[INFO] crate umgap 0.3.3 is already in cache [INFO] testing umgap-0.3.3 against beta-2019-09-28 for beta-1.39-1 [INFO] extracting crate umgap 0.3.3 into work/builds/worker-3/source [INFO] validating manifest of crates.io crate umgap 0.3.3 on toolchain beta-2019-09-28 [INFO] running `"/big/crater/work/cargo-home/bin/cargo" "+beta-2019-09-28" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] started tweaking crates.io crate umgap 0.3.3 [INFO] finished tweaking crates.io crate umgap 0.3.3 [INFO] tweaked toml for crates.io crate umgap 0.3.3 written to work/builds/worker-3/source/Cargo.toml [INFO] running `"/big/crater/work/cargo-home/bin/cargo" "+beta-2019-09-28" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update"` [INFO] running `"/big/crater/work/cargo-home/bin/cargo" "+beta-2019-09-28" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] running `"docker" "create" "-v" "/big/crater/work/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/big/crater/work/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/big/crater/work/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/big/crater/work/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2019-09-28" "build" "--frozen"` [INFO] [stdout] 9d8cda8110853607ada4f15bbeefcf2d8a3d1859b5327f3207094b527549d639 [INFO] running `"docker" "start" "-a" "9d8cda8110853607ada4f15bbeefcf2d8a3d1859b5327f3207094b527549d639"` [INFO] [stderr] Compiling syn v0.15.44 [INFO] [stderr] Compiling strum v0.11.0 [INFO] [stderr] Compiling error-chain v0.12.1 [INFO] [stderr] Compiling regex-automata v0.1.8 [INFO] [stderr] Compiling ordered-float v1.0.2 [INFO] [stderr] Compiling fst v0.3.5 [INFO] [stderr] Compiling bstr v0.2.8 [INFO] [stderr] Compiling csv v1.1.1 [INFO] [stderr] Compiling structopt-derive v0.2.18 [INFO] [stderr] Compiling strum_macros v0.11.0 [INFO] [stderr] Compiling structopt v0.2.18 [INFO] [stderr] Compiling umgap v0.3.3 (/opt/rustwide/workdir) [INFO] [stderr] warning: use of deprecated item 'core::str::::trim_right': superseded by `trim_end` [INFO] [stderr] --> src/taxon.rs:88:34 [INFO] [stderr] | [INFO] [stderr] 88 | let split: Vec<&str> = s.trim_right().split('\t').collect(); [INFO] [stderr] | ^^^^^^^^^^ help: replace the use of the deprecated item: `trim_end` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(deprecated)]` on by default [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/main.rs:631:3 [INFO] [stderr] | [INFO] [stderr] 631 | try!(writer.write_record(fasta::Record { [INFO] [stderr] | ^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(deprecated)]` on by default [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/main.rs:284:29 [INFO] [stderr] | [INFO] [stderr] 284 | let aggregator: Result> = match (args.method, args.strategy) { [INFO] [stderr] | ^^^^^^^^^^^^^^^ help: use `dyn`: `dyn agg::Aggregator` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stderr] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 16.33s [INFO] running `"docker" "inspect" "9d8cda8110853607ada4f15bbeefcf2d8a3d1859b5327f3207094b527549d639"` [INFO] running `"docker" "rm" "-f" "9d8cda8110853607ada4f15bbeefcf2d8a3d1859b5327f3207094b527549d639"` [INFO] [stdout] 9d8cda8110853607ada4f15bbeefcf2d8a3d1859b5327f3207094b527549d639 [INFO] running `"docker" "create" "-v" "/big/crater/work/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/big/crater/work/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/big/crater/work/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/big/crater/work/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2019-09-28" "test" "--frozen" "--no-run"` [INFO] [stdout] d7dd15ef9938b948f79d278aa94c5d6460ef28571a2f70f84d9a8a5a13612cfb [INFO] running `"docker" "start" "-a" "d7dd15ef9938b948f79d278aa94c5d6460ef28571a2f70f84d9a8a5a13612cfb"` [INFO] [stderr] Compiling assert_matches v1.3.0 [INFO] [stderr] Compiling umgap v0.3.3 (/opt/rustwide/workdir) [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/main.rs:631:3 [INFO] [stderr] | [INFO] [stderr] 631 | try!