[INFO] crate gb-io 0.5.0 is already in cache [INFO] testing gb-io-0.5.0 against beta-2019-09-28 for beta-1.39-1 [INFO] extracting crate gb-io 0.5.0 into work/builds/worker-2/source [INFO] validating manifest of crates.io crate gb-io 0.5.0 on toolchain beta-2019-09-28 [INFO] running `"/big/crater/work/cargo-home/bin/cargo" "+beta-2019-09-28" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] started tweaking crates.io crate gb-io 0.5.0 [INFO] finished tweaking crates.io crate gb-io 0.5.0 [INFO] tweaked toml for crates.io crate gb-io 0.5.0 written to work/builds/worker-2/source/Cargo.toml [INFO] running `"/big/crater/work/cargo-home/bin/cargo" "+beta-2019-09-28" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update"` [INFO] running `"/big/crater/work/cargo-home/bin/cargo" "+beta-2019-09-28" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] running `"docker" "create" "-v" "/big/crater/work/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/big/crater/work/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/big/crater/work/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/big/crater/work/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2019-09-28" "build" "--frozen"` [INFO] [stdout] 2549beadc9ab386f4231ecc0336b6940c4c8563dddb88668f5e035e15d79e3b6 [INFO] running `"docker" "start" "-a" "2549beadc9ab386f4231ecc0336b6940c4c8563dddb88668f5e035e15d79e3b6"` [INFO] [stderr] Compiling syn v1.0.5 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Compiling bio v0.25.0 [INFO] [stderr] Compiling bytecount v0.3.2 [INFO] [stderr] Compiling circular v0.2.0 [INFO] [stderr] Compiling err-derive v0.1.6 [INFO] [stderr] Compiling itertools-num v0.1.3 [INFO] [stderr] Compiling nom v4.2.3 [INFO] [stderr] Compiling statrs v0.9.0 [INFO] [stderr] Compiling ndarray v0.12.1 [INFO] [stderr] Compiling gb-io v0.5.0 (/opt/rustwide/workdir) [INFO] [stderr] Compiling bv v0.10.0 [INFO] [stderr] Compiling proc-macro-error v0.2.6 [INFO] [stderr] Compiling synstructure v0.12.1 [INFO] [stderr] Compiling serde_derive v1.0.101 [INFO] [stderr] Compiling serde v1.0.101 [INFO] [stderr] Compiling bstr v0.2.8 [INFO] [stderr] Compiling bio-types v0.5.1 [INFO] [stderr] Compiling multimap v0.4.0 [INFO] [stderr] Compiling vec_map v0.8.1 [INFO] [stderr] Compiling string_cache v0.7.4 [INFO] [stderr] Compiling csv v1.1.1 [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/seq.rs:141:28 [INFO] [stderr] | [INFO] [stderr] 141 | External(Location, Box), [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/seq.rs:743:42 [INFO] [stderr] | [INFO] [stderr] 743 | F: (FnMut(&str) -> Result>) + 'a, [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/seq.rs:755:42 [INFO] [stderr] | [INFO] [stderr] 755 | F: (FnMut(&str) -> Result>) + 'a, [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/reader/nom_parsers.rs:841:35 [INFO] [stderr] | [INFO] [stderr] 841 | pub type NomParser = &'static (Fn(&[u8]) -> IResult<&[u8], T> + 'static); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: use `dyn`: `dyn Fn(&[u8]) -> IResult<&[u8], T> + 'static` [INFO] [stderr] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 31.72s [INFO] running `"docker" "inspect" "2549beadc9ab386f4231ecc0336b6940c4c8563dddb88668f5e035e15d79e3b6"` [INFO] running `"docker" "rm" "-f" "2549beadc9ab386f4231ecc0336b6940c4c8563dddb88668f5e035e15d79e3b6"` [INFO] [stdout] 2549beadc9ab386f4231ecc0336b6940c4c8563dddb88668f5e035e15d79e3b6 [INFO] running `"docker" "create" "-v" "/big/crater/work/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/big/crater/work/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/big/crater/work/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/big/crater/work/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2019-09-28" "test" "--frozen" "--no-run"` [INFO] [stdout] e252adbfaf3f0ba921bca7239cb27c9a528ec361ffb0208ded6bfa80c7cdeb9e [INFO] running `"docker" "start" "-a" "e252adbfaf3f0ba921bca7239cb27c9a528ec361ffb0208ded6bfa80c7cdeb9e"` [INFO] [stderr] Compiling env_logger v0.6.2 [INFO] [stderr] Compiling gb-io v0.5.0 (/opt/rustwide/workdir) [INFO] [stderr] error: couldn't read src/../tests/mg1655.gb: No such file or directory (os error 2) [INFO] [stderr] --> src/lib.rs:72:21 [INFO] [stderr] | [INFO] [stderr] 72 | let ecoli = include_bytes!("../tests/mg1655.gb"); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] error: couldn't read src/../tests/circ.gb: No such file or directory (os error 2) [INFO] [stderr] --> src/lib.rs:88:32 [INFO] [stderr] | [INFO] [stderr] 88 | let circ = parse_slice(include_bytes!("../tests/circ.gb")).unwrap(); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] error: couldn't read src/../tests/circ.gb: No such file or directory (os error 2) [INFO] [stderr] --> src/lib.rs:95:32 [INFO] [stderr] | [INFO] [stderr] 95 | let circ = parse_slice(include_bytes!("../tests/circ.gb")).unwrap().pop().unwrap(); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] error: couldn't read src/../tests/biopython_tests/ls_orchid.gb: No such file or directory (os error 2) [INFO] [stderr] --> src/lib.rs:114:25 [INFO] [stderr] | [INFO] [stderr] 114 | parse_slice(include_bytes!("../tests/biopython_tests/ls_orchid.gb")).unwrap(); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/seq.rs:141:28 [INFO] [stderr] | [INFO] [stderr] 141 | External(Location, Box), [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/seq.rs:743:42 [INFO] [stderr] | [INFO] [stderr] 743 | F: (FnMut(&str) -> Result>) + 'a, [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/seq.rs:755:42 [INFO] [stderr] | [INFO] [stderr] 755 | F: (FnMut(&str) -> Result>) + 'a, [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/reader/nom_parsers.rs:841:35 [INFO] [stderr] | [INFO] [stderr] 841 | pub type NomParser = &'static (Fn(&[u8]) -> IResult<&[u8], T> + 'static); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: use `dyn`: `dyn Fn(&[u8]) -> IResult<&[u8], T> + 'static` [INFO] [stderr] [INFO] [stderr] error: aborting due to 4 previous errors [INFO] [stderr] [INFO] [stderr] error: could not compile `gb-io`. [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `"docker" "inspect" "e252adbfaf3f0ba921bca7239cb27c9a528ec361ffb0208ded6bfa80c7cdeb9e"` [INFO] running `"docker" "rm" "-f" "e252adbfaf3f0ba921bca7239cb27c9a528ec361ffb0208ded6bfa80c7cdeb9e"` [INFO] [stdout] e252adbfaf3f0ba921bca7239cb27c9a528ec361ffb0208ded6bfa80c7cdeb9e