[INFO] updating cached repository https://github.com/10XGenomics/vartrix
[INFO] running `"git" "-c" "credential.helper=" "-c" "credential.helper=/big/crater/work/cargo-home/bin/git-credential-null" "-c" "remote.origin.fetch=refs/heads/*:refs/heads/*" "fetch" "origin" "--force" "--prune"`
[INFO] running `"git" "rev-parse" "HEAD"`
[INFO] [stdout] a597657a62b4be43a6d9d069e3b49409957e0d50
[INFO] testing 10XGenomics/vartrix against beta-2019-09-28 for beta-1.39-1
[INFO] running `"git" "clone" "work/cache/git-repos/https%3A%2F%2Fgithub.com%2F10XGenomics%2Fvartrix" "work/builds/worker-10/source"`
[INFO] [stderr] Cloning into 'work/builds/worker-10/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/10XGenomics/vartrix on toolchain beta-2019-09-28
[INFO] running `"/big/crater/work/cargo-home/bin/cargo" "+beta-2019-09-28" "read-manifest" "--manifest-path" "Cargo.toml"`
[INFO] started tweaking git repo https://github.com/10XGenomics/vartrix
[INFO] finished tweaking git repo https://github.com/10XGenomics/vartrix
[INFO] tweaked toml for git repo https://github.com/10XGenomics/vartrix written to work/builds/worker-10/source/Cargo.toml
[INFO] crate git repo https://github.com/10XGenomics/vartrix already has a lockfile, it will not be regenerated
[INFO] running `"/big/crater/work/cargo-home/bin/cargo" "+beta-2019-09-28" "fetch" "--locked" "--manifest-path" "Cargo.toml"`
[INFO] [stderr] error: the lock file /big/crater/work/builds/worker-10/source/Cargo.lock needs to be updated but --locked was passed to prevent this
[INFO] the lockfile is outdated, regenerating it
[INFO] running `"/big/crater/work/cargo-home/bin/cargo" "+beta-2019-09-28" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update"`
[INFO] running `"/big/crater/work/cargo-home/bin/cargo" "+beta-2019-09-28" "fetch" "--locked" "--manifest-path" "Cargo.toml"`
[INFO] running `"docker" "create" "-v" "/big/crater/work/builds/worker-10/target:/opt/rustwide/target:rw,Z" "-v" "/big/crater/work/builds/worker-10/source:/opt/rustwide/workdir:ro,Z" "-v" "/big/crater/work/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/big/crater/work/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2019-09-28" "build" "--frozen"`
[INFO] [stdout] f235459bdf729fecfb8811593e3c9d29ce4fd630980a38e631f2776a69c001f9
[INFO] running `"docker" "start" "-a" "f235459bdf729fecfb8811593e3c9d29ce4fd630980a38e631f2776a69c001f9"`
[INFO] [stderr]    Compiling syn v1.0.5
[INFO] [stderr]    Compiling memchr v2.2.1
[INFO] [stderr]    Compiling bindgen v0.51.1
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]    Compiling bio v0.29.0
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling bytecount v0.6.0
[INFO] [stderr]    Compiling strum v0.16.0
[INFO] [stderr]    Compiling linear-map v1.2.0
[INFO] [stderr]    Compiling num-complex v0.2.3
[INFO] [stderr]    Compiling bzip2-sys v0.1.7
[INFO] [stderr]    Compiling lzma-sys v0.1.15
[INFO] [stderr]    Compiling fs-utils v1.1.1
[INFO] [stderr]    Compiling itertools v0.7.11
[INFO] [stderr]    Compiling itertools v0.6.5
[INFO] [stderr]    Compiling bit-set v0.5.1
[INFO] [stderr]    Compiling which v3.0.0
[INFO] [stderr]    Compiling terminal_size v0.1.8
[INFO] [stderr]    Compiling regex-automata v0.1.8
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling itertools-num v0.1.3
[INFO] [stderr]    Compiling clang-sys v0.28.1
[INFO] [stderr]    Compiling chrono v0.4.9
[INFO] [stderr]    Compiling alga v0.5.4
[INFO] [stderr]    Compiling snafu-derive v0.5.0
[INFO] [stderr]    Compiling bv v0.11.0
[INFO] [stderr]    Compiling statrs v0.11.0
[INFO] [stderr]    Compiling aho-corasick v0.7.6
[INFO] [stderr]    Compiling nom v4.2.3
[INFO] [stderr]    Compiling csv-core v0.1.6
[INFO] [stderr]    Compiling ndarray v0.12.1
[INFO] [stderr]    Compiling ndarray v0.13.0
[INFO] [stderr]    Compiling simplelog v0.5.3
[INFO] [stderr]    Compiling regex v1.3.1
