[INFO] updating cached repository https://github.com/yitapi/analyze_amplicons [INFO] running `"git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "-c" "remote.origin.fetch=refs/heads/*:refs/heads/*" "fetch" "origin" "--force" "--prune"` [INFO] running `"git" "rev-parse" "HEAD"` [INFO] [stdout] be4f0e4f49256237f3026919a2742eb16e73dd75 [INFO] testing yitapi/analyze_amplicons against 1.44.0 for beta-1.45-1 [INFO] running `"git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fyitapi%2Fanalyze_amplicons" "/workspace/builds/worker-9/source"` [INFO] [stderr] Cloning into '/workspace/builds/worker-9/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/yitapi/analyze_amplicons on toolchain 1.44.0 [INFO] running `"/workspace/cargo-home/bin/cargo" "+1.44.0" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] started tweaking git repo https://github.com/yitapi/analyze_amplicons [INFO] finished tweaking git repo https://github.com/yitapi/analyze_amplicons [INFO] tweaked toml for git repo https://github.com/yitapi/analyze_amplicons written to /workspace/builds/worker-9/source/Cargo.toml [INFO] crate git repo https://github.com/yitapi/analyze_amplicons already has a lockfile, it will not be regenerated [INFO] running `"/workspace/cargo-home/bin/cargo" "+1.44.0" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+1.44.0" "build" "--frozen"` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 8d5dff8d02962d74914cb523a39e64c260b5508ebfde3a7298b6cf188da53d17 [INFO] running `"docker" "start" "-a" "8d5dff8d02962d74914cb523a39e64c260b5508ebfde3a7298b6cf188da53d17"` [INFO] [stderr] sudo: setrlimit(RLIMIT_CORE): Operation not permitted [INFO] [stderr] Compiling num-traits v0.1.36 [INFO] [stderr] Compiling either v1.0.2 [INFO] [stderr] Compiling bit-vec v0.4.3 [INFO] [stderr] Compiling lazy_static v0.2.2 [INFO] [stderr] Compiling quick-error v1.1.0 [INFO] [stderr] Compiling memchr v1.0.1 [INFO] [stderr] Compiling itertools v0.5.9 [INFO] [stderr] Compiling csv v0.15.0 [INFO] [stderr] Compiling bit-set v0.4.0 [INFO] [stderr] Compiling num-integer v0.1.32 [INFO] [stderr] Compiling num-complex v0.1.35 [INFO] [stderr] Compiling itertools-num v0.1.1 [INFO] [stderr] Compiling ordered-float v0.3.0 [INFO] [stderr] Compiling num-bigint v0.1.35 [INFO] [stderr] Compiling num-iter v0.1.32 [INFO] [stderr] Compiling num-rational v0.1.35 [INFO] [stderr] Compiling num v0.1.36 [INFO] [stderr] Compiling nalgebra v0.10.1 [INFO] [stderr] Compiling bio v0.10.0 (https://github.com/yitapi/rust-bio#24e457b1) [INFO] [stderr] Compiling analyze_amplicon v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/main.rs:92:22 [INFO] [stderr] | [INFO] [stderr] 92 | let mut output = try!(File::create(output_file)); [INFO] [stderr] | ^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(deprecated)]` on by default [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/main.rs:137:9 [INFO] [stderr] | [INFO] [stderr] 137 | try!(write!(output, "{} {} {}\n", pac, hamming(&pac, &wt_pac), counts)); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/main.rs:86:101 [INFO] [stderr] | [INFO] [stderr] 86 | fn data_stat(results: &HashMap)>, output_file: &str) -> Result> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stderr] [INFO] [stderr] warning: unused `std::result::Result` that must be used [INFO] [stderr] --> src/main.rs:350:5 [INFO] [stderr] | [INFO] [stderr] 350 | data_stat(&results, &args[4]); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_must_use)]` on by default [INFO] [stderr] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stderr] [INFO] [stderr] warning: 4 warnings emitted [INFO] [stderr] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 25.57s [INFO] running `"docker" "inspect" "8d5dff8d02962d74914cb523a39e64c260b5508ebfde3a7298b6cf188da53d17"` [INFO] running `"docker" "rm" "-f" "8d5dff8d02962d74914cb523a39e64c260b5508ebfde3a7298b6cf188da53d17"` [INFO] [stdout] 