[INFO] updating cached repository https://github.com/10XGenomics/rust-pseudoaligner [INFO] running `"git" "-c" "credential.helper=" "-c" "credential.helper=/big/crater/work/cargo-home/bin/git-credential-null" "-c" "remote.origin.fetch=refs/heads/*:refs/heads/*" "fetch" "origin" "--force" "--prune"` [INFO] running `"git" "rev-parse" "HEAD"` [INFO] [stdout] f44c30fc1a6760a7a1ba79c4c95d92366bfc9c87 [INFO] testing 10XGenomics/rust-pseudoaligner against beta-2019-09-28 for beta-1.39-1 [INFO] running `"git" "clone" "work/cache/git-repos/https%3A%2F%2Fgithub.com%2F10XGenomics%2Frust-pseudoaligner" "work/builds/worker-7/source"` [INFO] [stderr] Cloning into 'work/builds/worker-7/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/10XGenomics/rust-pseudoaligner on toolchain beta-2019-09-28 [INFO] running `"/big/crater/work/cargo-home/bin/cargo" "+beta-2019-09-28" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] started tweaking git repo https://github.com/10XGenomics/rust-pseudoaligner [INFO] finished tweaking git repo https://github.com/10XGenomics/rust-pseudoaligner [INFO] tweaked toml for git repo https://github.com/10XGenomics/rust-pseudoaligner written to work/builds/worker-7/source/Cargo.toml [INFO] crate git repo https://github.com/10XGenomics/rust-pseudoaligner already has a lockfile, it will not be regenerated [INFO] running `"/big/crater/work/cargo-home/bin/cargo" "+beta-2019-09-28" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] [stderr] error: the lock file /big/crater/work/builds/worker-7/source/Cargo.lock needs to be updated but --locked was passed to prevent this [INFO] the lockfile is outdated, regenerating it [INFO] running `"/big/crater/work/cargo-home/bin/cargo" "+beta-2019-09-28" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update"` [INFO] [stderr] Updating git repository `https://github.com/10XGenomics/rust-debruijn` [INFO] [stderr] Updating git repository `https://github.com/k3yavi/pretty-env-logger` [INFO] running `"/big/crater/work/cargo-home/bin/cargo" "+beta-2019-09-28" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] running `"docker" "create" "-v" "/big/crater/work/builds/worker-7/target:/opt/rustwide/target:rw,Z" "-v" "/big/crater/work/builds/worker-7/source:/opt/rustwide/workdir:ro,Z" "-v" "/big/crater/work/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/big/crater/work/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2019-09-28" "build" "--frozen"` [INFO] [stdout] 3c0566e284de0f31c22272e172317d00bb3592b65b59af3f4a8b0ae532654b07 [INFO] running `"docker" "start" "-a" "3c0566e284de0f31c22272e172317d00bb3592b65b59af3f4a8b0ae532654b07"` [INFO] [stderr] Compiling log v0.4.8 [INFO] [stderr] Compiling ndarray v0.9.1 [INFO] [stderr] Compiling bv v0.7.4 [INFO] [stderr] Compiling spin v0.4.10 [INFO] [stderr] Compiling num-iter v0.1.39 [INFO] [stderr] Compiling bincode v1.2.0 [INFO] [stderr] Compiling itertools v0.6.5 [INFO] [stderr] Compiling wyhash v0.3.0 [INFO] [stderr] Compiling itertools v0.7.11 [INFO] [stderr] Compiling num-complex v0.2.3 [INFO] [stderr] Compiling num-rational v0.2.2 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling crossbeam-epoch v0.5.2 [INFO] [stderr] Compiling crossbeam-epoch v0.6.1 [INFO] [stderr] Compiling num-complex v0.1.43 [INFO] [stderr] Compiling aho-corasick v0.6.10 [INFO] [stderr] Compiling itertools-num v0.1.3 [INFO] [stderr] Compiling num-bigint v0.2.3 [INFO] [stderr] Compiling ordered-float v0.5.2 [INFO] [stderr] Compiling statrs v0.9.0 [INFO] [stderr] Compiling concurrent-hashmap v0.2.2 [INFO] [stderr] Compiling bstr v0.2.8 [INFO] [stderr] Compiling bio-types v0.5.1 [INFO] [stderr] Compiling vec_map v0.8.1 [INFO] [stderr] Compiling multimap v0.4.0 [INFO] [stderr] Compiling docopt v1.1.0 [INFO] [stderr] Compiling regex v0.2.11 [INFO] [stderr] Compiling crossbeam-deque v0.5.2 [INFO] [stderr] Compiling crossbeam-channel v0.2.6 [INFO] [stderr] Compiling env_logger v0.5.13 [INFO] [stderr] Compiling boomphf v0.5.2 [INFO] [stderr] Compiling pretty_env_logger v0.2.3 (https://github.com/k3yavi/pretty-env-logger#57963895) [INFO] [stderr] Compiling crossbeam v0.4.1 [INFO] [stderr] Compiling num v0.2.0 [INFO] [stderr] Compiling debruijn v0.3.0 (https://github.com/10XGenomics/rust-debruijn#b3d5db74) [INFO] [stderr] Compiling csv v1.1.1 [INFO] [stderr] Compiling bio v0.22.0 [INFO] [stderr] Compiling