[INFO] crate smafa 0.5.0 is already in cache
[INFO] testing smafa-0.5.0 against beta-2019-09-28 for beta-1.39-1
[INFO] extracting crate smafa 0.5.0 into work/builds/worker-3/source
[INFO] validating manifest of crates.io crate smafa 0.5.0 on toolchain beta-2019-09-28
[INFO] running `"/big/crater/work/cargo-home/bin/cargo" "+beta-2019-09-28" "read-manifest" "--manifest-path" "Cargo.toml"`
[INFO] started tweaking crates.io crate smafa 0.5.0
[INFO] finished tweaking crates.io crate smafa 0.5.0
[INFO] tweaked toml for crates.io crate smafa 0.5.0 written to work/builds/worker-3/source/Cargo.toml
[INFO] running `"/big/crater/work/cargo-home/bin/cargo" "+beta-2019-09-28" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update"`
[INFO] running `"/big/crater/work/cargo-home/bin/cargo" "+beta-2019-09-28" "fetch" "--locked" "--manifest-path" "Cargo.toml"`
[INFO] running `"docker" "create" "-v" "/big/crater/work/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/big/crater/work/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/big/crater/work/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/big/crater/work/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2019-09-28" "build" "--frozen"`
[INFO] [stdout] fd1f6f85bf54ae8e0466325f0f961b38e751ff677ac3910e8031f90d27cd01e2
[INFO] running `"docker" "start" "-a" "fd1f6f85bf54ae8e0466325f0f961b38e751ff677ac3910e8031f90d27cd01e2"`
[INFO] [stderr]    Compiling bio v0.26.1
[INFO] [stderr]    Compiling strum v0.13.0
[INFO] [stderr]    Compiling bytecount v0.3.2
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling bv v0.10.0
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling itertools-num v0.1.3
[INFO] [stderr]    Compiling snap v0.2.5
[INFO] [stderr]    Compiling statrs v0.9.0
[INFO] [stderr]    Compiling derive-new v0.5.8
[INFO] [stderr]    Compiling ndarray v0.12.1
[INFO] [stderr]    Compiling strum_macros v0.13.0
[INFO] [stderr]    Compiling env_logger v0.6.2
[INFO] [stderr]    Compiling bstr v0.2.8
[INFO] [stderr]    Compiling vec_map v0.8.1
[INFO] [stderr]    Compiling multimap v0.4.0
[INFO] [stderr]    Compiling bio-types v0.5.1
[INFO] [stderr]    Compiling bincode v1.1.4
[INFO] [stderr]    Compiling clap v2.33.0
[INFO] [stderr]    Compiling csv v1.1.1
[INFO] [stderr]    Compiling smafa v0.5.0 (/opt/rustwide/workdir)
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/fragment_clusterer.rs:13:47
[INFO] [stderr]    |
[INFO] [stderr] 13 | ...                   print_stream: &mut std::io::Write){
[INFO] [stderr]    |                                          ^^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Write`
[INFO] [stderr]    |
[INFO] [stderr]    = note: `#[warn(bare_trait_objects)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/lib.rs:168:33
[INFO] [stderr]     |
[INFO] [stderr] 168 |              print_stream: &mut std::io::Write, k: usize,
[INFO] [stderr]     |                                 ^^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Write`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/lib.rs:306:24
[INFO] [stderr]     |
[INFO] [stderr] 306 |     print_stream: &mut std::io::Write,
[INFO] [stderr]     |                        ^^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Write`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/lib.rs:447:24
[INFO] [stderr]     |
[INFO] [stderr] 447 |     print_stream: &mut std::io::Write) {
[INFO] [stderr]     |                        ^^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Write`
[INFO] [stderr] 
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 18.18s
[INFO] running `"docker" "inspect" "fd1f6f85bf54ae8e0466325f0f961b38e751ff677ac3910e8031f90d27cd01e2"`
[INFO] running `"docker" "rm" "-f" "fd1f6f85bf54ae8e0466325f0f961b38e751ff677ac3910e8031f90d27cd01e2"`
[INFO] [stdout] fd1f6f85bf54ae8e0466325f0f961b38e751ff677ac3910e8031f90d27cd01e2
[INFO] running `"docker" "create" "-v" "/big/crater/work/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/big/crater/work/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/big/crater/work/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/big/crater/work/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2019-09-28" "test" "--frozen" "--no-run"`
[INFO] [stdout] 8dd43b8b1c9df983b40b9e7784801098ac6835754f79fe5c5fe443031ce4c9c2
[INFO] running `"docker" "start" "-a" "8dd43b8b1c9df983b40b9e7784801098ac6835754f79fe5c5fe443031ce4c9c2"`