[INFO] [stderr]    Compiling cexpr v0.3.5
[INFO] [stderr]    Compiling env_logger v0.6.2
[INFO] [stderr]    Compiling os_type v2.2.0
[INFO] [stderr]    Compiling snafu v0.5.0
[INFO] [stderr]    Compiling serde_derive v1.0.101
[INFO] [stderr]    Compiling strum_macros v0.16.0
[INFO] [stderr]    Compiling serde v1.0.101
[INFO] [stderr]    Compiling vec_map v0.8.1
[INFO] [stderr]    Compiling bstr v0.2.8
[INFO] [stderr]    Compiling bio-types v0.5.1
[INFO] [stderr]    Compiling toml v0.4.10
[INFO] [stderr]    Compiling multimap v0.6.0
[INFO] [stderr]    Compiling sprs v0.6.5
[INFO] [stderr]    Compiling docopt v1.1.0
[INFO] [stderr]    Compiling clap v2.33.0
[INFO] [stderr]    Compiling csv v1.1.1
[INFO] [stderr]    Compiling human-panic v1.0.1
[INFO] [stderr]    Compiling rust-htslib v0.26.0
[INFO] [stderr]    Compiling vartrix v1.1.7 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 2m 15s
[INFO] running `"docker" "inspect" "f235459bdf729fecfb8811593e3c9d29ce4fd630980a38e631f2776a69c001f9"`
[INFO] running `"docker" "rm" "-f" "f235459bdf729fecfb8811593e3c9d29ce4fd630980a38e631f2776a69c001f9"`
[INFO] [stdout] f235459bdf729fecfb8811593e3c9d29ce4fd630980a38e631f2776a69c001f9
[INFO] running `"docker" "create" "-v" "/big/crater/work/builds/worker-10/target:/opt/rustwide/target:rw,Z" "-v" "/big/crater/work/builds/worker-10/source:/opt/rustwide/workdir:ro,Z" "-v" "/big/crater/work/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/big/crater/work/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2019-09-28" "test" "--frozen" "--no-run"`
[INFO] [stdout] 0a7ddd2d09be238492b65f40219cf530f612c190694adf955003e4f5fefe8511
[INFO] running `"docker" "start" "-a" "0a7ddd2d09be238492b65f40219cf530f612c190694adf955003e4f5fefe8511"`
[INFO] [stderr]    Compiling vartrix v1.1.7 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 11.06s
[INFO] running `"docker" "inspect" "0a7ddd2d09be238492b65f40219cf530f612c190694adf955003e4f5fefe8511"`
[INFO] running `"docker" "rm" "-f" "0a7ddd2d09be238492b65f40219cf530f612c190694adf955003e4f5fefe8511"`
[INFO] [stdout] 0a7ddd2d09be238492b65f40219cf530f612c190694adf955003e4f5fefe8511
[INFO] running `"docker" "create" "-v" "/big/crater/work/builds/worker-10/target:/opt/rustwide/target:rw,Z" "-v" "/big/crater/work/builds/worker-10/source:/opt/rustwide/workdir:ro,Z" "-v" "/big/crater/work/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/big/crater/work/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2019-09-28" "test" "--frozen"`
[INFO] [stdout] 87d359da4daeb2167e2214d18236c7efede043c821b1d11efa5b5bafd133baca
[INFO] running `"docker" "start" "-a" "87d359da4daeb2167e2214d18236c7efede043c821b1d11efa5b5bafd133baca"`
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 1.04s
[INFO] [stderr]      Running /opt/rustwide/target/debug/deps/vartrix-8b7a6c8478eaeb3c
[INFO] [stdout] 
[INFO] [stdout] running 7 tests
[INFO] [stdout] test tests::test_coverage_matrices_umi_gzipped_bcs ... ok
[INFO] [stdout] test tests::test_consensus_matrix ... ok
[INFO] [stdout] test tests::test_frac_matrix ... ok
[INFO] [stdout] test tests::test_coverage_matrices_umi ... ok
[INFO] [stdout] test tests::test_coverage_matrices ... ok
[INFO] [stderr] 12:04:07 [ERROR] The resulting matrix has a sum of 0. Did you use the --umi flag on data without UMIs?
[INFO] [stdout] test tests::test_coverage_matrices_umi_dna ... ok
[INFO] [stdout] test tests::test_coverage_matrices_dna ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 7 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
[INFO] [stdout] 
[INFO] running `"docker" "inspect" "87d359da4daeb2167e2214d18236c7efede043c821b1d11efa5b5bafd133baca"`
[INFO] running `"docker" "rm" "-f" "87d359da4daeb2167e2214d18236c7efede043c821b1d11efa5b5bafd133baca"`
[INFO] [stdout] 87d359da4daeb2167e2214d18236c7efede043c821b1d11efa5b5bafd133baca