(writer.write_record(fasta::Record { [INFO] [stderr] | ^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(deprecated)]` on by default [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/main.rs:284:29 [INFO] [stderr] | [INFO] [stderr] 284 | let aggregator: Result> = match (args.method, args.strategy) { [INFO] [stderr] | ^^^^^^^^^^^^^^^ help: use `dyn`: `dyn agg::Aggregator` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/agg.rs:58:47 [INFO] [stderr] | [INFO] [stderr] 58 | fn aggregators(by_id: &TaxonList) -> Vec> { [INFO] [stderr] | ^^^^^^^^^^ help: use `dyn`: `dyn Aggregator` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'core::str::::trim_right': superseded by `trim_end` [INFO] [stderr] --> src/taxon.rs:88:34 [INFO] [stderr] | [INFO] [stderr] 88 | let split: Vec<&str> = s.trim_right().split('\t').collect(); [INFO] [stderr] | ^^^^^^^^^^ help: replace the use of the deprecated item: `trim_end` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(deprecated)]` on by default [INFO] [stderr] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 3.07s [INFO] running `"docker" "inspect" "d7dd15ef9938b948f79d278aa94c5d6460ef28571a2f70f84d9a8a5a13612cfb"` [INFO] running `"docker" "rm" "-f" "d7dd15ef9938b948f79d278aa94c5d6460ef28571a2f70f84d9a8a5a13612cfb"` [INFO] [stdout] d7dd15ef9938b948f79d278aa94c5d6460ef28571a2f70f84d9a8a5a13612cfb [INFO] running `"docker" "create" "-v" "/big/crater/work/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/big/crater/work/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/big/crater/work/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/big/crater/work/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2019-09-28" "test" "--frozen"` [INFO] [stdout] 751e66651ef7a67d547d895bd380dd1797019fcc26cbaecb019bae654c494de0 [INFO] running `"docker" "start" "-a" "751e66651ef7a67d547d895bd380dd1797019fcc26cbaecb019bae654c494de0"` [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 0.04s [INFO] [stderr] Running /opt/rustwide/target/debug/deps/umgap-94b1680c5eb467c5 [INFO] [stdout] [INFO] [stdout] running 38 tests [INFO] [stdout] test dna::tests::test_strand_frames ... ok [INFO] [stdout] test dna::tests::test_strand_from ... ok [INFO] [stdout] test dna::tests::test_strand_reversed ... ok [INFO] [stdout] test dna::translation::tests::test_number_of_codons ... ok [INFO] [stdout] test rmq::rmq::tests::test_block_minima ... ok [INFO] [stdout] test rmq::rmq::tests::test_rmq_more_blocks ... ok [INFO] [stdout] test rmq::rmq::tests::test_rmq_single_block ... ok [INFO] [stdout] test rmq::rmq::tests::test_sparse ... ok [INFO] [stdout] test rmq::rmq::tests::test_rmq_two_blocks ... ok [INFO] [stdout] test rmq::rmq::tests::test_rmq_three_blocks ... ok [INFO] [stdout] test rmq::rmq::tests::test_wave_of_33 ... ok [INFO] [stdout] test rmq::rmq::tests::test_wave_of_65 ... ok [INFO] [stdout] test rmq::lca::tests::test_three_on_triangle ... ok [INFO] [stdout] test taxon::tests::test_euler_tour ... ok [INFO] [stdout] test dna::translation::tests::test_translate ... ok [INFO] [stdout] test rmq::lca::tests::test_two_on_fork ... ok [INFO] [stdout] test rmq::lca::tests::test_with_deeper_interns ... ok [INFO] [stdout] test rmq::mix::tests::test_full_rtl ... ok [INFO] [stdout] test rmq::mix::tests::test_one_half ... ok [INFO] [stdout] test rmq::lca::tests::test_two_on_same_path ... ok [INFO] [stdout] test dna::translation::tests::test_translation_table_parsing ... ok [INFO] [stdout] test taxon::tests::test_taxon_parsing ... ok [INFO] [stdout] test rmq::mix::tests::test_full_lca ... ok [INFO] [stdout] test taxon::tests::test_lineage ... ok [INFO] [stdout] test rmq::rtl::tests::favouring_root ... ok [INFO] [stdout] test rmq::rtl::tests::leaning_close ... ok [INFO] [stdout] test rmq::rtl::tests::test_all_on_same_path ... ok [INFO] [stdout] test rmq::rtl::tests::non_deterministic ... ok [INFO] [stdout] test tree::lca::tests::test_three_on_triangle ... ok [INFO] [stdout] test taxon::tests::test_taxon_list ... ok [INFO] [stdout] test tree::lca::tests::test_two_on_fork ... ok [INFO] [stdout] test tree::mix::tests::test_two_thirds ... ok [INFO] [stdout] test tree::lca::tests::test_two_on_same_path ... ok [INFO] [stdout] test tree::mix::tests::test_full_rtl ... ok [INFO] [stdout] test tree::mix::tests::test_full_lca ... ok [INFO] [stdout] test agg::tests::test_singleton_is_singleton ... ok [INFO] [stdout] test agg::tests::test_empty_query ... ok [INFO] [stdout] test agg::tests::test_invalid_taxa ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 38 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] [stderr] Running /opt/rustwide/target/debug/deps/umgap-6206b89e536bcd4f [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] [stderr] Doc-tests umgap [INFO] [stdout] [INFO] [stdout] running 1 test [INFO] [stdout] test src/taxon.rs - taxon::Taxon::from_str (line 75) ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 1 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] running `"docker" "inspect" "751e66651ef7a67d547d895bd380dd1797019fcc26cbaecb019bae654c494de0"` [INFO] running `"docker" "rm" "-f" "751e66651ef7a67d547d895bd380dd1797019fcc26cbaecb019bae654c494de0"` [INFO] [stdout] 751e66651ef7a67d547d895bd380dd1797019fcc26cbaecb019bae654c494de0