[INFO] crate coverm 0.2.0-alpha7 is already in cache [INFO] testing coverm-0.2.0-alpha7 against beta-2019-09-28 for beta-1.39-1 [INFO] extracting crate coverm 0.2.0-alpha7 into work/builds/worker-5/source [INFO] validating manifest of crates.io crate coverm 0.2.0-alpha7 on toolchain beta-2019-09-28 [INFO] running `"/big/crater/work/cargo-home/bin/cargo" "+beta-2019-09-28" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] started tweaking crates.io crate coverm 0.2.0-alpha7 [INFO] finished tweaking crates.io crate coverm 0.2.0-alpha7 [INFO] tweaked toml for crates.io crate coverm 0.2.0-alpha7 written to work/builds/worker-5/source/Cargo.toml [INFO] running `"/big/crater/work/cargo-home/bin/cargo" "+beta-2019-09-28" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update"` [INFO] running `"/big/crater/work/cargo-home/bin/cargo" "+beta-2019-09-28" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] running `"docker" "create" "-v" "/big/crater/work/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/big/crater/work/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/big/crater/work/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/big/crater/work/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2019-09-28" "build" "--frozen"` [INFO] [stdout] 2ee8ededeef494e165b5496eba61f3fb0b628d31b00ba692dd93607bb6a28492 [INFO] running `"docker" "start" "-a" "2ee8ededeef494e165b5496eba61f3fb0b628d31b00ba692dd93607bb6a28492"` [INFO] [stderr] Compiling bio v0.26.1 [INFO] [stderr] Compiling strum v0.13.0 [INFO] [stderr] Compiling nom v4.2.3 [INFO] [stderr] Compiling statrs v0.9.0 [INFO] [stderr] Compiling strum_macros v0.13.0 [INFO] [stderr] Compiling tempfile v3.0.8 [INFO] [stderr] Compiling bio-types v0.5.1 [INFO] [stderr] Compiling clap v2.33.0 [INFO] [stderr] Compiling cexpr v0.3.5 [INFO] [stderr] Compiling bindgen v0.51.1 [INFO] [stderr] Compiling rust-htslib v0.23.0 [INFO] [stderr] Compiling coverm v0.2.0-alpha7 (/opt/rustwide/workdir) [INFO] [stderr] warning: unnecessary trailing semicolon [INFO] [stderr] --> src/bam_generator.rs:58:22 [INFO] [stderr] | [INFO] [stderr] 58 | fn finish(self) {;} [INFO] [stderr] | ^ help: remove this semicolon [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(redundant_semicolon)]` on by default [INFO] [stderr] [INFO] [stderr] warning: unnecessary trailing semicolon [INFO] [stderr] --> src/bam_generator.rs:322:22 [INFO] [stderr] | [INFO] [stderr] 322 | fn finish(self) {;} [INFO] [stderr] | ^ help: remove this semicolon [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/bam_generator.rs:521:20 [INFO] [stderr] | [INFO] [stderr] 521 | pub index: Box, [INFO] [stderr] | ^^^^^^^^^^^^^^ help: use `dyn`: `dyn BwaIndexStruct` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/coverage_takers.rs:6:31 [INFO] [stderr] | [INFO] [stderr] 6 | print_stream: &'a mut std::io::Write, [INFO] [stderr] | ^^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Write` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/coverage_takers.rs:10:31 [INFO] [stderr] | [INFO] [stderr] 10 | print_stream: &'a mut std::io::Write, [INFO] [stderr] | ^^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Write` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/coverage_takers.rs:46:28 [INFO] [stderr] | [INFO] [stderr] 46 | print_stream: &mut std::io::Write) -> CoverageTakerType { [INFO] [stderr] | ^^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Write` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/coverage_takers.rs:53:28 [INFO] [stderr] | [INFO] [stderr] 53 | print_stream: &mut std::io::Write) -> CoverageTakerType { [INFO] [stderr] | ^^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Write` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/coverage_printer.rs:20:28 [INFO] [stderr] | [INFO] [stderr] 20 | print_stream: &mut std::io::Write, [INFO] [stderr] | ^^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Write` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/coverage_printer.rs:97:28 [INFO] [stderr] | [INFO] [stderr] 97 | print_stream: &mut std::io::Write) { [INFO] [stderr] | ^^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Write` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/coverage_printer.rs:126:24 [INFO] [stderr] | [INFO] [stderr] 126 | print_stream: &mut std::io::Write, [INFO] [stderr] | ^^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Write` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/coverage_printer.rs:253:24 [INFO] [stderr] | [INFO] [stderr] 253 | print_stream: &mut std::io::Write, [INFO] [stderr] | ^^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Write` [INFO] [stderr] [INFO] [stderr] warning: unused variable: `stoit_name` [INFO] [stderr] --> src/shard_bam_reader.rs:540:9 [INFO] [stderr] | [INFO] [stderr] 540 | let stoit_name = match include_reference_in_stoit_name { [INFO] [stderr] | ^^^^^^^^^^ help: consider prefixing with an underscore: `_stoit_name` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_variables)]` on by default [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/contig.rs:71:36 [INFO] [stderr] | [INFO] [stderr] 71 | for (coverage, mut estimator) in coverages.iter().zip(coverage_estimators.iter_mut()) { [INFO] [stderr] | ----^^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_mut)]` on by default [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/contig.rs:23:9 [INFO] [stderr] | [INFO] [stderr] 23 | for mut bam_generator in bam_readers { [INFO] [stderr] | ----^^^^^^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/genome.rs:27:9 [INFO] [stderr] | [INFO] [stderr] 27 | for mut bam_generator in bam_readers { [INFO] [stderr] | ----^^^^^^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/genome.rs:351:9 [INFO] [stderr] | [INFO] [stderr] 351 | for mut bam_generator in bam_readers { [INFO] [stderr] | ----^^^^^^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/coverage_takers.rs:324:33 [INFO] [stderr] | [INFO] [stderr] 324 | ... let mut struct_to_return; [INFO] [stderr] | ----^^^^^^^^^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/coverage_printer.rs:282:17 [INFO] [stderr] | [INFO] [stderr] 282 | let mut coverage_multipliers: Vec = [INFO] [stderr] | ----^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/main.rs:916:28 [INFO] [stderr] | [INFO] [stderr] 916 | print_stream: &mut std::io::Write) -> Self { [INFO] [stderr] | ^^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Write` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:330:17 [INFO] [stderr] | [INFO] [stderr] 330 | let mut genome_names_content: Vec; [INFO] [stderr] | ----^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_mut)]` on by default [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:343:25 [INFO] [stderr] | [INFO] [stderr] 343 | let mut genome_fasta_files: Vec = parse_list_of_genome_fasta_files(m); [INFO] [stderr] | ----^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:586:21 [INFO] [stderr] | [INFO] [stderr] 586 | let mut reader = bam::Reader::from_path(bam).expect( [INFO] [stderr] | ----^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:630:25 [INFO] [stderr] | [INFO] [stderr] 630 | let mut bam_readers = coverm::bam_generator::generate_filtered_bam_readers_from_bam_files( [INFO] [stderr] | ----^^^^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:647:25 [INFO] [stderr] | [INFO] [stderr] 647 | let mut bam_readers = coverm::shard_bam_reader::generate_sharded_bam_reader_from_bam_files( [INFO] [stderr] | ----^^^^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:655:25 [INFO] [stderr] | [INFO] [stderr] 655 | let mut bam_readers = coverm::bam_generator::generate_named_bam_readers_from_bam_files( [INFO] [stderr] | ----^^^^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 51.06s [INFO] running `"docker" "inspect" "2ee8ededeef494e165b5496eba61f3fb0b628d31b00ba692dd93607bb6a28492"` [INFO] running `"docker" "rm" "-f" "2ee8ededeef494e165b5496eba61f3fb0b628d31b00ba692dd93607bb6a28492"` [INFO] [stdout] 2ee8ededeef494e165b5496eba61f3fb0b628d31b00ba692dd93607bb6a28492 [INFO] running `"docker" "create" "-v" "/big/crater/work/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/big/crater/work/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/big/crater/work/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/big/crater/work/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2019-09-28" "test" "--frozen" "--no-run"` [INFO] [stdout] 739c4deaf222336265231dda4f78cefde2628aab6f6fe1fdfbf04ebf992d413d [INFO] running `"docker" "start" "-a" "739c4deaf222336265231dda4f78cefde2628aab6f6fe1fdfbf04ebf992d413d"` [INFO] [stderr] Compiling winapi v0.3.8 [INFO] [stderr] Compiling winconsole v0.10.0 [INFO] [stderr] Compiling colored v1.8.0 [INFO] [stderr] Compiling assert_cli v0.6.3 [INFO] [stderr] Compiling coverm v0.2.0-alpha7 (/opt/rustwide/workdir) [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/main.rs:916:28 [INFO] [stderr] | [INFO] [stderr] 916 | print_stream: &mut std::io::Write) -> Self { [INFO] [stderr] | ^^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Write` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stderr] [INFO] [stderr] warning: unnecessary trailing semicolon [INFO] [stderr] --> src/bam_generator.rs:58:22 [INFO] [stderr] | [INFO] [stderr] 58 | fn finish(self) {;} [INFO] [stderr] | ^ help: remove this semicolon [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(redundant_semicolon)]` on by default [INFO] [stderr] [INFO] [stderr] warning: unnecessary trailing semicolon [INFO] [stderr] --> src/bam_generator.rs:322:22 [INFO] [stderr] | [INFO] [stderr] 322 | fn finish(self) {;} [INFO] [stderr] | ^ help: remove this semicolon [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/bam_generator.rs:521:20 [INFO] [stderr] | [INFO] [stderr] 521 | pub index: Box, [INFO] [stderr] | ^^^^^^^^^^^^^^ help: use `dyn`: `dyn BwaIndexStruct` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/coverage_takers.rs:6:31 [INFO] [stderr] | [INFO] [stderr] 6 | print_stream: &'a mut std::io::Write, [INFO] [stderr] | ^^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Write` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/coverage_takers.rs:10:31 [INFO] [stderr] | [INFO] [stderr] 10 | print_stream: &'a mut std::io::Write, [INFO] [stderr] | ^^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Write` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/coverage_takers.rs:46:28 [INFO] [stderr] | [INFO] [stderr] 46 | print_stream: &mut std::io::Write) -> CoverageTakerType { [INFO] [stderr] | ^^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Write` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/coverage_takers.rs:53:28 [INFO] [stderr] | [INFO] [stderr] 53 | print_stream: &mut std::io::Write) -> CoverageTakerType { [INFO] [stderr] | ^^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Write` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/coverage_printer.rs:20:28 [INFO] [stderr] | [INFO] [stderr] 20 | print_stream: &mut std::io::Write, [INFO] [stderr] | ^^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Write` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/coverage_printer.rs:97:28 [INFO] [stderr] | [INFO] [stderr] 97 | print_stream: &mut std::io::Write) { [INFO] [stderr] | ^^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Write` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/coverage_printer.rs:126:24 [INFO] [stderr] | [INFO] [stderr] 126 | print_stream: &mut std::io::Write, [INFO] [stderr] | ^^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Write` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/coverage_printer.rs:253:24 [INFO] [stderr] | [INFO] [stderr] 253 | print_stream: &mut std::io::Write, [INFO] [stderr] | ^^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Write` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:330:17 [INFO] [stderr] | [INFO] [stderr] 330 | let mut genome_names_content: Vec; [INFO] [stderr] | ----^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_mut)]` on by default [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:343:25 [INFO] [stderr] | [INFO] [stderr] 343 | let mut genome_fasta_files: Vec = parse_list_of_genome_fasta_files(m); [INFO] [stderr] | ----^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:586:21 [INFO] [stderr] | [INFO] [stderr] 586 | let mut reader = bam::Reader::from_path(bam).expect( [INFO] [stderr] | ----^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:630:25 [INFO] [stderr] | [INFO] [stderr] 630 | let mut bam_readers = coverm::bam_generator::generate_filtered_bam_readers_from_bam_files( [INFO] [stderr] | ----^^^^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:647:25 [INFO] [stderr] | [INFO] [stderr] 647 | let mut bam_readers = coverm::shard_bam_reader::generate_sharded_bam_reader_from_bam_files( [INFO] [stderr] | ----^^^^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:655:25 [INFO] [stderr] | [INFO] [stderr] 655 | let mut bam_readers = coverm::bam_generator::generate_named_bam_readers_from_bam_files( [INFO] [stderr] | ----^^^^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: unused variable: `stoit_name` [INFO] [stderr] --> src/shard_bam_reader.rs:540:9 [INFO] [stderr] | [INFO] [stderr] 540 | let stoit_name = match include_reference_in_stoit_name { [INFO] [stderr] | ^^^^^^^^^^ help: consider prefixing with an underscore: `_stoit_name` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_variables)]` on by default [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/contig.rs:71:36 [INFO] [stderr] | [INFO] [stderr] 71 | for (coverage, mut estimator) in coverages.iter().zip(coverage_estimators.iter_mut()) { [INFO] [stderr] | ----^^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_mut)]` on by default [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/contig.rs:23:9 [INFO] [stderr] | [INFO] [stderr] 23 | for mut bam_generator in bam_readers { [INFO] [stderr] | ----^^^^^^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/genome.rs:27:9 [INFO] [stderr] | [INFO] [stderr] 27 | for mut bam_generator in bam_readers { [INFO] [stderr] | ----^^^^^^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/genome.rs:351:9 [INFO] [stderr] | [INFO] [stderr] 351 | for mut bam_generator in bam_readers { [INFO] [stderr] | ----^^^^^^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/coverage_takers.rs:324:33 [INFO] [stderr] | [INFO] [stderr] 324 | ... let mut struct_to_return; [INFO] [stderr] | ----^^^^^^^^^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/coverage_printer.rs:282:17 [INFO] [stderr] | [INFO] [stderr] 282 | let mut coverage_multipliers: Vec = [INFO] [stderr] | ----^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 9.41s [INFO] running `"docker" "inspect" "739c4deaf222336265231dda4f78cefde2628aab6f6fe1fdfbf04ebf992d413d"` [INFO] running `"docker" "rm" "-f" "739c4deaf222336265231dda4f78cefde2628aab6f6fe1fdfbf04ebf992d413d"` [INFO] [stdout] 739c4deaf222336265231dda4f78cefde2628aab6f6fe1fdfbf04ebf992d413d [INFO] running `"docker" "create" "-v" "/big/crater/work/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/big/crater/work/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/big/crater/work/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/big/crater/work/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2019-09-28" "test" "--frozen"` [INFO] [stdout] c2aba5623ebe44afc4db958ce4154fdd77d6236443ccf52e430ba776ed024514 [INFO] running `"docker" "start" "-a" "c2aba5623ebe44afc4db958ce4154fdd77d6236443ccf52e430ba776ed024514"` [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 0.71s [INFO] [stderr] Running /opt/rustwide/target/debug/deps/coverm-19991237b0fff335 [INFO] [stdout] [INFO] [stdout] running 76 tests [INFO] [stdout] test contig::tests::test_contig_end_exclusion ... FAILED [INFO] [stdout] test contig::tests::test_one_contig_variance ... FAILED [INFO] [stdout] test contig::tests::test_reads_per_base_estimator ... FAILED [INFO] [stdout] test contig::tests::test_multiple_outputs_one_zero_no_print_zeroes ... FAILED [INFO] [stdout] test contig::tests::test_reads_not_counting_when_sufficient_min_covered ... FAILED [INFO] [stdout] test contig::tests::test_streaming_bam_file ... FAILED [INFO] [stdout] test contig::tests::test_proper_pairs_only ... FAILED [INFO] [stdout] test contig::tests::test_multiple_coverage_methods ... FAILED [INFO] [stdout] test contig::tests::test_one_genome_two_contigs_first_covered_no_zeros ... FAILED [INFO] [stdout] test contig::tests::test_reads_not_counting_when_insufficient_min_covered ... FAILED [INFO] [stdout] test contig::tests::test_multiple_outputs_one_zero_no_print_zeroes_reverse_order ... FAILED [INFO] [stdout] test contig::tests::test_trimmed_mean_bug ... FAILED [INFO] [stdout] test contig::tests::test_sharded_bams_some_not_covered ... FAILED [INFO] [stdout] test contig::tests::test_one_read_of_pair_mapped ... FAILED [INFO] [stdout] test contig::tests::test_one_genome_two_contigs_first_covered ... FAILED [INFO] [stdout] test contig::tests::test_variance_estimator_all_bases_covered ... FAILED [INFO] [stdout] test filter::tests::test_first_encountered_read_having_negative_insert_length ... FAILED [INFO] [stdout] test filter::tests::test_filter_single_and_paired_reads ... FAILED [INFO] [stdout] test filter::tests::test_filter_single_and_paired_reads_inverse ... FAILED [INFO] [stdout] test coverage_takers::tests::test_cached_hello_world ... ok [INFO] [stdout] test coverage_printer::tests::test_dense_cached_printer_hello_world ... ok [INFO] [stdout] test coverage_printer::tests::test_metabat_mode_printer_easy ... ok [INFO] [stdout] test coverage_takers::tests::test_cached_next_one_coverage ... ok [INFO] [stdout] test filter::tests::test_filter_single_reads ... FAILED [INFO] [stdout] test coverage_takers::tests::test_cached_two_samples_matching ... ok [INFO] [stdout] test coverage_takers::tests::test_cached_two_samples_mismatching ... ok [INFO] [stdout] test filter::tests::test_filter_single_reads_inverse ... FAILED [INFO] [stdout] test coverage_takers::tests::test_cached_next ... ok [INFO] [stdout] test filter::tests::test_hello_world ... FAILED [INFO] [stdout] test filter::tests::test_hello_world_inverse ... FAILED [INFO] [stdout] test coverage_printer::tests::test_dense_cached_printer_easy_normalised ... ok [INFO] [stdout] test filter::tests::test_one_bad_read ... FAILED [INFO] [stdout] test filter::tests::test_one_bad_read_inverse ... FAILED [INFO] [stdout] test genome::tests::test_covered_bases_estimator ... FAILED [INFO] [stdout] test genome::tests::test_covered_bases_estimator_contig_end_exclusion ... FAILED [INFO] [stdout] test genome::tests::test_fill_genome_length_backwards2 ... FAILED [INFO] [stdout] test genome::tests::test_fill_genome_length_backwards1 ... FAILED [INFO] [stdout] test genome::tests::test_fill_genome_length_backwards3 ... FAILED [INFO] [stdout] test genome::tests::test_multiple_outputs_one_zero_no_print_zeroes_separator ... FAILED [INFO] [stdout] test genome::tests::test_multiple_outputs_one_zero_no_print_zeroes_single_genome ... FAILED [INFO] [stdout] test genome::tests::test_julian_error ... FAILED [INFO] [stdout] test genome::tests::test_one_genome_two_contigs_both_covered ... FAILED [INFO] [stdout] test genome::tests::test_one_genome_two_contigs_first_covered ... FAILED [INFO] [stdout] test genome::tests::test_multiple_outputs_one_zero_no_print_zeroes_separator_reverse ... FAILED [INFO] [stdout] test genome::tests::test_multiple_outputs_one_zero_no_print_zeroes_single_genome_reverse ... FAILED [INFO] [stdout] test genome::tests::test_one_genome_min_fraction_covered_just_ok ... FAILED [INFO] [stdout] test genome::tests::test_one_genome_min_fraction_covered_under_min ... FAILED [INFO] [stdout] test genome::tests::test_genomes_and_contigs_reads_mapped ... FAILED [INFO] [stdout] test genome::tests::test_one_genome_min_fraction_covered_under_min_contig_names ... FAILED [INFO] [stdout] test genome::tests::test_one_genome_two_contigs_second_covered ... FAILED [INFO] [stdout] test genome::tests::test_one_genome_two_contigs_first_covered_contig_names ... FAILED [INFO] [stdout] test genome::tests::test_one_genome_two_contigs_second_covered_contig_names ... FAILED [INFO] [stdout] test genome::tests::test_one_genome_min_fraction_covered_just_ok_contig_names ... FAILED [INFO] [stdout] test genome::tests::test_one_genome_two_contigs_both_covered_contig_names ... FAILED [INFO] [stdout] test genome::tests::test_print_previous_zero_coverage_genomes2 ... FAILED [INFO] [stdout] test genome::tests::test_read_count_calculator ... FAILED [INFO] [stdout] test genome::tests::test_print_previous_zero_coverage_genomes2_length_estimator ... FAILED [INFO] [stdout] test genome::tests::test_two_contigs_trimmed_mean ... FAILED [INFO] [stdout] test genome::tests::test_read_count_below_min_covered ... FAILED [INFO] [stdout] test genome::tests::test_sharded_bams_with_zero_coverage ... FAILED [INFO] [stdout] test genome::tests::test_two_contigs_pileup_counts_estimator_contig_names ... FAILED [INFO] [stdout] test genome::tests::test_single_genome ... FAILED [INFO] [stdout] test genome::tests::test_two_contigs_trimmed_mean_contig_names ... FAILED [INFO] [stdout] test genome::tests::test_zero_coverage_genomes ... FAILED [INFO] [stdout] test genome::tests::test_sharded_bams_with_genome_exclusion ... FAILED [INFO] [stdout] test genome::tests::test_two_contigs_pileup_counts_estimator ... FAILED [INFO] [stdout] test genome::tests::test_read_count_below_min_covered_genomes_and_contigs ... FAILED [INFO] [stdout] test genome_exclusion::tests::test_genomes_and_contigs_exclusion_filter ... ok [INFO] [stdout] test shard_bam_reader::tests::test_shard_hello_world ... FAILED [INFO] [stdout] test genome::tests::test_zero_coverage_genomes_contig_names ... FAILED [INFO] [stdout] test tests::test_contig_to_genome ... ok [INFO] [stdout] test genome_exclusion::tests::test_separator_exclusion_filter ... ok [INFO] [stdout] test tests::test_read_genome_fasta_files_one_genome ... FAILED [INFO] [stdout] test genome::tests::test_zero_coverage_genomes_after_min_fraction ... FAILED [INFO] [stdout] test genome::tests::test_zero_coverage_genomes_contig_names_with_multiple_methods ... FAILED [INFO] [stdout] test contig::tests::test_julian_error ... FAILED [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] [INFO] [stdout] ---- contig::tests::test_contig_end_exclusion stdout ---- [INFO] [stdout] thread 'contig::tests::test_contig_end_exclusion' panicked at 'Unable to find BAM file tests/data/7seqs.reads_for_seq1_and_seq2.bam: InvalidPath', src/libcore/result.rs:1165:5 [INFO] [stdout] note: run with `RUST_BACKTRACE=1` environment variable to display a backtrace. [INFO] [stdout] [INFO] [stdout] ---- contig::tests::test_one_contig_variance stdout ---- [INFO] [stdout] thread 'contig::tests::test_one_contig_variance' panicked at 'Unable to find BAM file tests/data/2seqs.reads_for_seq1.bam: InvalidPath', src/libcore/result.rs:1165:5 [INFO] [stdout] [INFO] [stdout] ---- contig::tests::test_reads_per_base_estimator stdout ---- [INFO] [stdout] thread 'contig::tests::test_reads_per_base_estimator' panicked at 'Cannot continue since mapping failed.', src/bam_generator.rs:146:13 [INFO] [stdout] [INFO] [stdout] ---- contig::tests::test_multiple_outputs_one_zero_no_print_zeroes stdout ---- [INFO] [stdout] thread 'contig::tests::test_multiple_outputs_one_zero_no_print_zeroes' panicked at 'Unable to find BAM file tests/data/2seqs.reads_for_seq1.bam: InvalidPath', src/libcore/result.rs:1165:5 [INFO] [stdout] [INFO] [stdout] ---- contig::tests::test_reads_not_counting_when_sufficient_min_covered stdout ---- [INFO] [stdout] thread 'contig::tests::test_reads_not_counting_when_sufficient_min_covered' panicked at 'Unable to find BAM file tests/data/2seqs.reads_for_seq1_and_seq2.bam: InvalidPath', src/libcore/result.rs:1165:5 [INFO] [stdout] [INFO] [stdout] ---- contig::tests::test_streaming_bam_file stdout ---- [INFO] [stdout] thread 'contig::tests::test_streaming_bam_file' panicked at 'Cannot continue since mapping failed.', src/bam_generator.rs:146:13 [INFO] [stdout] [INFO] [stdout] ---- contig::tests::test_proper_pairs_only stdout ---- [INFO] [stdout] thread 'contig::tests::test_proper_pairs_only' panicked at 'Unable to find BAM file tests/data/1.bam: InvalidPath', src/libcore/result.rs:1165:5 [INFO] [stdout] [INFO] [stdout] ---- contig::tests::test_multiple_coverage_methods stdout ---- [INFO] [stdout] thread 'contig::tests::test_multiple_coverage_methods' panicked at 'Unable to find BAM file tests/data/2seqs.reads_for_seq1.bam: InvalidPath', src/libcore/result.rs:1165:5 [INFO] [stdout] [INFO] [stdout] ---- contig::tests::test_one_genome_two_contigs_first_covered_no_zeros stdout ---- [INFO] [stdout] thread 'contig::tests::test_one_genome_two_contigs_first_covered_no_zeros' panicked at 'Unable to find BAM file tests/data/7seqs.reads_for_seq1_and_seq2.bam: InvalidPath', src/libcore/result.rs:1165:5 [INFO] [stdout] [INFO] [stdout] ---- contig::tests::test_reads_not_counting_when_insufficient_min_covered stdout ---- [INFO] [stdout] thread 'contig::tests::test_reads_not_counting_when_insufficient_min_covered' panicked at 'Unable to find BAM file tests/data/2seqs.reads_for_seq1_and_seq2.bam: InvalidPath', src/libcore/result.rs:1165:5 [INFO] [stdout] [INFO] [stdout] ---- contig::tests::test_multiple_outputs_one_zero_no_print_zeroes_reverse_order stdout ---- [INFO] [stdout] thread 'contig::tests::test_multiple_outputs_one_zero_no_print_zeroes_reverse_order' panicked at 'Unable to find BAM file tests/data/2seqs.reads_for_seq1.bam: InvalidPath', src/libcore/result.rs:1165:5 [INFO] [stdout] [INFO] [stdout] ---- contig::tests::test_trimmed_mean_bug stdout ---- [INFO] [stdout] thread 'contig::tests::test_trimmed_mean_bug' panicked at 'Unable to find BAM file tests/data/2seqs.reads_for_seq1.bam: InvalidPath', src/libcore/result.rs:1165:5 [INFO] [stdout] [INFO] [stdout] ---- contig::tests::test_sharded_bams_some_not_covered stdout ---- [INFO] [stdout] thread 'contig::tests::test_sharded_bams_some_not_covered' panicked at 'Unable to open bam file tests/data/shard1.bam: InvalidPath', src/libcore/result.rs:1165:5 [INFO] [stdout] [INFO] [stdout] ---- contig::tests::test_one_read_of_pair_mapped stdout ---- [INFO] [stdout] thread 'contig::tests::test_one_read_of_pair_mapped' panicked at 'Unable to find BAM file tests/data/1read_of_pair_mapped.bam: InvalidPath', src/libcore/result.rs:1165:5 [INFO] [stdout] [INFO] [stdout] ---- contig::tests::test_one_genome_two_contigs_first_covered stdout ---- [INFO] [stdout] thread 'contig::tests::test_one_genome_two_contigs_first_covered' panicked at 'Unable to find BAM file tests/data/7seqs.reads_for_seq1_and_seq2.bam: InvalidPath', src/libcore/result.rs:1165:5 [INFO] [stdout] [INFO] [stdout] ---- contig::tests::test_variance_estimator_all_bases_covered stdout ---- [INFO] [stdout] thread 'contig::tests::test_variance_estimator_all_bases_covered' panicked at 'Unable to find BAM file tests/data/k141_2005182.bam: InvalidPath', src/libcore/result.rs:1165:5 [INFO] [stdout] [INFO] [stdout] ---- filter::tests::test_first_encountered_read_having_negative_insert_length stdout ---- [INFO] [stdout] thread 'filter::tests::test_first_encountered_read_having_negative_insert_length' panicked at 'called `Result::unwrap()` on an `Err` value: InvalidPath', src/libcore/result.rs:1165:5 [INFO] [stdout] [INFO] [stdout] ---- filter::tests::test_filter_single_and_paired_reads stdout ---- [INFO] [stdout] thread 'filter::tests::test_filter_single_and_paired_reads' panicked at 'called `Result::unwrap()` on an `Err` value: InvalidPath', src/libcore/result.rs:1165:5 [INFO] [stdout] [INFO] [stdout] ---- filter::tests::test_filter_single_and_paired_reads_inverse stdout ---- [INFO] [stdout] thread 'filter::tests::test_filter_single_and_paired_reads_inverse' panicked at 'called `Result::unwrap()` on an `Err` value: InvalidPath', src/libcore/result.rs:1165:5 [INFO] [stdout] [INFO] [stdout] ---- filter::tests::test_filter_single_reads stdout ---- [INFO] [stdout] thread 'filter::tests::test_filter_single_reads' panicked at 'called `Result::unwrap()` on an `Err` value: InvalidPath', src/libcore/result.rs:1165:5 [INFO] [stdout] [INFO] [stdout] ---- filter::tests::test_filter_single_reads_inverse stdout ---- [INFO] [stdout] thread 'filter::tests::test_filter_single_reads_inverse' panicked at 'called `Result::unwrap()` on an `Err` value: InvalidPath', src/libcore/result.rs:1165:5 [INFO] [stdout] [INFO] [stdout] ---- filter::tests::test_hello_world stdout ---- [INFO] [stdout] thread 'filter::tests::test_hello_world' panicked at 'called `Result::unwrap()` on an `Err` value: InvalidPath', src/libcore/result.rs:1165:5 [INFO] [stdout] [INFO] [stdout] ---- filter::tests::test_hello_world_inverse stdout ---- [INFO] [stdout] thread 'filter::tests::test_hello_world_inverse' panicked at 'called `Result::unwrap()` on an `Err` value: InvalidPath', src/libcore/result.rs:1165:5 [INFO] [stdout] [INFO] [stdout] ---- filter::tests::test_one_bad_read stdout ---- [INFO] [stdout] thread 'filter::tests::test_one_bad_read' panicked at 'called `Result::unwrap()` on an `Err` value: InvalidPath', src/libcore/result.rs:1165:5 [INFO] [stdout] [INFO] [stdout] ---- filter::tests::test_one_bad_read_inverse stdout ---- [INFO] [stdout] thread 'filter::tests::test_one_bad_read_inverse' panicked at 'called `Result::unwrap()` on an `Err` value: InvalidPath', src/libcore/result.rs:1165:5 [INFO] [stdout] [INFO] [stdout] ---- genome::tests::test_covered_bases_estimator stdout ---- [INFO] [stdout] thread 'genome::tests::test_covered_bases_estimator' panicked at 'Unable to find BAM file tests/data/7seqs.reads_for_seq1_and_seq2.bam: InvalidPath', src/libcore/result.rs:1165:5 [INFO] [stdout] [INFO] [stdout] ---- genome::tests::test_covered_bases_estimator_contig_end_exclusion stdout ---- [INFO] [stdout] thread 'genome::tests::test_covered_bases_estimator_contig_end_exclusion' panicked at 'Unable to find BAM file tests/data/7seqs.reads_for_seq1_and_seq2.bam: InvalidPath', src/libcore/result.rs:1165:5 [INFO] [stdout] [INFO] [stdout] ---- genome::tests::test_fill_genome_length_backwards2 stdout ---- [INFO] [stdout] thread 'genome::tests::test_fill_genome_length_backwards2' panicked at 'called `Result::unwrap()` on an `Err` value: InvalidPath', src/libcore/result.rs:1165:5 [INFO] [stdout] [INFO] [stdout] ---- genome::tests::test_fill_genome_length_backwards1 stdout ---- [INFO] [stdout] thread 'genome::tests::test_fill_genome_length_backwards1' panicked at 'called `Result::unwrap()` on an `Err` value: InvalidPath', src/libcore/result.rs:1165:5 [INFO] [stdout] [INFO] [stdout] ---- genome::tests::test_fill_genome_length_backwards3 stdout ---- [INFO] [stdout] thread 'genome::tests::test_fill_genome_length_backwards3' panicked at 'called `Result::unwrap()` on an `Err` value: InvalidPath', src/libcore/result.rs:1165:5 [INFO] [stdout] [INFO] [stdout] ---- genome::tests::test_multiple_outputs_one_zero_no_print_zeroes_separator stdout ---- [INFO] [stdout] thread 'genome::tests::test_multiple_outputs_one_zero_no_print_zeroes_separator' panicked at 'Unable to find BAM file tests/data/7seqs.reads_for_seq1.bam: InvalidPath', src/libcore/result.rs:1165:5 [INFO] [stdout] [INFO] [stdout] ---- genome::tests::test_multiple_outputs_one_zero_no_print_zeroes_single_genome stdout ---- [INFO] [stdout] thread 'genome::tests::test_multiple_outputs_one_zero_no_print_zeroes_single_genome' panicked at 'Unable to find BAM file tests/data/2seqs.reads_for_seq1.bam: InvalidPath', src/libcore/result.rs:1165:5 [INFO] [stdout] [INFO] [stdout] ---- genome::tests::test_julian_error stdout ---- [INFO] [stdout] thread 'genome::tests::test_julian_error' panicked at 'Unable to find BAM file tests/data/2seqs.reads_for_seq1.with_unmapped.bam: InvalidPath', src/libcore/result.rs:1165:5 [INFO] [stdout] [INFO] [stdout] ---- genome::tests::test_one_genome_two_contigs_both_covered stdout ---- [INFO] [stdout] thread 'genome::tests::test_one_genome_two_contigs_both_covered' panicked at 'Unable to find BAM file tests/data/2seqs.reads_for_seq1_and_seq2.bam: InvalidPath', src/libcore/result.rs:1165:5 [INFO] [stdout] [INFO] [stdout] ---- genome::tests::test_one_genome_two_contigs_first_covered stdout ---- [INFO] [stdout] thread 'genome::tests::test_one_genome_two_contigs_first_covered' panicked at 'Unable to find BAM file tests/data/2seqs.reads_for_seq1.bam: InvalidPath', src/libcore/result.rs:1165:5 [INFO] [stdout] [INFO] [stdout] ---- genome::tests::test_multiple_outputs_one_zero_no_print_zeroes_separator_reverse stdout ---- [INFO] [stdout] thread 'genome::tests::test_multiple_outputs_one_zero_no_print_zeroes_separator_reverse' panicked at 'Unable to find BAM file tests/data/7seqs.reads_for_seq1.bam: InvalidPath', src/libcore/result.rs:1165:5 [INFO] [stdout] [INFO] [stdout] ---- genome::tests::test_multiple_outputs_one_zero_no_print_zeroes_single_genome_reverse stdout ---- [INFO] [stdout] thread 'genome::tests::test_multiple_outputs_one_zero_no_print_zeroes_single_genome_reverse' panicked at 'Unable to find BAM file tests/data/2seqs.reads_for_seq1.bam: InvalidPath', src/libcore/result.rs:1165:5 [INFO] [stdout] [INFO] [stdout] ---- genome::tests::test_one_genome_min_fraction_covered_just_ok stdout ---- [INFO] [stdout] thread 'genome::tests::test_one_genome_min_fraction_covered_just_ok' panicked at 'Unable to find BAM file tests/data/2seqs.reads_for_seq1_and_seq2.bam: InvalidPath', src/libcore/result.rs:1165:5 [INFO] [stdout] [INFO] [stdout] ---- genome::tests::test_one_genome_min_fraction_covered_under_min stdout ---- [INFO] [stdout] thread 'genome::tests::test_one_genome_min_fraction_covered_under_min' panicked at 'Unable to find BAM file tests/data/2seqs.reads_for_seq1_and_seq2.bam: InvalidPath', src/libcore/result.rs:1165:5 [INFO] [stdout] [INFO] [stdout] ---- genome::tests::test_genomes_and_contigs_reads_mapped stdout ---- [INFO] [stdout] thread 'genome::tests::test_genomes_and_contigs_reads_mapped' panicked at 'Unable to find BAM file tests/data/7seqs.reads_for_seq1_and_seq2.bam: InvalidPath', src/libcore/result.rs:1165:5 [INFO] [stdout] [INFO] [stdout] ---- genome::tests::test_one_genome_min_fraction_covered_under_min_contig_names stdout ---- [INFO] [stdout] thread 'genome::tests::test_one_genome_min_fraction_covered_under_min_contig_names' panicked at 'Unable to find BAM file tests/data/2seqs.reads_for_seq1_and_seq2.bam: InvalidPath', src/libcore/result.rs:1165:5 [INFO] [stdout] [INFO] [stdout] ---- genome::tests::test_one_genome_two_contigs_second_covered stdout ---- [INFO] [stdout] thread 'genome::tests::test_one_genome_two_contigs_second_covered' panicked at 'Unable to find BAM file tests/data/2seqs.reads_for_seq2.bam: InvalidPath', src/libcore/result.rs:1165:5 [INFO] [stdout] [INFO] [stdout] ---- genome::tests::test_one_genome_two_contigs_first_covered_contig_names stdout ---- [INFO] [stdout] thread 'genome::tests::test_one_genome_two_contigs_first_covered_contig_names' panicked at 'Unable to find BAM file tests/data/2seqs.reads_for_seq1.bam: InvalidPath', src/libcore/result.rs:1165:5 [INFO] [stdout] [INFO] [stdout] ---- genome::tests::test_one_genome_two_contigs_second_covered_contig_names stdout ---- [INFO] [stdout] thread 'genome::tests::test_one_genome_two_contigs_second_covered_contig_names' panicked at 'Unable to find BAM file tests/data/2seqs.reads_for_seq2.bam: InvalidPath', src/libcore/result.rs:1165:5 [INFO] [stdout] [INFO] [stdout] ---- genome::tests::test_one_genome_min_fraction_covered_just_ok_contig_names stdout ---- [INFO] [stdout] thread 'genome::tests::test_one_genome_min_fraction_covered_just_ok_contig_names' panicked at 'Unable to find BAM file tests/data/2seqs.reads_for_seq1_and_seq2.bam: InvalidPath', src/libcore/result.rs:1165:5 [INFO] [stdout] [INFO] [stdout] ---- genome::tests::test_one_genome_two_contigs_both_covered_contig_names stdout ---- [INFO] [stdout] thread 'genome::tests::test_one_genome_two_contigs_both_covered_contig_names' panicked at 'Unable to find BAM file tests/data/2seqs.reads_for_seq1_and_seq2.bam: InvalidPath', src/libcore/result.rs:1165:5 [INFO] [stdout] [INFO] [stdout] ---- genome::tests::test_print_previous_zero_coverage_genomes2 stdout ---- [INFO] [stdout] thread 'genome::tests::test_print_previous_zero_coverage_genomes2' panicked at 'called `Result::unwrap()` on an `Err` value: InvalidPath', src/libcore/result.rs:1165:5 [INFO] [stdout] [INFO] [stdout] ---- genome::tests::test_read_count_calculator stdout ---- [INFO] [stdout] thread 'genome::tests::test_read_count_calculator' panicked at 'Unable to find BAM file tests/data/7seqs.reads_for_seq1.bam: InvalidPath', src/libcore/result.rs:1165:5 [INFO] [stdout] [INFO] [stdout] ---- genome::tests::test_print_previous_zero_coverage_genomes2_length_estimator stdout ---- [INFO] [stdout] thread 'genome::tests::test_print_previous_zero_coverage_genomes2_length_estimator' panicked at 'called `Result::unwrap()` on an `Err` value: InvalidPath', src/libcore/result.rs:1165:5 [INFO] [stdout] [INFO] [stdout] ---- genome::tests::test_two_contigs_trimmed_mean stdout ---- [INFO] [stdout] thread 'genome::tests::test_two_contigs_trimmed_mean' panicked at 'Unable to find BAM file tests/data/2seqs.reads_for_seq1_and_seq2.bam: InvalidPath', src/libcore/result.rs:1165:5 [INFO] [stdout] [INFO] [stdout] ---- genome::tests::test_read_count_below_min_covered stdout ---- [INFO] [stdout] thread 'genome::tests::test_read_count_below_min_covered' panicked at 'Unable to find BAM file tests/data/7seqs.reads_for_seq1.bam: InvalidPath', src/libcore/result.rs:1165:5 [INFO] [stdout] [INFO] [stdout] ---- genome::tests::test_sharded_bams_with_zero_coverage stdout ---- [INFO] [stdout] thread 'genome::tests::test_sharded_bams_with_zero_coverage' panicked at 'Unable to open bam file tests/data/shard1.bam: InvalidPath', src/libcore/result.rs:1165:5 [INFO] [stdout] [INFO] [stdout] ---- genome::tests::test_two_contigs_pileup_counts_estimator_contig_names stdout ---- [INFO] [stdout] thread 'genome::tests::test_two_contigs_pileup_counts_estimator_contig_names' panicked at 'Unable to find BAM file tests/data/2seqs.reads_for_seq1_and_seq2.bam: InvalidPath', src/libcore/result.rs:1165:5 [INFO] [stdout] [INFO] [stdout] ---- genome::tests::test_single_genome stdout ---- [INFO] [stdout] thread 'genome::tests::test_single_genome' panicked at 'Unable to find BAM file tests/data/7seqs.reads_for_seq1_and_seq2.bam: InvalidPath', src/libcore/result.rs:1165:5 [INFO] [stdout] [INFO] [stdout] ---- genome::tests::test_two_contigs_trimmed_mean_contig_names stdout ---- [INFO] [stdout] thread 'genome::tests::test_two_contigs_trimmed_mean_contig_names' panicked at 'Unable to find BAM file tests/data/2seqs.reads_for_seq1_and_seq2.bam: InvalidPath', src/libcore/result.rs:1165:5 [INFO] [stdout] [INFO] [stdout] ---- genome::tests::test_zero_coverage_genomes stdout ---- [INFO] [stdout] thread 'genome::tests::test_zero_coverage_genomes' panicked at 'Unable to find BAM file tests/data/7seqs.reads_for_seq1_and_seq2.bam: InvalidPath', src/libcore/result.rs:1165:5 [INFO] [stdout] [INFO] [stdout] ---- genome::tests::test_sharded_bams_with_genome_exclusion stdout ---- [INFO] [stdout] thread 'genome::tests::test_sharded_bams_with_genome_exclusion' panicked at 'Unable to open bam file tests/data/shard1.bam: InvalidPath', src/libcore/result.rs:1165:5 [INFO] [stdout] [INFO] [stdout] ---- genome::tests::test_two_contigs_pileup_counts_estimator stdout ---- [INFO] [stdout] thread 'genome::tests::test_two_contigs_pileup_counts_estimator' panicked at 'Unable to find BAM file tests/data/2seqs.reads_for_seq1_and_seq2.bam: InvalidPath', src/libcore/result.rs:1165:5 [INFO] [stdout] [INFO] [stdout] ---- genome::tests::test_read_count_below_min_covered_genomes_and_contigs stdout ---- [INFO] [stdout] thread 'genome::tests::test_read_count_below_min_covered_genomes_and_contigs' panicked at 'Unable to find BAM file tests/data/7seqs.reads_for_seq1_and_seq2.bam: InvalidPath', src/libcore/result.rs:1165:5 [INFO] [stdout] [INFO] [stdout] ---- shard_bam_reader::tests::test_shard_hello_world stdout ---- [INFO] [stdout] thread 'shard_bam_reader::tests::test_shard_hello_world' panicked at 'called `Result::unwrap()` on an `Err` value: InvalidPath', src/libcore/result.rs:1165:5 [INFO] [stdout] [INFO] [stdout] ---- genome::tests::test_zero_coverage_genomes_contig_names stdout ---- [INFO] [stdout] thread 'genome::tests::test_zero_coverage_genomes_contig_names' panicked at 'Unable to find BAM file tests/data/7seqs.reads_for_seq1_and_seq2.bam: InvalidPath', src/libcore/result.rs:1165:5 [INFO] [stdout] [INFO] [stdout] ---- tests::test_read_genome_fasta_files_one_genome stdout ---- [INFO] [stdout] thread 'tests::test_read_genome_fasta_files_one_genome' panicked at 'Unable to read fasta file tests/data/genome1.fna: Os { code: 2, kind: NotFound, message: "No such file or directory" }', src/libcore/result.rs:1165:5 [INFO] [stdout] [INFO] [stdout] ---- genome::tests::test_zero_coverage_genomes_after_min_fraction stdout ---- [INFO] [stdout] thread 'genome::tests::test_zero_coverage_genomes_after_min_fraction' panicked at 'Unable to find BAM file tests/data/7seqs.reads_for_seq1_and_seq2.bam: InvalidPath', src/libcore/result.rs:1165:5 [INFO] [stdout] [INFO] [stdout] ---- genome::tests::test_zero_coverage_genomes_contig_names_with_multiple_methods stdout ---- [INFO] [stdout] thread 