[INFO] crate ncbitaxonomy 0.1.5 is already in cache [INFO] testing ncbitaxonomy-0.1.5 against 1.38.0 for beta-1.39-1 [INFO] extracting crate ncbitaxonomy 0.1.5 into work/builds/worker-6/source [INFO] validating manifest of crates.io crate ncbitaxonomy 0.1.5 on toolchain 1.38.0 [INFO] running `"/big/crater/work/cargo-home/bin/cargo" "+1.38.0" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] started tweaking crates.io crate ncbitaxonomy 0.1.5 [INFO] finished tweaking crates.io crate ncbitaxonomy 0.1.5 [INFO] tweaked toml for crates.io crate ncbitaxonomy 0.1.5 written to work/builds/worker-6/source/Cargo.toml [INFO] running `"/big/crater/work/cargo-home/bin/cargo" "+1.38.0" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update"` [INFO] running `"/big/crater/work/cargo-home/bin/cargo" "+1.38.0" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] running `"docker" "create" "-v" "/big/crater/work/builds/worker-6/target:/opt/rustwide/target:rw,Z" "-v" "/big/crater/work/builds/worker-6/source:/opt/rustwide/workdir:ro,Z" "-v" "/big/crater/work/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/big/crater/work/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+1.38.0" "build" "--frozen"` [INFO] [stdout] 1738e6df5b02582cadca3d0bfe065b8a0d9f56b42b79c3b1c96d2a6e92bb6d8b [INFO] running `"docker" "start" "-a" "1738e6df5b02582cadca3d0bfe065b8a0d9f56b42b79c3b1c96d2a6e92bb6d8b"` [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Compiling bio v0.25.0 [INFO] [stderr] Compiling bytecount v0.3.2 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling itertools-num v0.1.3 [INFO] [stderr] Compiling ndarray v0.12.1 [INFO] [stderr] Compiling statrs v0.9.0 [INFO] [stderr] Compiling bstr v0.2.8 [INFO] [stderr] Compiling bio-types v0.5.1 [INFO] [stderr] Compiling vec_map v0.8.1 [INFO] [stderr] Compiling multimap v0.4.0 [INFO] [stderr] Compiling indextree v3.0.0 [INFO] [stderr] Compiling bv v0.10.0 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling clap v2.32.0 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling csv v1.1.1 [INFO] [stderr] Compiling ncbitaxonomy v0.1.5 (/opt/rustwide/workdir) [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/lib.rs:107:17 [INFO] [stderr] | [INFO] [stderr] 107 | let mut fields = line.split("\t|\t").collect::>(); [INFO] [stderr] | ----^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_mut)]` on by default [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/bin/taxonomy_filter_refseq.rs:74:127 [INFO] [stderr] | [INFO] [stderr] 74 | Some(name) => Box::new(File::create(name).unwrap_or_else(|_| panic!("Failed to open output file ({})", name))) as Box, [INFO] [stderr] | ^^^^^^^^^ help: use `dyn`: `dyn io::Write` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/bin/taxonomy_filter_refseq.rs:75:47 [INFO] [stderr] | [INFO] [stderr] 75 | None => Box::new(io::stdout()) as Box, [INFO] [stderr] | ^^^^^^^^^ help: use `dyn`: `dyn io::Write` [INFO] [stderr] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 18.03s [INFO] running `"docker" "inspect" "1738e6df5b02582cadca3d0bfe065b8a0d9f56b42b79c3b1c96d2a6e92bb6d8b"` [INFO] running `"docker" "rm" "-f" "1738e6df5b02582cadca3d0bfe065b8a0d9f56b42b79c3b1c96d2a6e92bb6d8b"` [INFO] [stdout] 1738e6df5b02582cadca3d0bfe065b8a0d9f56b42b79c3b1c96d2a6e92bb6d8b [INFO] running `"docker" "create" "-v" "/big/crater/work/builds/worker-6/target:/opt/rustwide/target:rw,Z" "-v" "/big/crater/work/builds/worker-6/source:/opt/rustwide/workdir:ro,Z" "-v" "/big/crater/work/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/big/crater/work/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+1.38.0" "test" "--frozen" "--no-run"` [INFO] [stdout] 8193506916ec033cfdb5b1ed951990459ec8ce90d390d07d678eb68ce380ddfe [INFO] running `"docker" "start" "-a" "8193506916ec033cfdb5b1ed951990459ec8ce90d390d07d678eb68ce380ddfe"` [INFO] [stderr] Compiling ncbitaxonomy v0.1.5 (/opt/rustwide/workdir) [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/lib.rs:107:17 [INFO] [stderr] | [INFO] [stderr] 107 | let mut fields = line.split("\t|\t").collect::>(); [INFO] [stderr] | ----^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_mut)]` on by default [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/bin/taxonomy_filter_refseq.rs:74:127 [INFO] [stderr] | [INFO] [stderr] 74 | Some(name) => Box::new(File::create(name).unwrap_or_else(|_| panic!("Failed to open output file ({})", name))) as Box, [INFO] [stderr] | ^^^^^^^^^ help: use `dyn`: `dyn io::Write` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/bin/taxonomy_filter_refseq.rs:75:47 [INFO] [stderr] | [INFO] [stderr] 75 | None => Box::new(io::stdout()) as Box, [INFO] [stderr] | ^^^^^^^^^ help: use `dyn`: `dyn io::Write` [INFO] [stderr] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 1.22s [INFO] running `"docker" "inspect" "8193506916ec033cfdb5b1ed951990459ec8ce90d390d07d678eb68ce380ddfe"` [INFO] running `"docker" "rm" "-f" "8193506916ec033cfdb5b1ed951990459ec8ce90d390d07d678eb68ce380ddfe"` [INFO] [stdout] 8193506916ec033cfdb5b1ed951990459ec8ce90d390d07d678eb68ce380ddfe [INFO] running `"docker" "create" "-v" "/big/crater/work/builds/worker-6/target:/opt/rustwide/target:rw,Z" "-v" "/big/crater/work/builds/worker-6/source:/opt/rustwide/workdir:ro,Z" "-v" "/big/crater/work/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/big/crater/work/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+1.38.0" "test" "--frozen"` [INFO] [stdout] f449b490a3bfcf9a692dd9a275b4c7d8cf3bf9bb401209825d7a0d8ae618bc88 [INFO] running `"docker" "start" "-a" "f449b490a3bfcf9a692dd9a275b4c7d8cf3bf9bb401209825d7a0d8ae618bc88"` [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 0.04s [INFO] [stderr] Running /opt/rustwide/target/debug/deps/ncbitaxonomy-5237cee20f3ca572 [INFO] [stdout] [INFO] [stdout] running 7 tests [INFO] [stdout] test tests::contains_name ... ok [INFO] [stdout] test tests::descendants ... ok [INFO] [stdout] test tests::get_id_by_node ... ok [INFO] [stdout] test tests::get_name_by_id ... ok [INFO] [stdout] test tests::get_node_by_id ... ok [INFO] [stdout] test tests::contains_id ... ok [INFO] [stdout] test tests::traversal ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 7 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] [stderr] Running /opt/rustwide/target/debug/deps/taxonomy_filter_refseq-7397bcedcee09739 [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] [stderr] Doc-tests ncbitaxonomy [INFO] [stdout] [INFO] [stdout] running 1 test [INFO] [stdout] test src/lib.rs - NcbiTaxonomy::from_ncbi_files (line 49) ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 1 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] running `"docker" "inspect" "f449b490a3bfcf9a692dd9a275b4c7d8cf3bf9bb401209825d7a0d8ae618bc88"` [INFO] running `"docker" "rm" "-f" "f449b490a3bfcf9a692dd9a275b4c7d8cf3bf9bb401209825d7a0d8ae618bc88"` [INFO] [stdout] f449b490a3bfcf9a692dd9a275b4c7d8cf3bf9bb401209825d7a0d8ae618bc88