[INFO] crate bio-types 0.5.1 is already in cache [INFO] testing bio-types-0.5.1 against beta-2019-09-28 for beta-1.39-1 [INFO] extracting crate bio-types 0.5.1 into work/builds/worker-0/source [INFO] validating manifest of crates.io crate bio-types 0.5.1 on toolchain beta-2019-09-28 [INFO] running `"/big/crater/work/cargo-home/bin/cargo" "+beta-2019-09-28" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] started tweaking crates.io crate bio-types 0.5.1 [INFO] finished tweaking crates.io crate bio-types 0.5.1 [INFO] tweaked toml for crates.io crate bio-types 0.5.1 written to work/builds/worker-0/source/Cargo.toml [INFO] running `"/big/crater/work/cargo-home/bin/cargo" "+beta-2019-09-28" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update"` [INFO] running `"/big/crater/work/cargo-home/bin/cargo" "+beta-2019-09-28" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] [stderr] warning: only one of `license` or `license-file` is necessary [INFO] running `"docker" "create" "-v" "/big/crater/work/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/big/crater/work/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/big/crater/work/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/big/crater/work/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2019-09-28" "build" "--frozen"` [INFO] [stdout] bb6dc3b96b6e2096174e1ad18a5e8bfc13a2780dbbfde66986de94df4ba6ff82 [INFO] running `"docker" "start" "-a" "bb6dc3b96b6e2096174e1ad18a5e8bfc13a2780dbbfde66986de94df4ba6ff82"` [INFO] [stderr] warning: only one of `license` or `license-file` is necessary [INFO] [stderr] Compiling bio-types v0.5.1 (/opt/rustwide/workdir) [INFO] [stderr] warning: unused doc comment [INFO] [stderr] --> src/annot/mod.rs:55:1 [INFO] [stderr] | [INFO] [stderr] 55 | /// Errors that arise in parsing annotations. [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] 56 | / quick_error! { [INFO] [stderr] 57 | | #[derive(Debug, Clone)] [INFO] [stderr] 58 | | pub enum ParseAnnotError { [INFO] [stderr] 59 | | BadAnnot { [INFO] [stderr] ... | [INFO] [stderr] 74 | | } [INFO] [stderr] 75 | | } [INFO] [stderr] | |_- rustdoc does not generate documentation for macro expansions [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_doc_comments)]` on by default [INFO] [stderr] = help: to document an item produced by a macro, the macro must produce the documentation as part of its expansion [INFO] [stderr] [INFO] [stderr] warning: unused doc comment [INFO] [stderr] --> src/annot/mod.rs:77:1 [INFO] [stderr] | [INFO] [stderr] 77 | /// Errors that arise in maniuplating annotations [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] 78 | / quick_error! { [INFO] [stderr] 79 | | #[derive(Debug, Clone)] [INFO] [stderr] 80 | | pub enum AnnotError { [INFO] [stderr] 81 | | NoStrand { [INFO] [stderr] ... | [INFO] [stderr] 87 | | } [INFO] [stderr] 88 | | } [INFO] [stderr] | |_- rustdoc does not generate documentation for macro expansions [INFO] [stderr] | [INFO] [stderr] = help: to document an item produced by a macro, the macro must produce the documentation as part of its expansion [INFO] [stderr] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 1.88s [INFO] running `"docker" "inspect" "bb6dc3b96b6e2096174e1ad18a5e8bfc13a2780dbbfde66986de94df4ba6ff82"` [INFO] running `"docker" "rm" "-f" "bb6dc3b96b6e2096174e1ad18a5e8bfc13a2780dbbfde66986de94df4ba6ff82"` [INFO] [stdout] bb6dc3b96b6e2096174e1ad18a5e8bfc13a2780dbbfde66986de94df4ba6ff82 [INFO] running `"docker" "create" "-v" "/big/crater/work/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/big/crater/work/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/big/crater/work/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/big/crater/work/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2019-09-28" "test" "--frozen" "--no-run"` [INFO] [stdout] 139cc36fd719401ebe48e0f5f36997849cb72564ddc0bfa727b80ac6c393ce24 [INFO] running `"docker" "start" "-a" "139cc36fd719401ebe48e0f5f36997849cb72564ddc0bfa727b80ac6c393ce24"` [INFO] [stderr] warning: only one of `license` or `license-file` is necessary [INFO] [stderr] Compiling bio-types v0.5.1 (/opt/rustwide/workdir) [INFO] [stderr] warning: unused doc comment [INFO] [stderr] --> src/annot/mod.rs:55:1 [INFO] [stderr] | [INFO] [stderr] 55 | /// Errors that arise in parsing annotations. [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] 56 | / quick_error! { [INFO] [stderr] 57 | | #[derive(Debug, Clone)] [INFO] [stderr] 58 | | pub enum ParseAnnotError { [INFO] [stderr] 59 | | BadAnnot { [INFO] [stderr] ... | [INFO] [stderr] 74 | | } [INFO] [stderr] 75 | | } [INFO] [stderr] | |_- rustdoc does not generate documentation for macro expansions [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_doc_comments)]` on by default [INFO] [stderr] = help: to document an item produced by a macro, the macro must produce the documentation as part of its expansion [INFO] [stderr] [INFO] [stderr] warning: unused doc comment [INFO] [stderr] --> src/annot/mod.rs:77:1 [INFO] [stderr] | [INFO] [stderr] 77 | /// Errors that arise in maniuplating annotations [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] 78 | / quick_error! { [INFO] [stderr] 79 | | #[derive(Debug, Clone)] [INFO] [stderr] 80 | | pub enum AnnotError { [INFO] [stderr] 81 | | NoStrand { [INFO] [stderr] ... | [INFO] [stderr] 87 | | } [INFO] [stderr] 88 | | } [INFO] [stderr] | |_- rustdoc does not generate documentation for macro expansions [INFO] [stderr] | [INFO] [stderr] = help: to document an item produced by a macro, the macro must produce the documentation as part of its expansion [INFO] [stderr] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 4.07s [INFO] running `"docker" "inspect" "139cc36fd719401ebe48e0f5f36997849cb72564ddc0bfa727b80ac6c393ce24"` [INFO] running `"docker" "rm" "-f" "139cc36fd719401ebe48e0f5f36997849cb72564ddc0bfa727b80ac6c393ce24"` [INFO] [stdout] 139cc36fd719401ebe48e0f5f36997849cb72564ddc0bfa727b80ac6c393ce24 [INFO] running `"docker" "create" "-v" "/big/crater/work/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/big/crater/work/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/big/crater/work/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/big/crater/work/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2019-09-28" "test" "--frozen"` [INFO] [stdout] 91a1ded2f61e935b414f00c01449e932f27bff78335b4a5f6a464bd00c6838ed [INFO] running `"docker" "start" "-a" "91a1ded2f61e935b414f00c01449e932f27bff78335b4a5f6a464bd00c6838ed"` [INFO] [stderr] warning: only one of `license` or `license-file` is necessary [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 0.01s [INFO] [stderr] Running /opt/rustwide/target/debug/deps/bio_types-70754845dff7d8fb [INFO] [stdout] [INFO] [stdout] running 13 tests [INFO] [stdout] test alignment::tests::test_pretty ... ok [INFO] [stdout] test alignment::tests::test_cigar ... ok [INFO] [stdout] test annot::pos::tests::loc_impl ... ok [INFO] [stdout] test annot::pos::tests::pos_accessors ... ok [INFO] [stdout] test strand::tests::test_strand ... ok [INFO] [stdout] test annot::pos::tests::strand_conversion ... ok [INFO] [stdout] test annot::pos::tests::string_representation ... ok [INFO] [stdout] test annot::contig::tests::first_and_last ... ok [INFO] [stdout] test annot::contig::tests::into_outof ... ok [INFO] [stdout] test annot::contig::tests::intersection ... ok [INFO] [stdout] test annot::spliced::tests::into_outof ... ok [INFO] [stdout] test annot::spliced::tests::intersection ... ok [INFO] [stdout] test annot::spliced::tests::length_start_to_contig ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 13 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] [stderr] Doc-tests bio-types [INFO] [stdout] [INFO] [stdout] running 15 tests [INFO] [stdout] test src/annot/contig.rs - annot::contig::Contig::new (line 57) ... FAILED [INFO] [stdout] test src/annot/pos.rs - annot::pos::Pos::sub_assign (line 131) ... FAILED [INFO] [stdout] test src/strand.rs - strand::ReqStrand::on_strand (line 153) ... FAILED [INFO] [stdout] test src/annot/pos.rs - annot::pos::Pos::new (line 55) ... FAILED [INFO] [stdout] test src/annot/spliced.rs - annot::spliced::Spliced (line 208) ... FAILED [INFO] [stdout] test src/annot/refids.rs - annot::refids::RefIDSet (line 14) ... FAILED [INFO] [stdout] test src/annot/contig.rs - annot::contig::Contig::extend_downstream (line 177) ... ok [INFO] [stdout] test src/annot/spliced.rs - annot::spliced::Spliced::new (line 238) ... ok [INFO] [stdout] test src/annot/contig.rs - annot::contig::Contig::extend_upstream (line 150) ... ok [INFO] [stdout] test src/annot/pos.rs - annot::pos::Pos::add_assign (line 100) ... ok [INFO] [stdout] test src/annot/mod.rs - annot (line 30) ... ok [INFO] [stdout] test src/annot/contig.rs - annot::contig::Contig (line 32) ... ok [INFO] [stdout] test src/alignment.rs - alignment::Alignment::cigar (line 89) ... ok [INFO] [stdout] test src/annot/pos.rs - annot::pos::Pos (line 31) ... ok [INFO] [stdout] test src/annot/contig.rs - annot::contig::Contig::with_first_length (line 82) ... ok [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] [INFO] [stdout] ---- src/annot/contig.rs - annot::contig::Contig::new (line 57) stdout ---- [INFO] [stdout] Couldn't compile the test. [INFO] [stdout] ---- src/annot/pos.rs - annot::pos::Pos::sub_assign (line 131) stdout ---- [INFO] [stdout] Couldn't compile the test. [INFO] [stdout] ---- src/strand.rs - strand::ReqStrand::on_strand (line 153) stdout ---- [INFO] [stdout] Couldn't compile the test. [INFO] [stdout] ---- src/annot/pos.rs - annot::pos::Pos::new (line 55) stdout ---- [INFO] [stdout] Couldn't compile the test. [INFO] [stdout] ---- src/annot/spliced.rs - annot::spliced::Spliced (line 208) stdout ---- [INFO] [stdout] Couldn't compile the test. [INFO] [stdout] ---- src/annot/refids.rs - annot::refids::RefIDSet (line 14) stdout ---- [INFO] [stdout] Couldn't compile the test. [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] src/annot/contig.rs - annot::contig::Contig::new (line 57) [INFO] [stdout] src/annot/pos.rs - annot::pos::Pos::sub_assign (line 131) [INFO] [stdout] src/annot/pos.rs - annot::pos::Pos::new (line 55) [INFO] [stdout] src/annot/refids.rs - annot::refids::RefIDSet (line 14) [INFO] [stdout] src/annot/spliced.rs - annot::spliced::Spliced (line 208) [INFO] [stdout] src/strand.rs - strand::ReqStrand::on_strand (line 153) [INFO] [stdout] [INFO] [stdout] test result: FAILED. 9 passed; 6 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] [stderr] error: test failed, to rerun pass '--doc' [INFO] running `"docker" "inspect" "91a1ded2f61e935b414f00c01449e932f27bff78335b4a5f6a464bd00c6838ed"` [INFO] running `"docker" "rm" "-f" "91a1ded2f61e935b414f00c01449e932f27bff78335b4a5f6a464bd00c6838ed"` [INFO] [stdout] 91a1ded2f61e935b414f00c01449e932f27bff78335b4a5f6a464bd00c6838ed