8d5dff8d02962d74914cb523a39e64c260b5508ebfde3a7298b6cf188da53d17 [INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+1.44.0" "test" "--frozen" "--no-run"` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] a1dafa9b6913874386df1204bb64655b7a16ef18ab24908e7ed33468f28acb6b [INFO] running `"docker" "start" "-a" "a1dafa9b6913874386df1204bb64655b7a16ef18ab24908e7ed33468f28acb6b"` [INFO] [stderr] sudo: setrlimit(RLIMIT_CORE): Operation not permitted [INFO] [stderr] Compiling analyze_amplicon v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/main.rs:92:22 [INFO] [stderr] | [INFO] [stderr] 92 | let mut output = try!(File::create(output_file)); [INFO] [stderr] | ^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(deprecated)]` on by default [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/main.rs:137:9 [INFO] [stderr] | [INFO] [stderr] 137 | try!(write!(output, "{} {} {}\n", pac, hamming(&pac, &wt_pac), counts)); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/main.rs:86:101 [INFO] [stderr] | [INFO] [stderr] 86 | fn data_stat(results: &HashMap)>, output_file: &str) -> Result> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stderr] [INFO] [stderr] warning: unused `std::result::Result` that must be used [INFO] [stderr] --> src/main.rs:350:5 [INFO] [stderr] | [INFO] [stderr] 350 | data_stat(&results, &args[4]); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_must_use)]` on by default [INFO] [stderr] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stderr] [INFO] [stderr] warning: 4 warnings emitted [INFO] [stderr] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 1.16s [INFO] running `"docker" "inspect" "a1dafa9b6913874386df1204bb64655b7a16ef18ab24908e7ed33468f28acb6b"` [INFO] running `"docker" "rm" "-f" "a1dafa9b6913874386df1204bb64655b7a16ef18ab24908e7ed33468f28acb6b"` [INFO] [stdout] a1dafa9b6913874386df1204bb64655b7a16ef18ab24908e7ed33468f28acb6b [INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+1.44.0" "test" "--frozen"` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 0ab54d7d3e5562b476a5a83fb54845d8de2795fa8a6ee9a143bf2879a25bfa9e [INFO] running `"docker" "start" "-a" "0ab54d7d3e5562b476a5a83fb54845d8de2795fa8a6ee9a143bf2879a25bfa9e"` [INFO] [stderr] sudo: setrlimit(RLIMIT_CORE): Operation not permitted [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/main.rs:92:22 [INFO] [stderr] | [INFO] [stderr] 92 | let mut output = try!(File::create(output_file)); [INFO] [stderr] | ^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(deprecated)]` on by default [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/main.rs:137:9 [INFO] [stderr] | [INFO] [stderr] 137 | try!(write!(output, "{} {} {}\n", pac, hamming(&pac, &wt_pac), counts)); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/main.rs:86:101 [INFO] [stderr] | [INFO] [stderr] 86 | fn data_stat(results: &HashMap)>, output_file: &str) -> Result> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stderr] [INFO] [stderr] warning: unused `std::result::Result` that must be used [INFO] [stderr] --> src/main.rs:350:5 [INFO] [stderr] | [INFO] [stderr] 350 | data_stat(&results, &args[4]); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_must_use)]` on by default [INFO] [stderr] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stderr] [INFO] [stderr] warning: 4 warnings emitted [INFO] [stderr] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.10s [INFO] [stderr] Running /opt/rustwide/target/debug/deps/analyze_amplicon-5a5a6a7e4fd94f16 [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] running `"docker" "inspect" "0ab54d7d3e5562b476a5a83fb54845d8de2795fa8a6ee9a143bf2879a25bfa9e"` [INFO] running `"docker" "rm" "-f" "0ab54d7d3e5562b476a5a83fb54845d8de2795fa8a6ee9a143bf2879a25bfa9e"` [INFO] [stdout] 0ab54d7d3e5562b476a5a83fb54845d8de2795fa8a6ee9a143bf2879a25bfa9e