[INFO] updating cached repository https://github.com/laeblab/crispy
[INFO] running `"git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "-c" "remote.origin.fetch=refs/heads/*:refs/heads/*" "fetch" "origin" "--force" "--prune"`
[INFO] running `"git" "rev-parse" "HEAD"`
[INFO] [stdout] bd6c9152d0caa2afac5ecdc9d5c70c0a8eb8dd00
[INFO] testing laeblab/crispy against 1.44.0 for beta-1.45-1
[INFO] running `"git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Flaeblab%2Fcrispy" "/workspace/builds/worker-1/source"`
[INFO] [stderr] Cloning into '/workspace/builds/worker-1/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/laeblab/crispy on toolchain 1.44.0
[INFO] running `"/workspace/cargo-home/bin/cargo" "+1.44.0" "read-manifest" "--manifest-path" "Cargo.toml"`
[INFO] started tweaking git repo https://github.com/laeblab/crispy
[INFO] finished tweaking git repo https://github.com/laeblab/crispy
[INFO] tweaked toml for git repo https://github.com/laeblab/crispy written to /workspace/builds/worker-1/source/Cargo.toml
[INFO] crate git repo https://github.com/laeblab/crispy already has a lockfile, it will not be regenerated
[INFO] running `"/workspace/cargo-home/bin/cargo" "+1.44.0" "fetch" "--locked" "--manifest-path" "Cargo.toml"`
[INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+1.44.0" "build" "--frozen"`
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] [stdout] 11928d0f37f2d5242f079ddd210ffcd43a8727c9bfd1c23541a01b5a5a39b8e3
[INFO] running `"docker" "start" "-a" "11928d0f37f2d5242f079ddd210ffcd43a8727c9bfd1c23541a01b5a5a39b8e3"`
[INFO] [stderr] sudo: setrlimit(RLIMIT_CORE): Operation not permitted
[INFO] [stderr]    Compiling libc v0.2.62
[INFO] [stderr]    Compiling proc-macro2 v1.0.5
[INFO] [stderr]    Compiling autocfg v0.1.6
[INFO] [stderr]    Compiling syn v1.0.5
[INFO] [stderr]    Compiling memchr v2.2.1
[INFO] [stderr]    Compiling serde v1.0.101
[INFO] [stderr]    Compiling byteorder v1.3.2
[INFO] [stderr]    Compiling proc-macro2 v0.4.30
[INFO] [stderr]    Compiling arrayvec v0.4.12
[INFO] [stderr]    Compiling regex-syntax v0.6.12
[INFO] [stderr]    Compiling cc v1.0.45
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling scopeguard v1.0.0
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]    Compiling matrixmultiply v0.1.15
[INFO] [stderr]    Compiling syn v0.15.44
[INFO] [stderr]    Compiling ryu v1.0.0
[INFO] [stderr]    Compiling unicode-width v0.1.6
[INFO] [stderr]    Compiling rawpointer v0.1.0
[INFO] [stderr]    Compiling unicode-segmentation v1.3.0
[INFO] [stderr]    Compiling bitflags v1.2.0
[INFO] [stderr]    Compiling ndarray v0.12.1
[INFO] [stderr]    Compiling rayon-core v1.6.0
[INFO] [stderr]    Compiling rustc-demangle v0.1.16
[INFO] [stderr]    Compiling bit-vec v0.5.1
[INFO] [stderr]    Compiling bio v0.28.2
[INFO] [stderr]    Compiling fixedbitset v0.1.9
[INFO] [stderr]    Compiling ordermap v0.3.5
[INFO] [stderr]    Compiling itoa v0.4.4
[INFO] [stderr]    Compiling number_prefix v0.3.0
[INFO] [stderr]    Compiling strum v0.13.0
[INFO] [stderr]    Compiling bytecount v0.3.2
[INFO] [stderr]    Compiling strsim v0.8.0
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling thread_local v0.3.6
[INFO] [stderr]    Compiling crossbeam-utils v0.6.6
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling itertools v0.7.11
[INFO] [stderr]    Compiling bv v0.10.0
[INFO] [stderr]    Compiling error-chain v0.12.1
