] Compiling plotters v0.2.15 [INFO] [stderr] Compiling itertools-num v0.1.3 [INFO] [stderr] Compiling ordered-float v1.0.2 [INFO] [stderr] Compiling approx v0.3.2 [INFO] [stderr] Compiling rayon v1.3.0 [INFO] [stderr] Compiling regex v1.3.9 [INFO] [stderr] Compiling crossbeam-channel v0.2.6 [INFO] [stderr] Compiling crossbeam v0.4.1 [INFO] [stderr] Compiling strum_macros v0.13.0 [INFO] [stderr] Compiling serde_derive v1.0.111 [INFO] [stderr] Compiling derive-new v0.5.8 [INFO] [stderr] Compiling bstr v0.2.13 [INFO] [stderr] Compiling serde_json v1.0.53 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling multimap v0.4.0 [INFO] [stderr] Compiling bio-types v0.6.0 [INFO] [stderr] Compiling toml v0.5.6 [INFO] [stderr] Compiling seq_io v0.3.0 [INFO] [stderr] Compiling csv v1.1.3 [INFO] [stderr] Compiling tinytemplate v1.1.0 [INFO] [stderr] Compiling criterion v0.3.2 [INFO] [stderr] Compiling needletail v0.3.2 (/opt/rustwide/workdir) [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 2m 31s [INFO] running `"docker" "inspect" "ab2eb3b26d6b9605b27728e852c95d4140bd3296ce423c19d3a984e08f9f607a"` [INFO] running `"docker" "rm" "-f" "ab2eb3b26d6b9605b27728e852c95d4140bd3296ce423c19d3a984e08f9f607a"` [INFO] [stdout] ab2eb3b26d6b9605b27728e852c95d4140bd3296ce423c19d3a984e08f9f607a [INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+1.44.0" "test" "--frozen"` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 74376eda9b68c5ce49cf8e8a368af1c06cbba2402428c980dc9466682fade6f6 [INFO] running `"docker" "start" "-a" "74376eda9b68c5ce49cf8e8a368af1c06cbba2402428c980dc9466682fade6f6"` [INFO] [stderr] sudo: setrlimit(RLIMIT_CORE): Operation not permitted [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.30s [INFO] [stderr] Running /opt/rustwide/target/debug/deps/needletail-0a4d0b169ac21786 [INFO] [stdout] [INFO] [stdout] running 25 tests [INFO] [stdout] test bitkmer::tests::can_kmerize ... ok [INFO] [stdout] test formats::fasta::test::test_premature_endings ... ok [INFO] [stdout] test formats::fasta::test::test_reader ... ok [INFO] [stdout] test bitkmer::tests::test_bitmer_to_bytes ... ok [INFO] [stdout] test bitkmer::tests::test_iterator ... ok [INFO] [stdout] test bitkmer::tests::test_bytes_to_bitkmer ... ok [INFO] [stdout] test formats::fastq::test::test_empty_records ... ok [INFO] [stdout] test formats::fasta::test::test_callback ... ok [INFO] [stdout] test formats::fasta::test::test_wrapped_fasta ... ok [INFO] [stdout] test formats::fasta::test::test_empty_records ... ok [INFO] [stdout] test bitkmer::tests::test_minimizer ... ok [INFO] [stdout] test bitkmer::tests::test_reverse_complement ... ok [INFO] [stdout] test formats::fastq::test::test_fastq_across_buffer ... ok [INFO] [stdout] test formats::fastq::test::test_fastq ... ok [INFO] [stdout] test sequence::tests::can_minimize ... ok [INFO] [stdout] test sequence::tests::test_complement ... ok [INFO] [stdout] test sequence::tests::test_quality_mask ... ok [INFO] [stdout] test formats::fastq::test::test_fastq_endings ... ok [INFO] [stdout] test util::tests::test_memchr_both ... ok [INFO] [stdout] test sequence::test_normalize ... ok [INFO] [stdout] test formats::fastq::test::test_mismatched_lengths ... ok [INFO] [stdout] test formats::fasta::test::test_compressed ... ok [INFO] [stdout] test sequence::tests::can_canonicalize ... ok [INFO] [stdout] test formats::fastq::test::test_premature_endings ... ok [INFO] [stdout] test util::tests::test_memchr_both_last ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 25 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] [stderr] Running /opt/rustwide/target/debug/deps/format_specimens-c53b5ee7af50bc35 [INFO] [stdout] [INFO] [stdout] running 2 tests [INFO] [stdout] test test_specimen_fasta ... ok [INFO] [stdout] test test_specimen_fastq ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 2 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] [stderr] Doc-tests needletail [INFO] [stdout] [INFO] [stdout] running 4 tests [INFO] [stdout] test src/kmer.rs - kmer::CanonicalKmers::new (line 64) ... ok [INFO] [stdout] test src/sequence.rs - sequence::Sequence::normalize (line 245) ... ok [INFO] [stdout] test src/sequence.rs - sequence::Sequence::reverse_complement (line 227) ... ok [INFO] [stdout] test src/lib.rs - (line 6) ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 4 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] running `"docker" "inspect" "74376eda9b68c5ce49cf8e8a368af1c06cbba2402428c980dc9466682fade6f6"` [INFO] running `"docker" "rm" "-f" "74376eda9b68c5ce49cf8e8a368af1c06cbba2402428c980dc9466682fade6f6"` [INFO] [stdout] 74376eda9b68c5ce49cf8e8a368af1c06cbba2402428c980dc9466682fade6f6