[INFO] updating cached repository https://github.com/zaeleus/noodles-fpkm [INFO] running `"git" "-c" "credential.helper=" "-c" "credential.helper=/big/crater/work/cargo-home/bin/git-credential-null" "-c" "remote.origin.fetch=refs/heads/*:refs/heads/*" "fetch" "origin" "--force" "--prune"` [INFO] running `"git" "rev-parse" "HEAD"` [INFO] [stdout] 66c9a1f4b1569a0a7dcbc3ec46258124972e424f [INFO] testing zaeleus/noodles-fpkm against 1.38.0 for beta-1.39-1 [INFO] running `"git" "clone" "work/cache/git-repos/https%3A%2F%2Fgithub.com%2Fzaeleus%2Fnoodles-fpkm" "work/builds/worker-0/source"` [INFO] [stderr] Cloning into 'work/builds/worker-0/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/zaeleus/noodles-fpkm on toolchain 1.38.0 [INFO] running `"/big/crater/work/cargo-home/bin/cargo" "+1.38.0" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] started tweaking git repo https://github.com/zaeleus/noodles-fpkm [INFO] finished tweaking git repo https://github.com/zaeleus/noodles-fpkm [INFO] tweaked toml for git repo https://github.com/zaeleus/noodles-fpkm written to work/builds/worker-0/source/Cargo.toml [INFO] crate git repo https://github.com/zaeleus/noodles-fpkm already has a lockfile, it will not be regenerated [INFO] running `"/big/crater/work/cargo-home/bin/cargo" "+1.38.0" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] running `"docker" "create" "-v" "/big/crater/work/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/big/crater/work/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/big/crater/work/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/big/crater/work/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+1.38.0" "build" "--frozen"` [INFO] [stdout] 4ad966ea8ccbf8120cbf5371263eb9064f031f962bd8192b1a3c6cf9ae5b4973 [INFO] running `"docker" "start" "-a" "4ad966ea8ccbf8120cbf5371263eb9064f031f962bd8192b1a3c6cf9ae5b4973"` [INFO] [stderr] Compiling libc v0.2.60 [INFO] [stderr] Compiling regex v1.1.9 [INFO] [stderr] Compiling log v0.4.7 [INFO] [stderr] Compiling termcolor v1.0.5 [INFO] [stderr] Compiling miniz-sys v0.1.12 [INFO] [stderr] Compiling regex-syntax v0.6.8 [INFO] [stderr] Compiling humantime v1.2.0 [INFO] [stderr] Compiling textwrap v0.11.0 [INFO] [stderr] Compiling crc32fast v1.2.0 [INFO] [stderr] Compiling regex-automata v0.1.7 [INFO] [stderr] Compiling memchr v2.2.1 [INFO] [stderr] Compiling atty v0.2.12 [INFO] [stderr] Compiling clap v2.33.0 [INFO] [stderr] Compiling flate2 v1.0.9 [INFO] [stderr] Compiling bstr v0.2.2 [INFO] [stderr] Compiling aho-corasick v0.7.4 [INFO] [stderr] Compiling csv-core v0.1.6 [INFO] [stderr] Compiling csv v1.1.1 [INFO] [stderr] Compiling noodles v0.1.0 (https://github.com/zaeleus/noodles.git#29afcb40) [INFO] [stderr] Compiling env_logger v0.6.2 [INFO] [stderr] Compiling noodles-fpkm v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 32.34s [INFO] running `"docker" "inspect" "4ad966ea8ccbf8120cbf5371263eb9064f031f962bd8192b1a3c6cf9ae5b4973"` [INFO] running `"docker" "rm" "-f" "4ad966ea8ccbf8120cbf5371263eb9064f031f962bd8192b1a3c6cf9ae5b4973"` [INFO] [stdout] 4ad966ea8ccbf8120cbf5371263eb9064f031f962bd8192b1a3c6cf9ae5b4973 [INFO] running `"docker" "create" "-v" "/big/crater/work/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/big/crater/work/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/big/crater/work/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/big/crater/work/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+1.38.0" "test" "--frozen" "--no-run"` [INFO] [stdout] fbe4e73c5481d4fe2fa15d7d6a5b4f127a07ca0aeba2fe2ecc0414efd4a3cf7f [INFO] running `"docker" "start" "-a" "fbe4e73c5481d4fe2fa15d7d6a5b4f127a07ca0aeba2fe2ecc0414efd4a3cf7f"` [INFO] [stderr] Compiling noodles-fpkm v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 5.56s [INFO] running `"docker" "inspect" "fbe4e73c5481d4fe2fa15d7d6a5b4f127a07ca0aeba2fe2ecc0414efd4a3cf7f"` [INFO] running `"docker" "rm" "-f" "fbe4e73c5481d4fe2fa15d7d6a5b4f127a07ca0aeba2fe2ecc0414efd4a3cf7f"` [INFO] [stdout] fbe4e73c5481d4fe2fa15d7d6a5b4f127a07ca0aeba2fe2ecc0414efd4a3cf7f [INFO] running `"docker" "create" "-v" "/big/crater/work/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/big/crater/work/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/big/crater/work/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/big/crater/work/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+1.38.0" "test" "--frozen"` [INFO] [stdout] dc26bea998368ff70833553d305ed6dae7ada5f9e8cdded48c0a9acac864fe75 [INFO] running `"docker" "start" "-a" "dc26bea998368ff70833553d305ed6dae7ada5f9e8cdded48c0a9acac864fe75"` [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 0.03s [INFO] [stderr] Running /opt/rustwide/target/debug/deps/noodles_fpkm-c5735f5fb8c195d8 [INFO] [stdout] [INFO] [stdout] running 10 tests [INFO] [stdout] test counts::tests::test_parse_count ... ok [INFO] [stdout] test counts::tests::test_insert_count ... ok [INFO] [stdout] test counts::tests::test_parse_name ... ok [INFO] [stdout] test tests::test_calculate_fpkm ... ok [INFO] [stdout] test tests::test_calculate_fpkms ... ok [INFO] [stdout] test tests::test_sum_nonoverlapping_interval_lengths ... ok [INFO] [stdout] test tests::test_calculate_fpkms_is_ordered_by_feature_id ... ok [INFO] [stdout] test tests::test_calculate_fpkms_with_missing_feature ... ok [INFO] [stdout] test tests::test_calculate_tpm ... ok [INFO] [stdout] test counts::tests::test_read_counts_with_duplicate_identifiers ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 10 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] [stderr] Running /opt/rustwide/target/debug/deps/noodles_fpkm-1dcfb40789e0ba06 [INFO] [stdout] [INFO] [stdout] running 1 test [INFO] [stdout] test tests::test_write_expressions ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 1 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] [stderr] Doc-tests noodles-fpkm [INFO] [stdout] [INFO] [stdout] running 5 tests [INFO] [stdout] test src/counts.rs - counts::sum_counts (line 109) ... ok [INFO] [stdout] test src/counts.rs - counts::read_counts (line 28) ... ok [INFO] [stdout] test src/features.rs - features::Feature::len (line 23) ... ok [INFO] [stdout] test src/features.rs - features::read_features (line 103) ... ok [INFO] [stdout] test src/features.rs - features::merge_intervals (line 56) ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 5 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] running `"docker" "inspect" "dc26bea998368ff70833553d305ed6dae7ada5f9e8cdded48c0a9acac864fe75"` [INFO] running `"docker" "rm" "-f" "dc26bea998368ff70833553d305ed6dae7ada5f9e8cdded48c0a9acac864fe75"` [INFO] [stdout] dc26bea998368ff70833553d305ed6dae7ada5f9e8cdded48c0a9acac864fe75