[INFO] updating cached repository https://github.com/mal2017/csc
[INFO] running `"git" "-c" "credential.helper=" "-c" "credential.helper=/big/crater/work/cargo-home/bin/git-credential-null" "-c" "remote.origin.fetch=refs/heads/*:refs/heads/*" "fetch" "origin" "--force" "--prune"`
[INFO] running `"git" "rev-parse" "HEAD"`
[INFO] [stdout] d03c33ee5c6bc2e7583bd50315cc6203d9f34510
[INFO] testing mal2017/csc against beta-2019-09-28 for beta-1.39-1
[INFO] running `"git" "clone" "work/cache/git-repos/https%3A%2F%2Fgithub.com%2Fmal2017%2Fcsc" "work/builds/worker-1/source"`
[INFO] [stderr] Cloning into 'work/builds/worker-1/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/mal2017/csc on toolchain beta-2019-09-28
[INFO] running `"/big/crater/work/cargo-home/bin/cargo" "+beta-2019-09-28" "read-manifest" "--manifest-path" "Cargo.toml"`
[INFO] started tweaking git repo https://github.com/mal2017/csc
[INFO] finished tweaking git repo https://github.com/mal2017/csc
[INFO] tweaked toml for git repo https://github.com/mal2017/csc written to work/builds/worker-1/source/Cargo.toml
[INFO] crate git repo https://github.com/mal2017/csc already has a lockfile, it will not be regenerated
[INFO] running `"/big/crater/work/cargo-home/bin/cargo" "+beta-2019-09-28" "fetch" "--locked" "--manifest-path" "Cargo.toml"`
[INFO] running `"docker" "create" "-v" "/big/crater/work/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/big/crater/work/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/big/crater/work/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/big/crater/work/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2019-09-28" "build" "--frozen"`
[INFO] [stdout] ea41fb1de006cea555e3d62e60b7ef94ea3510fe4987d0f8c52fc3b518a09c79
[INFO] running `"docker" "start" "-a" "ea41fb1de006cea555e3d62e60b7ef94ea3510fe4987d0f8c52fc3b518a09c79"`
[INFO] [stderr]    Compiling syn v0.15.31
[INFO] [stderr]    Compiling bindgen v0.36.1
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]    Compiling bio v0.25.0
[INFO] [stderr]    Compiling ieee754 v0.2.6
[INFO] [stderr]    Compiling linear-map v1.2.0
[INFO] [stderr]    Compiling libloading v0.5.0
[INFO] [stderr]    Compiling clang-sys v0.22.0
[INFO] [stderr]    Compiling lzma-sys v0.1.14
[INFO] [stderr]    Compiling libz-sys v1.0.25
[INFO] [stderr]    Compiling fs-utils v1.1.0
[INFO] [stderr]    Compiling itertools-num v0.1.3
[INFO] [stderr]    Compiling aho-corasick v0.6.10
[INFO] [stderr]    Compiling ndarray v0.12.1
[INFO] [stderr]    Compiling statrs v0.9.0
[INFO] [stderr]    Compiling env_logger v0.5.13
[INFO] [stderr]    Compiling bv v0.10.0
[INFO] [stderr]    Compiling regex v0.2.11
[INFO] [stderr]    Compiling serde_derive v1.0.90
[INFO] [stderr]    Compiling serde v1.0.90
[INFO] [stderr]    Compiling vec_map v0.8.1
[INFO] [stderr]    Compiling bio-types v0.4.0
[INFO] [stderr]    Compiling csv v1.0.7
[INFO] [stderr]    Compiling multimap v0.4.0
[INFO] [stderr]    Compiling clap v2.32.0
[INFO] [stderr]    Compiling rust-htslib v0.22.0
[INFO] [stderr]    Compiling ngslib v0.1.0 (https://github.com/mal2017/ngslib.git?tag=0.1.0-alpha.2#b34385bf)
[INFO] [stderr]    Compiling cutsites v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr] warning: unused import: `bio::io::bed::*`
[INFO] [stderr]   --> src/main.rs:10:5
[INFO] [stderr]    |
[INFO] [stderr] 10 | use bio::io::bed::*;
[INFO] [stderr]    |     ^^^^^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `#[warn(unused_imports)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: unused import: `bio::io::bed::Record`
[INFO] [stderr]   --> src/main.rs:11:5
[INFO] [stderr]    |
[INFO] [stderr] 11 | use bio::io::bed::Record;
[INFO] [stderr]    |     ^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: unused import: `itertools::Itertools`
[INFO] [stderr]   --> src/main.rs:19:5
[INFO] [stderr]    |
[INFO] [stderr] 19 | use itertools::Itertools;
[INFO] [stderr]    |     ^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: unused import: `ArgGroup`
[INFO] [stderr]   --> src/main.rs:25:26
[INFO] [stderr]    |
[INFO] [stderr] 25 |     use clap::{App, Arg, ArgGroup};
[INFO] [stderr]    |                          ^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: variable does not need to be mutable