[INFO] [stderr]    Compiling textwrap v0.11.0
[INFO] [stderr]    Compiling num-traits v0.2.8
[INFO] [stderr]    Compiling num-complex v0.2.3
[INFO] [stderr]    Compiling num-integer v0.1.41
[INFO] [stderr]    Compiling heck v0.3.1
[INFO] [stderr]    Compiling bit-set v0.5.1
[INFO] [stderr]    Compiling petgraph v0.4.13
[INFO] [stderr]    Compiling crossbeam-queue v0.1.2
[INFO] [stderr]    Compiling memoffset v0.5.1
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling rand v0.4.6
[INFO] [stderr]    Compiling num_cpus v1.10.1
[INFO] [stderr]    Compiling termios v0.3.1
[INFO] [stderr]    Compiling clicolors-control v1.0.1
[INFO] [stderr]    Compiling atty v0.2.13
[INFO] [stderr]    Compiling regex-automata v0.1.8
[INFO] [stderr]    Compiling fxhash v0.2.1
[INFO] [stderr]    Compiling quote v1.0.2
[INFO] [stderr]    Compiling crossbeam-epoch v0.7.2
[INFO] [stderr]    Compiling aho-corasick v0.7.6
[INFO] [stderr]    Compiling csv-core v0.1.6
[INFO] [stderr]    Compiling quote v0.6.13
[INFO] [stderr]    Compiling backtrace-sys v0.1.31
[INFO] [stderr]    Compiling crossbeam-deque v0.7.1
[INFO] [stderr]    Compiling rand v0.3.23
[INFO] [stderr]    Compiling statrs v0.9.0
[INFO] [stderr]    Compiling backtrace v0.3.38
[INFO] [stderr]    Compiling approx v0.3.2
[INFO] [stderr]    Compiling ordered-float v1.0.2
[INFO] [stderr]    Compiling itertools-num v0.1.3
[INFO] [stderr]    Compiling rayon v1.2.0
[INFO] [stderr]    Compiling regex v1.3.1
[INFO] [stderr]    Compiling console v0.9.0
[INFO] [stderr]    Compiling indicatif v0.12.0
[INFO] [stderr]    Compiling serde_derive v1.0.101
[INFO] [stderr]    Compiling strum_macros v0.13.0
[INFO] [stderr]    Compiling vec_map v0.8.1
[INFO] [stderr]    Compiling bstr v0.2.8
[INFO] [stderr]    Compiling bio-types v0.5.1
[INFO] [stderr]    Compiling multimap v0.4.0
[INFO] [stderr]    Compiling clap v2.33.0
[INFO] [stderr]    Compiling csv v1.1.1
[INFO] [stderr]    Compiling crispyr v0.2.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 2m 07s
[INFO] running `"docker" "inspect" "11928d0f37f2d5242f079ddd210ffcd43a8727c9bfd1c23541a01b5a5a39b8e3"`
[INFO] running `"docker" "rm" "-f" "11928d0f37f2d5242f079ddd210ffcd43a8727c9bfd1c23541a01b5a5a39b8e3"`
[INFO] [stdout] 11928d0f37f2d5242f079ddd210ffcd43a8727c9bfd1c23541a01b5a5a39b8e3
[INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+1.44.0" "test" "--frozen" "--no-run"`
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] [stdout] 0e1ec42569eab0f57a5f9d49c664e317ccef6f35f353070d5a68529891bb5490
[INFO] running `"docker" "start" "-a" "0e1ec42569eab0f57a5f9d49c664e317ccef6f35f353070d5a68529891bb5490"`
[INFO] [stderr] sudo: setrlimit(RLIMIT_CORE): Operation not permitted
[INFO] [stderr]    Compiling crispyr v0.2.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 8.22s
[INFO] running `"docker" "inspect" "0e1ec42569eab0f57a5f9d49c664e317ccef6f35f353070d5a68529891bb5490"`
[INFO] running `"docker" "rm" "-f" "0e1ec42569eab0f57a5f9d49c664e317ccef6f35f353070d5a68529891bb5490"`
[INFO] [stdout] 0e1ec42569eab0f57a5f9d49c664e317ccef6f35f353070d5a68529891bb5490
[INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+1.44.0" "test" "--frozen"`
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] [stdout] 357038fc7d7072260dbb3ee08bd56141ef2e0b241011907bf561a9156d6faa80
[INFO] running `"docker" "start" "-a" "357038fc7d7072260dbb3ee08bd56141ef2e0b241011907bf561a9156d6faa80"`