debruijn_mapping v0.2.0 (/opt/rustwide/workdir) [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/utils.rs:48:54 [INFO] [stderr] | [INFO] [stderr] 48 | fn _open_with_gz>(p: P) -> Result, Error> { [INFO] [stderr] | ^^^^^^^ help: use `dyn`: `dyn BufRead` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred [INFO] [stderr] --> src/build_index.rs:82:1 [INFO] [stderr] | [INFO] [stderr] 82 | / lazy_static! { [INFO] [stderr] 83 | | static ref PERM: Vec = { [INFO] [stderr] 84 | | let maxp = 1 << (2 * PmerType::k()); [INFO] [stderr] 85 | | let mut permutation = Vec::with_capacity(maxp); [INFO] [stderr] ... | [INFO] [stderr] 90 | | }; [INFO] [stderr] 91 | | } [INFO] [stderr] | |_^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(deprecated)]` on by default [INFO] [stderr] = note: this warning originates in a macro outside of the current crate (in Nightly builds, run with -Z external-macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 56.40s [INFO] running `"docker" "inspect" "3c0566e284de0f31c22272e172317d00bb3592b65b59af3f4a8b0ae532654b07"` [INFO] running `"docker" "rm" "-f" "3c0566e284de0f31c22272e172317d00bb3592b65b59af3f4a8b0ae532654b07"` [INFO] [stdout] 3c0566e284de0f31c22272e172317d00bb3592b65b59af3f4a8b0ae532654b07 [INFO] running `"docker" "create" "-v" "/big/crater/work/builds/worker-7/target:/opt/rustwide/target:rw,Z" "-v" "/big/crater/work/builds/worker-7/source:/opt/rustwide/workdir:ro,Z" "-v" "/big/crater/work/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/big/crater/work/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2019-09-28" "test" "--frozen" "--no-run"` [INFO] [stdout] 33f8edc2d8ce454a3b1b9541b92c46d6fb9bb41792f6b5b554f9042cc638cd8e [INFO] running `"docker" "start" "-a" "33f8edc2d8ce454a3b1b9541b92c46d6fb9bb41792f6b5b554f9042cc638cd8e"` [INFO] [stderr] Compiling debruijn_mapping v0.2.0 (/opt/rustwide/workdir) [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/utils.rs:48:54 [INFO] [stderr] | [INFO] [stderr] 48 | fn _open_with_gz>(p: P) -> Result, Error> { [INFO] [stderr] | ^^^^^^^ help: use `dyn`: `dyn BufRead` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred [INFO] [stderr] --> src/build_index.rs:82:1 [INFO] [stderr] | [INFO] [stderr] 82 | / lazy_static! { [INFO] [stderr] 83 | | static ref PERM: Vec = { [INFO] [stderr] 84 | | let maxp = 1 << (2 * PmerType::k()); [INFO] [stderr] 85 | | let mut permutation = Vec::with_capacity(maxp); [INFO] [stderr] ... | [INFO] [stderr] 90 | | }; [INFO] [stderr] 91 | | } [INFO] [stderr] | |_^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(deprecated)]` on by default [INFO] [stderr] = note: this warning originates in a macro outside of the current crate (in Nightly builds, run with -Z external-macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 9.79s [INFO] running `"docker" "inspect" "33f8edc2d8ce454a3b1b9541b92c46d6fb9bb41792f6b5b554f9042cc638cd8e"` [INFO] running `"docker" "rm" "-f" "33f8edc2d8ce454a3b1b9541b92c46d6fb9bb41792f6b5b554f9042cc638cd8e"` [INFO] [stdout] 33f8edc2d8ce454a3b1b9541b92c46d6fb9bb41792f6b5b554f9042cc638cd8e [INFO] running `"docker" "create" "-v" "/big/crater/work/builds/worker-7/target:/opt/rustwide/target:rw,Z" "-v" "/big/crater/work/builds/worker-7/source:/opt/rustwide/workdir:ro,Z" "-v" "/big/crater/work/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/big/crater/work/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2019-09-28" "test" "--frozen"` [INFO] [stdout] 92bb0b93b732f708c96ae3bde2fac30cbf982c03ac71a5ba77e9092b53b3930a [INFO] running `"docker" "start" "-a" "92bb0b93b732f708c96ae3bde2fac30cbf982c03ac71a5ba77e9092b53b3930a"` [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 0.27s [INFO] [stderr] Running /opt/rustwide/target/debug/deps/debruijn_mapping-962b1bb35a7090a8 [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] [stderr] Running /opt/rustwide/target/debug/deps/pseudoaligner-9e8bbc684f225325 [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] [stderr] Doc-tests debruijn_mapping [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] running `"docker" "inspect" "92bb0b93b732f708c96ae3bde2fac30cbf982c03ac71a5ba77e9092b53b3930a"` [INFO] running `"docker" "rm" "-f" "92bb0b93b732f708c96ae3bde2fac30cbf982c03ac71a5ba77e9092b53b3930a"` [INFO] [stdout] 92bb0b93b732f708c96ae3bde2fac30cbf982c03ac71a5ba77e9092b53b3930a