'genome::tests::test_zero_coverage_genomes_contig_names_with_multiple_methods' panicked at 'Unable to find BAM file tests/data/7seqs.reads_for_seq1_and_seq2.bam: InvalidPath', src/libcore/result.rs:1165:5 [INFO] [stdout] [INFO] [stdout] ---- contig::tests::test_julian_error stdout ---- [INFO] [stdout] thread 'contig::tests::test_julian_error' panicked at 'Unable to find BAM file tests/data/2seqs.reads_for_seq1.with_unmapped.bam: InvalidPath', src/libcore/result.rs:1165:5 [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x55ba2e6f1e64 - backtrace::backtrace::libunwind::trace::hf625d18232cbbbd4 [INFO] [stdout] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.37/src/backtrace/libunwind.rs:88 [INFO] [stdout] 1: 0x55ba2e6f1e64 - backtrace::backtrace::trace_unsynchronized::h41d74150fc6ff542 [INFO] [stdout] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.37/src/backtrace/mod.rs:66 [INFO] [stdout] 2: 0x55ba2e6f1e64 - std::sys_common::backtrace::_print_fmt::h85d37830c667a1f9 [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:76 [INFO] [stdout] 3: 0x55ba2e6f1e64 - ::fmt::h2b7ac01d5feaf9b2 [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:60 [INFO] [stdout] 4: 0x55ba2e716f8c - core::fmt::write::h7fd0d904495c035f [INFO] [stdout] at src/libcore/fmt/mod.rs:1030 [INFO] [stdout] 5: 0x55ba2e363c45 - std::io::Write::write_fmt::h424452e6ba861394 [INFO] [stdout] at /rustc/5752b6348ee6971573b278c315a02193c847ee32/src/libstd/io/mod.rs:1412 [INFO] [stdout] 6: 0x55ba2e6ed3a1 - std::io::impls::>::write_fmt::h814a51d8ae1dee4a [INFO] [stdout] at src/libstd/io/impls.rs:141 [INFO] [stdout] 7: 0x55ba2e6f49d5 - std::sys_common::backtrace::_print::h4c743f7c274a5a74 [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:64 [INFO] [stdout] 8: 0x55ba2e6f49d5 - std::sys_common::backtrace::print::ha5c4f4bf03800d4d [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:49 [INFO] [stdout] 9: 0x55ba2e6f49d5 - std::panicking::default_hook::{{closure}}::h8b842185774c09e6 [INFO] [stdout] at src/libstd/panicking.rs:196 [INFO] [stdout] 10: 0x55ba2e6f465c - std::panicking::default_hook::hd8ec13ee1bc2a65a [INFO] [stdout] at src/libstd/panicking.rs:207 [INFO] [stdout] 11: 0x55ba2e6f50d5 - std::panicking::rust_panic_with_hook::hf3b27166e5f403e7 [INFO] [stdout] at src/libstd/panicking.rs:473 [INFO] [stdout] 12: 0x55ba2e6f4c72 - std::panicking::continue_panic_fmt::hd961751be84a6f83 [INFO] [stdout] at src/libstd/panicking.rs:380 [INFO] [stdout] 13: 0x55ba2e6f4b66 - rust_begin_unwind [INFO] [stdout] at src/libstd/panicking.rs:307 [INFO] [stdout] 14: 0x55ba2e71322a - core::panicking::panic_fmt::h467e0364f9237670 [INFO] [stdout] at src/libcore/panicking.rs:85 [INFO] [stdout] 15: 0x55ba2e713327 - core::result::unwrap_failed::h38f3a56f1dadf080 [INFO] [stdout] at src/libcore/result.rs:1165 [INFO] [stdout] 16: 0x55ba2e308282 - core::result::Result::expect::he11916fce6e4e571 [INFO] [stdout] at /rustc/5752b6348ee6971573b278c315a02193c847ee32/src/libcore/result.rs:960 [INFO] [stdout] 17: 0x55ba2e2ed284 - coverm::bam_generator::generate_named_bam_readers_from_bam_files::{{closure}}::hb125949256214834 [INFO] [stdout] at src/bam_generator.rs:194 [INFO] [stdout] 18: 0x55ba2e2bff11 - core::iter::adapters::map_fold::{{closure}}::h4ede2ed7daaa1b6f [INFO] [stdout] at /rustc/5752b6348ee6971573b278c315a02193c847ee32/src/libcore/iter/adapters/mod.rs:694 [INFO] [stdout] 19: 0x55ba2e29b50b - as core::iter::traits::iterator::Iterator>::fold::h2615b3d453396444 [INFO] [stdout] at /rustc/5752b6348ee6971573b278c315a02193c847ee32/src/libcore/slice/mod.rs:3213 [INFO] [stdout] 20: 0x55ba2e2c288a - as core::iter::traits::iterator::Iterator>::fold::h0b6db124e8537c83 [INFO] [stdout] at /rustc/5752b6348ee6971573b278c315a02193c847ee32/src/libcore/iter/adapters/mod.rs:727 [INFO] [stdout] 21: 0x55ba2e2bde0b - core::iter::traits::iterator::Iterator::for_each::h3277080812f22f97 [INFO] [stdout] at /rustc/5752b6348ee6971573b278c315a02193c847ee32/src/libcore/iter/traits/iterator.rs:616 [INFO] [stdout] 22: 0x55ba2e291cab - as alloc::vec::SpecExtend>::spec_extend::h90bb351ac409d7a7 [INFO] [stdout] at /rustc/5752b6348ee6971573b278c315a02193c847ee32/src/liballoc/vec.rs:1966 [INFO] [stdout] 23: 0x55ba2e293f09 - as alloc::vec::SpecExtend>::from_iter::hb596fa07ce6a04af [INFO] [stdout] at /rustc/5752b6348ee6971573b278c315a02193c847ee32/src/liballoc/vec.rs:1949 [INFO] [stdout] 24: 0x55ba2e296d2b - as core::iter::traits::collect::FromIterator>::from_iter::hb215d22d0ae8ced6 [INFO] [stdout] at /rustc/5752b6348ee6971573b278c315a02193c847ee32/src/liballoc/vec.rs:1836 [INFO] [stdout] 25: 0x55ba2e2bda44 - core::iter::traits::iterator::Iterator::collect::h30fea1dbeb585946 [INFO] [stdout] at /rustc/5752b6348ee6971573b278c315a02193c847ee32/src/libcore/iter/traits/iterator.rs:1478 [INFO] [stdout] 26: 0x55ba2e2ed044 - coverm::bam_generator::generate_named_bam_readers_from_bam_files::hf98bb7504813a2f2 [INFO] [stdout] at src/bam_generator.rs:188 [INFO] [stdout] 27: 0x55ba2e2acbfe - coverm::contig::tests::test_julian_error::h9f97da50a1e3f3a2 [INFO] [stdout] at src/contig.rs:369 [INFO] [stdout] 28: 0x55ba2e2acb8a - coverm::contig::tests::test_julian_error::{{closure}}::hbaeb2352996040c1 [INFO] [stdout] at src/contig.rs:364 [INFO] [stdout] 29: 0x55ba2e2e1f7e - core::ops::function::FnOnce::call_once::h964863f262901b41 [INFO] [stdout] at /rustc/5752b6348ee6971573b278c315a02193c847ee32/src/libcore/ops/function.rs:227 [INFO] [stdout] 30: 0x55ba2e36db3f - as core::ops::function::FnOnce>::call_once::h8b428e8a43aaf8e9 [INFO] [stdout] at /rustc/5752b6348ee6971573b278c315a02193c847ee32/src/liballoc/boxed.rs:922 [INFO] [stdout] 31: 0x55ba2e6fc72a - __rust_maybe_catch_panic [INFO] [stdout] at src/libpanic_unwind/lib.rs:80 [INFO] [stdout] 32: 0x55ba2e38834e - std::panicking::try::heccce20d527a3513 [INFO] [stdout] at /rustc/5752b6348ee6971573b278c315a02193c847ee32/src/libstd/panicking.rs:271 [INFO] [stdout] 33: 0x55ba2e38834e - std::panic::catch_unwind::h7fd8f5d3271f1692 [INFO] [stdout] at /rustc/5752b6348ee6971573b278c315a02193c847ee32/src/libstd/panic.rs:394 [INFO] [stdout] 34: 0x55ba2e38834e - test::run_test::run_test_inner::{{closure}}::h88b46e5c359957e5 [INFO] [stdout] at src/libtest/lib.rs:1413 [INFO] [stdout] 35: 0x55ba2e3633b5 - std::sys_common::backtrace::__rust_begin_short_backtrace::h00847676c8212941 [INFO] [stdout] at /rustc/5752b6348ee6971573b278c315a02193c847ee32/src/libstd/sys_common/backtrace.rs:126 [INFO] [stdout] 36: 0x55ba2e367545 - std::thread::Builder::spawn_unchecked::{{closure}}::{{closure}}::h5dd37acd2295488e [INFO] [stdout] at /rustc/5752b6348ee6971573b278c315a02193c847ee32/src/libstd/thread/mod.rs:470 [INFO] [stdout] 37: 0x55ba2e367545 - as core::ops::function::FnOnce<()>>::call_once::h9d32b103da0b97c6 [INFO] [stdout] at /rustc/5752b6348ee6971573b278c315a02193c847ee32/src/libstd/panic.rs:315 [INFO] [stdout] 38: 0x55ba2e367545 - std::panicking::try::do_call::h2bd819a3056c57cd [INFO] [stdout] at /rustc/5752b6348ee6971573b278c315a02193c847ee32/src/libstd/panicking.rs:292 [INFO] [stdout] 39: 0x55ba2e6fc72a - __rust_maybe_catch_panic [INFO] [stdout] at src/libpanic_unwind/lib.rs:80 [INFO] [stdout] 40: 0x55ba2e367af2 - std::panicking::try::h243a25457a848a1a [INFO] [stdout] at /rustc/5752b6348ee6971573b278c315a02193c847ee32/src/libstd/panicking.rs:271 [INFO] [stdout] 41: 0x55ba2e367af2 - std::panic::catch_unwind::h74b81f55e55e757c [INFO] [stdout] at /rustc/5752b6348ee6971573b278c315a02193c847ee32/src/libstd/panic.rs:394 [INFO] [stdout] 42: 0x55ba2e367af2 - std::thread::Builder::spawn_unchecked::{{closure}}::h4c2d214a2cffa6cf [INFO] [stdout] at /rustc/5752b6348ee6971573b278c315a02193c847ee32/src/libstd/thread/mod.rs:469 [INFO] [stdout] 43: 0x55ba2e367af2 - core::ops::function::FnOnce::call_once{{vtable.shim}}::h8a8a187b3fb58e53 [INFO] [stdout] at /rustc/5752b6348ee6971573b278c315a02193c847ee32/src/libcore/ops/function.rs:227 [INFO] [stdout] 44: 0x55ba2e6e8d1f - as core::ops::function::FnOnce>::call_once::h3cdef3b7ea22cd61 [INFO] [stdout] at /rustc/5752b6348ee6971573b278c315a02193c847ee32/src/liballoc/boxed.rs:922 [INFO] [stdout] 45: 0x55ba2e6fba90 - as core::ops::function::FnOnce>::call_once::hc8f25720bf0d5424 [INFO] [stdout] at /rustc/5752b6348ee6971573b278c315a02193c847ee32/src/liballoc/boxed.rs:922 [INFO] [stdout] 46: 0x55ba2e6fba90 - std::sys_common::thread::start_thread::h7e8885ccfd5d1932 [INFO] [stdout] at src/libstd/sys_common/thread.rs:13 [INFO] [stdout] 47: 0x55ba2e6fba90 - std::sys::unix::thread::Thread::new::thread_start::h5d24df932d688baf [INFO] [stdout] at src/libstd/sys/unix/thread.rs:79 [INFO] [stdout] 48: 0x7f3ba2ac16db - start_thread [INFO] [stdout] 49: 0x7f3ba25d288f - __clone [INFO] [stdout] 50: 0x0 - [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] contig::tests::test_contig_end_exclusion [INFO] [stdout] contig::tests::test_julian_error [INFO] [stdout] contig::tests::test_multiple_coverage_methods [INFO] [stdout] contig::tests::test_multiple_outputs_one_zero_no_print_zeroes [INFO] [stdout] contig::tests::test_multiple_outputs_one_zero_no_print_zeroes_reverse_order [INFO] [stdout] contig::tests::test_one_contig_variance [INFO] [stdout] contig::tests::test_one_genome_two_contigs_first_covered [INFO] [stdout] contig::tests::test_one_genome_two_contigs_first_covered_no_zeros [INFO] [stdout] contig::tests::test_one_read_of_pair_mapped [INFO] [stdout] contig::tests::test_proper_pairs_only [INFO] [stdout] contig::tests::test_reads_not_counting_when_insufficient_min_covered [INFO] [stdout] contig::tests::test_reads_not_counting_when_sufficient_min_covered [INFO] [stdout] contig::tests::test_reads_per_base_estimator [INFO] [stdout] contig::tests::test_sharded_bams_some_not_covered [INFO] [stdout] contig::tests::test_streaming_bam_file [INFO] [stdout] contig::tests::test_trimmed_mean_bug [INFO] [stdout] contig::tests::test_variance_estimator_all_bases_covered [INFO] [stdout] filter::tests::test_filter_single_and_paired_reads [INFO] [stdout] filter::tests::test_filter_single_and_paired_reads_inverse [INFO] [stdout] filter::tests::test_filter_single_reads [INFO] [stdout] filter::tests::test_filter_single_reads_inverse [INFO] [stdout] filter::tests::test_first_encountered_read_having_negative_insert_length [INFO] [stdout] filter::tests::test_hello_world [INFO] [stdout] filter::tests::test_hello_world_inverse [INFO] [stdout] filter::tests::test_one_bad_read [INFO] [stdout] filter::tests::test_one_bad_read_inverse [INFO] [stdout] genome::tests::test_covered_bases_estimator [INFO] [stdout] genome::tests::test_covered_bases_estimator_contig_end_exclusion [INFO] [stdout] genome::tests::test_fill_genome_length_backwards1 [INFO] [stdout] genome::tests::test_fill_genome_length_backwards2 [INFO] [stdout] genome::tests::test_fill_genome_length_backwards3 [INFO] [stdout] genome::tests::test_genomes_and_contigs_reads_mapped [INFO] [stdout] genome::tests::test_julian_error [INFO] [stdout] genome::tests::test_multiple_outputs_one_zero_no_print_zeroes_separator [INFO] [stdout] genome::tests::test_multiple_outputs_one_zero_no_print_zeroes_separator_reverse [INFO] [stdout] genome::tests::test_multiple_outputs_one_zero_no_print_zeroes_single_genome [INFO] [stdout] genome::tests::test_multiple_outputs_one_zero_no_print_zeroes_single_genome_reverse [INFO] [stdout] genome::tests::test_one_genome_min_fraction_covered_just_ok [INFO] [stdout] genome::tests::test_one_genome_min_fraction_covered_just_ok_contig_names [INFO] [stdout] genome::tests::test_one_genome_min_fraction_covered_under_min [INFO] [stdout] genome::tests::test_one_genome_min_fraction_covered_under_min_contig_names [INFO] [stdout] genome::tests::test_one_genome_two_contigs_both_covered [INFO] [stdout] genome::tests::test_one_genome_two_contigs_both_covered_contig_names [INFO] [stdout] genome::tests::test_one_genome_two_contigs_first_covered [INFO] [stdout] genome::tests::test_one_genome_two_contigs_first_covered_contig_names [INFO] [stdout] genome::tests::test_one_genome_two_contigs_second_covered [INFO] [stdout] genome::tests::test_one_genome_two_contigs_second_covered_contig_names [INFO] [stdout] genome::tests::test_print_previous_zero_coverage_genomes2 [INFO] [stdout] genome::tests::test_print_previous_zero_coverage_genomes2_length_estimator [INFO] [stdout] genome::tests::test_read_count_below_min_covered [INFO] [stdout] genome::tests::test_read_count_below_min_covered_genomes_and_contigs [INFO] [stdout] genome::tests::test_read_count_calculator [INFO] [stdout] genome::tests::test_sharded_bams_with_genome_exclusion [INFO] [stdout] genome::tests::test_sharded_bams_with_zero_coverage [INFO] [stdout] genome::tests::test_single_genome [INFO] [stdout] genome::tests::test_two_contigs_pileup_counts_estimator [INFO] [stdout] genome::tests::test_two_contigs_pileup_counts_estimator_contig_names [INFO] [stdout] genome::tests::test_two_contigs_trimmed_mean [INFO] [stdout] genome::tests::test_two_contigs_trimmed_mean_contig_names [INFO] [stdout] genome::tests::test_zero_coverage_genomes [INFO] [stdout] genome::tests::test_zero_coverage_genomes_after_min_fraction [INFO] [stdout] genome::tests::test_zero_coverage_genomes_contig_names [INFO] [stdout] genome::tests::test_zero_coverage_genomes_contig_names_with_multiple_methods [INFO] [stdout] shard_bam_reader::tests::test_shard_hello_world [INFO] [stdout] tests::test_read_genome_fasta_files_one_genome [INFO] [stdout] [INFO] [stdout] test result: FAILED. 11 passed; 65 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] [stderr] error: test failed, to rerun pass '--lib' [INFO] running `"docker" "inspect" "c2aba5623ebe44afc4db958ce4154fdd77d6236443ccf52e430ba776ed024514"` [INFO] running `"docker" "rm" "-f" "c2aba5623ebe44afc4db958ce4154fdd77d6236443ccf52e430ba776ed024514"` [INFO] [stdout] c2aba5623ebe44afc4db958ce4154fdd77d6236443ccf52e430ba776ed024514