[INFO] [stderr] sudo: setrlimit(RLIMIT_CORE): Operation not permitted
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 0.25s
[INFO] [stderr]      Running /opt/rustwide/target/debug/deps/crispyr-3febfd8989e0de65
[INFO] [stderr]      Running /opt/rustwide/target/debug/deps/crispyr-1f8e6dd036a76345
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]      Running /opt/rustwide/target/debug/deps/enzyme-37f2bba8a9677575
[INFO] [stdout] running 3 tests
[INFO] [stdout] test test_enzyme_mad7 ... ok
[INFO] [stdout] test test_enzyme_unknown ... ok
[INFO] [stdout] test test_enzyme_cas9 ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 3 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
[INFO] [stdout] 
[INFO] [stderr]      Running /opt/rustwide/target/debug/deps/index-f654ef0f9f0145e1
[INFO] [stdout] 
[INFO] [stdout] running 12 tests
[INFO] [stdout] test test_position_to_u64_forward_neg_pos_no_ref ... ok
[INFO] [stderr]      Running /opt/rustwide/target/debug/deps/iupac-1e0c72ab74f72fb3
[INFO] [stdout] test test_position_to_u64_forward_zeroes ... ok
[INFO] [stdout] test test_position_to_u64_reverse_pos_and_ref ... ok
[INFO] [stdout] test test_position_to_u64_reverse_ref_no_pos ... ok
[INFO] [stdout] test test_position_to_u64_reverse_zeroes ... ok
[INFO] [stdout] test test_position_to_u64_forward_pos_and_ref ... ok
[INFO] [stdout] test test_position_to_u64_reverse_pos_no_ref ... ok
[INFO] [stdout] test test_position_to_u64_forward_neg_pos_and_ref ... ok
[INFO] [stdout] test test_position_to_u64_forward_pos_no_ref ... ok
[INFO] [stdout] test test_position_to_u64_reverse_neg_pos_no_ref ... ok
[INFO] [stdout] test test_position_to_u64_reverse_neg_pos_and_ref ... ok
[INFO] [stdout] test test_position_to_u64_forward_ref_no_pos ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 12 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 3 tests
[INFO] [stderr]      Running /opt/rustwide/target/debug/deps/pam-58c1c4fc07b7fa34
[INFO] [stdout] test test_basic_nucleotides ... ok
[INFO] [stdout] test test_degenerate_nucleotide ... ok
[INFO] [stdout] test test_non_nucleotide_values ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 3 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 15 tests
[INFO] [stdout] test test_empty_head_pam_kmer_slice ... ok
[INFO] [stdout] test test_empty_head_pam_matches ... ok
[INFO] [stdout] test test_empty_tail_pam_kmer_slice ... ok
[INFO] [stdout] test test_empty_tail_pam_matches ... ok
[INFO] [stdout] test test_enzyme_kmer_cas9 ... ok
[INFO] [stdout] test test_head_kmer ... ok
[INFO] [stdout] test test_head_pam_matches ... ok
[INFO] [stdout] test test_pam_position ... ok
[INFO] [stdout] test test_enzyme_kmer_mut_cas9 ... ok
[INFO] [stdout] test test_to_string ... ok
[INFO] [stdout] test test_tail_pam_matches ... ok
[INFO] [stdout] test test_enzyme_kmer_mad7 ... ok
[INFO] [stdout] test test_pam_lengths ... ok
[INFO] [stdout] test test_enzyme_kmer_mut_mad7 ... ok
[INFO] [stdout] test test_tail_kmer ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 15 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests crispyr
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
[INFO] [stdout] 
[INFO] running `"docker" "inspect" "357038fc7d7072260dbb3ee08bd56141ef2e0b241011907bf561a9156d6faa80"`
[INFO] running `"docker" "rm" "-f" "357038fc7d7072260dbb3ee08bd56141ef2e0b241011907bf561a9156d6faa80"`
[INFO] [stdout] 357038fc7d7072260dbb3ee08bd56141ef2e0b241011907bf561a9156d6faa80