[INFO] updating cached repository https://github.com/TuBieJun/stat_mut_sampleratio [INFO] running `"git" "-c" "credential.helper=" "-c" "credential.helper=/big/crater/work/cargo-home/bin/git-credential-null" "-c" "remote.origin.fetch=refs/heads/*:refs/heads/*" "fetch" "origin" "--force" "--prune"` [INFO] running `"git" "rev-parse" "HEAD"` [INFO] [stdout] 0163827d32c94da365c78519e8ce537f7b7a211c [INFO] testing TuBieJun/stat_mut_sampleratio against 1.38.0 for beta-1.39-1 [INFO] running `"git" "clone" "work/cache/git-repos/https%3A%2F%2Fgithub.com%2FTuBieJun%2Fstat_mut_sampleratio" "work/builds/worker-10/source"` [INFO] [stderr] Cloning into 'work/builds/worker-10/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/TuBieJun/stat_mut_sampleratio on toolchain 1.38.0 [INFO] running `"/big/crater/work/cargo-home/bin/cargo" "+1.38.0" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] started tweaking git repo https://github.com/TuBieJun/stat_mut_sampleratio [INFO] finished tweaking git repo https://github.com/TuBieJun/stat_mut_sampleratio [INFO] tweaked toml for git repo https://github.com/TuBieJun/stat_mut_sampleratio written to work/builds/worker-10/source/Cargo.toml [INFO] crate git repo https://github.com/TuBieJun/stat_mut_sampleratio already has a lockfile, it will not be regenerated [INFO] running `"/big/crater/work/cargo-home/bin/cargo" "+1.38.0" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] running `"docker" "create" "-v" "/big/crater/work/builds/worker-10/target:/opt/rustwide/target:rw,Z" "-v" "/big/crater/work/builds/worker-10/source:/opt/rustwide/workdir:ro,Z" "-v" "/big/crater/work/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/big/crater/work/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+1.38.0" "build" "--frozen"` [INFO] [stdout] 0125e21fcccc34f0207cce7a643e0a01be9c913e617e8426abeaca0698453226 [INFO] running `"docker" "start" "-a" "0125e21fcccc34f0207cce7a643e0a01be9c913e617e8426abeaca0698453226"` [INFO] [stderr] Compiling atty v0.2.6 [INFO] [stderr] Compiling clap v2.29.2 [INFO] [stderr] Compiling stat_germline_pos v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] warning: unused import: `SubCommand` [INFO] [stderr] --> src/main.rs:9:22 [INFO] [stderr] | [INFO] [stderr] 9 | use clap::{Arg, App, SubCommand}; [INFO] [stderr] | ^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_imports)]` on by default [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:18:9 [INFO] [stderr] | [INFO] [stderr] 18 | let mut f = File::open(vcf_l) [INFO] [stderr] | ----^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_mut)]` on by default [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:40:21 [INFO] [stderr] | [INFO] [stderr] 40 | let mut dp_info:Vec<&str>; [INFO] [stderr] | ----^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:58:25 [INFO] [stderr] | [INFO] [stderr] 58 | let mut n_index:usize; [INFO] [stderr] | ----^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: variable `D_germline` should have a snake case name [INFO] [stderr] --> src/main.rs:13:13 [INFO] [stderr] | [INFO] [stderr] 13 | D_germline:&mut HashMap>) -> u32 { [INFO] [stderr] | ^^^^^^^^^^ help: convert the identifier to snake case: `d_germline` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(non_snake_case)]` on by default [INFO] [stderr] [INFO] [stderr] warning: variable `D_germline` should have a snake case name [INFO] [stderr] --> src/main.rs:96:53 [INFO] [stderr] | [INFO] [stderr] 96 | fn out_info(out_file:&str, panel_list:&Vec, D_germline:&HashMap>, sample_num_list:&Vec) { [INFO] [stderr] | ^^^^^^^^^^ help: convert the identifier to snake case: `d_germline` [INFO] [stderr] [INFO] [stderr] warning: unused `std::result::Result` that must be used [INFO] [stderr] --> src/main.rs:100:5 [INFO] [stderr] | [INFO] [stderr] 100 | writer.write(header.as_bytes()); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_must_use)]` on by default [INFO] [stderr] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stderr] [INFO] [stderr] warning: unused `std::result::Result` that must be used [INFO] [stderr] --> src/main.rs:112:9 [INFO] [stderr] | [INFO] [stderr] 112 | writer.write(info.as_bytes()); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stderr] [INFO] [stderr] warning: variable `D_germline` should have a snake case name [INFO] [stderr] --> src/main.rs:155:13 [INFO] [stderr] | [INFO] [stderr] 155 | let mut D_germline:HashMap> = HashMap::new(); [INFO] [stderr] | ^^^^^^^^^^ help: convert the identifier to snake case: `d_germline` [INFO] [stderr] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 11.86s [INFO] running `"docker" "inspect" "0125e21fcccc34f0207cce7a643e0a01be9c913e617e8426abeaca0698453226"` [INFO] running `"docker" "rm" "-f" "0125e21fcccc34f0207cce7a643e0a01be9c913e617e8426abeaca0698453226"` [INFO] [stdout] 0125e21fcccc34f0207cce7a643e0a01be9c913e617e8426abeaca0698453226 [INFO] running `"docker" "create" "-v" "/big/crater/work/builds/worker-10/target:/opt/rustwide/target:rw,Z" "-v" "/big/crater/work/builds/worker-10/source:/opt/rustwide/workdir:ro,Z" "-v" "/big/crater/work/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/big/crater/work/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+1.38.0" "test" "--frozen" "--no-run"` [INFO] [stdout] 10f19dd87a61adcc8b1780b8a95f72343e5e08188f151923cf49ccc6a022c178 [INFO] running `"docker" "start" "-a" "10f19dd87a61adcc8b1780b8a95f72343e5e08188f151923cf49ccc6a022c178"` [INFO] [stderr] Compiling stat_germline_pos v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] warning: unused import: `SubCommand` [INFO] [stderr] --> src/main.rs:9:22 [INFO] [stderr] | [INFO] [stderr] 9 | use clap::{Arg, App, SubCommand}; [INFO] [stderr] | ^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_imports)]` on by default [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:18:9 [INFO] [stderr] | [INFO] [stderr] 18 | let mut f = File::open(vcf_l) [INFO] [stderr] | ----^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_mut)]` on by default [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:40:21 [INFO] [stderr] | [INFO] [stderr] 40 | let mut dp_info:Vec<&str>; [INFO] [stderr] | ----^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:58:25 [INFO] [stderr] | [INFO] [stderr] 58 | let mut n_index:usize; [INFO] [stderr] | ----^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: variable `D_germline` should have a snake case name [INFO] [stderr] --> src/main.rs:13:13 [INFO] [stderr] | [INFO] [stderr] 13 | D_germline:&mut HashMap>) -> u32 { [INFO] [stderr] | ^^^^^^^^^^ help: convert the identifier to snake case: `d_germline` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(non_snake_case)]` on by default [INFO] [stderr] [INFO] [stderr] warning: variable `D_germline` should have a snake case name [INFO] [stderr] --> src/main.rs:96:53 [INFO] [stderr] | [INFO] [stderr] 96 | fn out_info(out_file:&str, panel_list:&Vec, D_germline:&HashMap>, sample_num_list:&Vec) { [INFO] [stderr] | ^^^^^^^^^^ help: convert the identifier to snake case: `d_germline` [INFO] [stderr] [INFO] [stderr] warning: unused `std::result::Result` that must be used [INFO] [stderr] --> src/main.rs:100:5 [INFO] [stderr] | [INFO] [stderr] 100 | writer.write(header.as_bytes()); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_must_use)]` on by default [INFO] [stderr] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stderr] [INFO] [stderr] warning: unused `std::result::Result` that must be used [INFO] [stderr] --> src/main.rs:112:9 [INFO] [stderr] | [INFO] [stderr] 112 | writer.write(info.as_bytes()); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stderr] [INFO] [stderr] warning: variable `D_germline` should have a snake case name [INFO] [stderr] --> src/main.rs:155:13 [INFO] [stderr] | [INFO] [stderr] 155 | let mut D_germline:HashMap> = HashMap::new(); [INFO] [stderr] | ^^^^^^^^^^ help: convert the identifier to snake case: `d_germline` [INFO] [stderr] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 0.34s [INFO] running `"docker" "inspect" "10f19dd87a61adcc8b1780b8a95f72343e5e08188f151923cf49ccc6a022c178"` [INFO] running `"docker" "rm" "-f" "10f19dd87a61adcc8b1780b8a95f72343e5e08188f151923cf49ccc6a022c178"` [INFO] [stdout] 10f19dd87a61adcc8b1780b8a95f72343e5e08188f151923cf49ccc6a022c178 [INFO] running `"docker" "create" "-v" "/big/crater/work/builds/worker-10/target:/opt/rustwide/target:rw,Z" "-v" "/big/crater/work/builds/worker-10/source:/opt/rustwide/workdir:ro,Z" "-v" "/big/crater/work/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/big/crater/work/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+1.38.0" "test" "--frozen"` [INFO] [stdout] c16af95846c47259d9c0900b8c2e0aa6247582c3176a28b133bcfa6c5255e400 [INFO] running `"docker" "start" "-a" "c16af95846c47259d9c0900b8c2e0aa6247582c3176a28b133bcfa6c5255e400"` [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 0.01s [INFO] [stderr] Running /opt/rustwide/target/debug/deps/stat_germline_pos-69980627b71795f7 [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] running `"docker" "inspect" "c16af95846c47259d9c0900b8c2e0aa6247582c3176a28b133bcfa6c5255e400"` [INFO] running `"docker" "rm" "-f" "c16af95846c47259d9c0900b8c2e0aa6247582c3176a28b133bcfa6c5255e400"` [INFO] [stdout] c16af95846c47259d9c0900b8c2e0aa6247582c3176a28b133bcfa6c5255e400