[INFO] crate ncbitaxonomy 0.1.5 is already in cache [INFO] testing ncbitaxonomy-0.1.5 against beta-2019-09-28 for beta-1.39-1 [INFO] extracting crate ncbitaxonomy 0.1.5 into work/builds/worker-4/source [INFO] validating manifest of crates.io crate ncbitaxonomy 0.1.5 on toolchain beta-2019-09-28 [INFO] running `"/big/crater/work/cargo-home/bin/cargo" "+beta-2019-09-28" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] started tweaking crates.io crate ncbitaxonomy 0.1.5 [INFO] finished tweaking crates.io crate ncbitaxonomy 0.1.5 [INFO] tweaked toml for crates.io crate ncbitaxonomy 0.1.5 written to work/builds/worker-4/source/Cargo.toml [INFO] running `"/big/crater/work/cargo-home/bin/cargo" "+beta-2019-09-28" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update"` [INFO] running `"/big/crater/work/cargo-home/bin/cargo" "+beta-2019-09-28" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] running `"docker" "create" "-v" "/big/crater/work/builds/worker-4/target:/opt/rustwide/target:rw,Z" "-v" "/big/crater/work/builds/worker-4/source:/opt/rustwide/workdir:ro,Z" "-v" "/big/crater/work/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/big/crater/work/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2019-09-28" "build" "--frozen"` [INFO] [stdout] f7babfabccb05be6796466b6f4ac5a62d8ef769a2974fcd37586b928991aca3c [INFO] running `"docker" "start" "-a" "f7babfabccb05be6796466b6f4ac5a62d8ef769a2974fcd37586b928991aca3c"` [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Compiling bio v0.25.0 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling itertools-num v0.1.3 [INFO] [stderr] Compiling statrs v0.9.0 [INFO] [stderr] Compiling ndarray v0.12.1 [INFO] [stderr] Compiling vec_map v0.8.1 [INFO] [stderr] Compiling bio-types v0.5.1 [INFO] [stderr] Compiling indextree v3.0.0 [INFO] [stderr] Compiling bv v0.10.0 [INFO] [stderr] Compiling clap v2.32.0 [INFO] [stderr] Compiling ncbitaxonomy v0.1.5 (/opt/rustwide/workdir) [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/lib.rs:107:17 [INFO] [stderr] | [INFO] [stderr] 107 | let mut fields = line.split("\t|\t").collect::>(); [INFO] [stderr] | ----^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_mut)]` on by default [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/bin/taxonomy_filter_refseq.rs:74:127 [INFO] [stderr] | [INFO] [stderr] 74 | Some(name) => Box::new(File::create(name).unwrap_or_else(|_| panic!("Failed to open output file ({})", name))) as Box, [INFO] [stderr] | ^^^^^^^^^ help: use `dyn`: `dyn io::Write` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/bin/taxonomy_filter_refseq.rs:75:47 [INFO] [stderr] | [INFO] [stderr] 75 | None => Box::new(io::stdout()) as Box, [INFO] [stderr] | ^^^^^^^^^ help: use `dyn`: `dyn io::Write` [INFO] [stderr] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 16.79s [INFO] running `"docker" "inspect" "f7babfabccb05be6796466b6f4ac5a62d8ef769a2974fcd37586b928991aca3c"` [INFO] running `"docker" "rm" "-f" "f7babfabccb05be6796466b6f4ac5a62d8ef769a2974fcd37586b928991aca3c"` [INFO] [stdout] f7babfabccb05be6796466b6f4ac5a62d8ef769a2974fcd37586b928991aca3c [INFO] running `"docker" "create" "-v" "/big/crater/work/builds/worker-4/target:/opt/rustwide/target:rw,Z" "-v" "/big/crater/work/builds/worker-4/source:/opt/rustwide/workdir:ro,Z" "-v" "/big/crater/work/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/big/crater/work/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2019-09-28" "test" "--frozen" "--no-run"` [INFO] [stdout] e979bcaf633d767b44a644e28a9443160a26577fa885b2fc30ae67f01b94401b [INFO] running `"docker" "start" "-a" "e979bcaf633d767b44a644e28a9443160a26577fa885b2fc30ae67f01b94401b"` [INFO] [stderr] Compiling ncbitaxonomy v0.1.5 (/opt/rustwide/workdir) [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/lib.rs:107:17 [INFO] [stderr] | [INFO] [stderr] 107 | let mut fields = line.split("\t|\t").collect::>(); [INFO] [stderr] | ----^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_mut)]` on by default [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/bin/taxonomy_filter_refseq.rs:74:127 [INFO] [stderr] | [INFO] [stderr] 74 | Some(name) => Box::new(File::create(name).unwrap_or_else(|_| panic!("Failed to open output file ({})", name))) as Box, [INFO] [stderr] | ^^^^^^^^^ help: use `dyn`: `dyn io::Write` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/bin/taxonomy_filter_refseq.rs:75:47 [INFO] [stderr] | [INFO] [stderr] 75 | None => Box::new(io::stdout()) as Box, [INFO] [stderr] | ^^^^^^^^^ help: use `dyn`: `dyn io::Write` [INFO] [stderr] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 1.32s [INFO] running `"docker" "inspect" "e979bcaf633d767b44a644e28a9443160a26577fa885b2fc30ae67f01b94401b"` [INFO] running `"docker" "rm" "-f" "e979bcaf633d767b44a644e28a9443160a26577fa885b2fc30ae67f01b94401b"` [INFO] [stdout] e979bcaf633d767b44a644e28a9443160a26577fa885b2fc30ae67f01b94401b [INFO] running `"docker" "create" "-v" "/big/crater/work/builds/worker-4/target:/opt/rustwide/target:rw,Z" "-v" "/big/crater/work/builds/worker-4/source:/opt/rustwide/workdir:ro,Z" "-v" "/big/crater/work/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/big/crater/work/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2019-09-28" "test" "--frozen"` [INFO] [stdout] 6c1c1c4b1e77b42c67a9602833de71f8f0985c57b8398e826d4c3a79bc1f7a1f [INFO] running `"docker" "start" "-a" "6c1c1c4b1e77b42c67a9602833de71f8f0985c57b8398e826d4c3a79bc1f7a1f"` [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 0.04s [INFO] [stderr] Running /opt/rustwide/target/debug/deps/ncbitaxonomy-ef56063a2f1287c7 [INFO] [stdout] [INFO] [stdout] running 7 tests [INFO] [stdout] test tests::descendants ... ok [INFO] [stdout] test tests::contains_name ... ok [INFO] [stdout] test tests::contains_id ... ok [INFO] [stdout] test tests::get_name_by_id ... ok [INFO] [stdout] test tests::traversal ... ok [INFO] [stdout] test tests::get_node_by_id ... ok [INFO] [stdout] test tests::get_id_by_node ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 7 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] [stderr] Running /opt/rustwide/target/debug/deps/taxonomy_filter_refseq-7a4561bdae2f5ee8 [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] [stderr] Doc-tests ncbitaxonomy [INFO] [stdout] [INFO] [stdout] running 1 test [INFO] [stdout] test src/lib.rs - NcbiTaxonomy::from_ncbi_files (line 49) ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 1 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] running `"docker" "inspect" "6c1c1c4b1e77b42c67a9602833de71f8f0985c57b8398e826d4c3a79bc1f7a1f"` [INFO] running `"docker" "rm" "-f" "6c1c1c4b1e77b42c67a9602833de71f8f0985c57b8398e826d4c3a79bc1f7a1f"` [INFO] [stdout] 6c1c1c4b1e77b42c67a9602833de71f8f0985c57b8398e826d4c3a79bc1f7a1f