[INFO] [stderr]    Compiling winapi v0.3.8
[INFO] [stderr]    Compiling environment v0.1.1
[INFO] [stderr]    Compiling winconsole v0.10.0
[INFO] [stderr]    Compiling colored v1.8.0
[INFO] [stderr]    Compiling assert_cli v0.6.3
[INFO] [stderr]    Compiling smafa v0.5.0 (/opt/rustwide/workdir)
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/fragment_clusterer.rs:13:47
[INFO] [stderr]    |
[INFO] [stderr] 13 | ...                   print_stream: &mut std::io::Write){
[INFO] [stderr]    |                                          ^^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Write`
[INFO] [stderr]    |
[INFO] [stderr]    = note: `#[warn(bare_trait_objects)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/lib.rs:168:33
[INFO] [stderr]     |
[INFO] [stderr] 168 |              print_stream: &mut std::io::Write, k: usize,
[INFO] [stderr]     |                                 ^^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Write`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/lib.rs:306:24
[INFO] [stderr]     |
[INFO] [stderr] 306 |     print_stream: &mut std::io::Write,
[INFO] [stderr]     |                        ^^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Write`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/lib.rs:447:24
[INFO] [stderr]     |
[INFO] [stderr] 447 |     print_stream: &mut std::io::Write) {
[INFO] [stderr]     |                        ^^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Write`
[INFO] [stderr] 
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 7.74s
[INFO] running `"docker" "inspect" "8dd43b8b1c9df983b40b9e7784801098ac6835754f79fe5c5fe443031ce4c9c2"`
[INFO] running `"docker" "rm" "-f" "8dd43b8b1c9df983b40b9e7784801098ac6835754f79fe5c5fe443031ce4c9c2"`
[INFO] [stdout] 8dd43b8b1c9df983b40b9e7784801098ac6835754f79fe5c5fe443031ce4c9c2
[INFO] running `"docker" "create" "-v" "/big/crater/work/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/big/crater/work/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/big/crater/work/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/big/crater/work/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2019-09-28" "test" "--frozen"`
[INFO] [stdout] e4e75668b105e244681ca3d684d3c857a324f176cff9d33ecab65d088e83f860
[INFO] running `"docker" "start" "-a" "e4e75668b105e244681ca3d684d3c857a324f176cff9d33ecab65d088e83f860"`
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 0.55s
[INFO] [stderr]      Running /opt/rustwide/target/debug/deps/smafa-12233d5d5a8d5525
[INFO] [stdout] 
[INFO] [stdout] running 8 tests
[INFO] [stdout] test translation::tests::test_hello_world ... ok
[INFO] [stdout] test fragment_clusterer::tests::test_best_hit_changes_bug ... ok
[INFO] [stdout] test fragment_clusterer::tests::test_simple ... ok
[INFO] [stdout] test fragment_clusterer::tests::test_bug1 ... ok
[INFO] [stdout] test tests::test_cluster_all_singletons ... ok
[INFO] [stdout] test tests::test_cluster_hello_world ... ok
[INFO] [stdout] test tests::makedb_and_query100seqs ... ok
[INFO] [stdout] test tests::test_cluster_many_seqs ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 8 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
[INFO] [stdout] 
[INFO] [stderr]      Running /opt/rustwide/target/debug/deps/smafa-28f786b5f780c0de
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
[INFO] [stdout] 
[INFO] [stderr]      Running /opt/rustwide/target/debug/deps/test_cmdline-4647cf5ae8c2d871
[INFO] [stdout] 
[INFO] [stdout] running 5 tests
[INFO] [stdout] test tests::test_cluster_amino_acids ... ok
[INFO] [stdout] test tests::test_translated_makedb_and_query_shorter ... ok
[INFO] [stdout] test tests::test_protein_makedb_and_query ... ok
[INFO] [stdout] test tests::test_protein_makedb_and_query_shorter ... ok
[INFO] [stdout] test tests::test_db_version_incompatibility ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 5 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests smafa
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
[INFO] [stdout] 
[INFO] running `"docker" "inspect" "e4e75668b105e244681ca3d684d3c857a324f176cff9d33ecab65d088e83f860"`
[INFO] running `"docker" "rm" "-f" "e4e75668b105e244681ca3d684d3c857a324f176cff9d33ecab65d088e83f860"`
[INFO] [stdout] e4e75668b105e244681ca3d684d3c857a324f176cff9d33ecab65d088e83f860