[INFO] [stderr]    --> src/main.rs:101:9
[INFO] [stderr]     |
[INFO] [stderr] 101 |     let mut bam = bam::IndexedReader::from_path(bp).unwrap();
[INFO] [stderr]     |         ----^^^
[INFO] [stderr]     |         |
[INFO] [stderr]     |         help: remove this `mut`
[INFO] [stderr]     |
[INFO] [stderr]     = note: `#[warn(unused_mut)]` on by default
[INFO] [stderr] 
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 1m 13s
[INFO] running `"docker" "inspect" "ea41fb1de006cea555e3d62e60b7ef94ea3510fe4987d0f8c52fc3b518a09c79"`
[INFO] running `"docker" "rm" "-f" "ea41fb1de006cea555e3d62e60b7ef94ea3510fe4987d0f8c52fc3b518a09c79"`
[INFO] [stdout] ea41fb1de006cea555e3d62e60b7ef94ea3510fe4987d0f8c52fc3b518a09c79
[INFO] running `"docker" "create" "-v" "/big/crater/work/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/big/crater/work/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/big/crater/work/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/big/crater/work/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2019-09-28" "test" "--frozen" "--no-run"`
[INFO] [stdout] e673b0df905651c81fdb4da56181a3b6fdb7e5c646ba6fe0345b51d4e4e80b03
[INFO] running `"docker" "start" "-a" "e673b0df905651c81fdb4da56181a3b6fdb7e5c646ba6fe0345b51d4e4e80b03"`
[INFO] [stderr]    Compiling cutsites v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr] warning: unused import: `bio::io::bed::*`
[INFO] [stderr]   --> src/main.rs:10:5
[INFO] [stderr]    |
[INFO] [stderr] 10 | use bio::io::bed::*;
[INFO] [stderr]    |     ^^^^^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `#[warn(unused_imports)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: unused import: `bio::io::bed::Record`
[INFO] [stderr]   --> src/main.rs:11:5
[INFO] [stderr]    |
[INFO] [stderr] 11 | use bio::io::bed::Record;
[INFO] [stderr]    |     ^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: unused import: `itertools::Itertools`
[INFO] [stderr]   --> src/main.rs:19:5
[INFO] [stderr]    |
[INFO] [stderr] 19 | use itertools::Itertools;
[INFO] [stderr]    |     ^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: unused import: `ArgGroup`
[INFO] [stderr]   --> src/main.rs:25:26
[INFO] [stderr]    |
[INFO] [stderr] 25 |     use clap::{App, Arg, ArgGroup};
[INFO] [stderr]    |                          ^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: variable does not need to be mutable
[INFO] [stderr]    --> src/main.rs:101:9
[INFO] [stderr]     |
[INFO] [stderr] 101 |     let mut bam = bam::IndexedReader::from_path(bp).unwrap();
[INFO] [stderr]     |         ----^^^
[INFO] [stderr]     |         |
[INFO] [stderr]     |         help: remove this `mut`
[INFO] [stderr]     |
[INFO] [stderr]     = note: `#[warn(unused_mut)]` on by default
[INFO] [stderr] 
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 2.47s
[INFO] running `"docker" "inspect" "e673b0df905651c81fdb4da56181a3b6fdb7e5c646ba6fe0345b51d4e4e80b03"`
[INFO] running `"docker" "rm" "-f" "e673b0df905651c81fdb4da56181a3b6fdb7e5c646ba6fe0345b51d4e4e80b03"`
[INFO] [stdout] e673b0df905651c81fdb4da56181a3b6fdb7e5c646ba6fe0345b51d4e4e80b03
[INFO] running `"docker" "create" "-v" "/big/crater/work/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/big/crater/work/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/big/crater/work/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/big/crater/work/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2019-09-28" "test" "--frozen"`
[INFO] [stdout] fca93fc85d89b861c372afcb495c5c25d3dc523d8b6b8dcf66f289a3233bdf67
[INFO] running `"docker" "start" "-a" "fca93fc85d89b861c372afcb495c5c25d3dc523d8b6b8dcf66f289a3233bdf67"`
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 0.06s
[INFO] [stderr]      Running /opt/rustwide/target/debug/deps/cutsites-a280c0f5572c847a
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
[INFO] [stdout] 
[INFO] running `"docker" "inspect" "fca93fc85d89b861c372afcb495c5c25d3dc523d8b6b8dcf66f289a3233bdf67"`
[INFO] running `"docker" "rm" "-f" "fca93fc85d89b861c372afcb495c5c25d3dc523d8b6b8dcf66f289a3233bdf67"`
[INFO] [stdout] fca93fc85d89b861c372afcb495c5c25d3dc523d8b6b8dcf66f289a3233bdf67