[INFO] updating cached repository https://github.com/Helkafen/vcf_pwm [INFO] running `"git" "-c" "credential.helper=" "-c" "credential.helper=/big/crater/work/cargo-home/bin/git-credential-null" "-c" "remote.origin.fetch=refs/heads/*:refs/heads/*" "fetch" "origin" "--force" "--prune"` [INFO] running `"git" "rev-parse" "HEAD"` [INFO] [stdout] a811e4e20225804cf9f0bd3d52f9435ae40fd233 [INFO] testing Helkafen/vcf_pwm against 1.38.0 for beta-1.39-1 [INFO] running `"git" "clone" "work/cache/git-repos/https%3A%2F%2Fgithub.com%2FHelkafen%2Fvcf_pwm" "work/builds/worker-9/source"` [INFO] [stderr] Cloning into 'work/builds/worker-9/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/Helkafen/vcf_pwm on toolchain 1.38.0 [INFO] running `"/big/crater/work/cargo-home/bin/cargo" "+1.38.0" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] started tweaking git repo https://github.com/Helkafen/vcf_pwm [INFO] finished tweaking git repo https://github.com/Helkafen/vcf_pwm [INFO] tweaked toml for git repo https://github.com/Helkafen/vcf_pwm written to work/builds/worker-9/source/Cargo.toml [INFO] crate git repo https://github.com/Helkafen/vcf_pwm already has a lockfile, it will not be regenerated [INFO] running `"/big/crater/work/cargo-home/bin/cargo" "+1.38.0" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `"docker" "create" "-v" "/big/crater/work/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/big/crater/work/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/big/crater/work/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/big/crater/work/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+1.38.0" "build" "--frozen"` [INFO] [stdout] 661f2e39ad60ed4e1696af5037b2f434eb08a9e8ede220c1e6844baa028c15ab [INFO] running `"docker" "start" "-a" "661f2e39ad60ed4e1696af5037b2f434eb08a9e8ede220c1e6844baa028c15ab"` [INFO] [stderr] Compiling bindgen v0.50.0 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Compiling bio v0.28.2 [INFO] [stderr] Compiling ieee754 v0.2.6 [INFO] [stderr] Compiling strum v0.13.0 [INFO] [stderr] Compiling linear-map v1.2.0 [INFO] [stderr] Compiling bzip2-sys v0.1.7 [INFO] [stderr] Compiling num-complex v0.2.3 [INFO] [stderr] Compiling fs-utils v1.1.1 [INFO] [stderr] Compiling lzma-sys v0.1.14 [INFO] [stderr] Compiling memchr v2.2.1 [INFO] [stderr] Compiling atty v0.2.11 [INFO] [stderr] Compiling subprocess v0.1.18 [INFO] [stderr] Compiling crossbeam-epoch v0.7.1 [INFO] [stderr] Compiling regex-automata v0.1.7 [INFO] [stderr] Compiling miniz-sys v0.1.12 [INFO] [stderr] Compiling libz-sys v1.0.25 [INFO] [stderr] Compiling syn v0.15.39 [INFO] [stderr] Compiling clang-sys v0.28.0 [INFO] [stderr] Compiling itertools-num v0.1.3 [INFO] [stderr] Compiling flate2 v1.0.9 [INFO] [stderr] Compiling failure v0.1.5 [INFO] [stderr] Compiling statrs v0.9.0 [INFO] [stderr] Compiling aho-corasick v0.7.4 [INFO] [stderr] Compiling nom v4.2.3 [INFO] [stderr] Compiling csv-core v0.1.6 [INFO] [stderr] Compiling crossbeam-deque v0.7.1 [INFO] [stderr] Compiling bv v0.10.0 [INFO] [stderr] Compiling which v2.0.1 [INFO] [stderr] Compiling bgzip v0.0.3 [INFO] [stderr] Compiling rayon-core v1.6.0 [INFO] [stderr] Compiling regex v1.1.9 [INFO] [stderr] Compiling ndarray v0.12.1 [INFO] [stderr] Compiling cexpr v0.3.5 [INFO] [stderr] Compiling rayon v1.2.0 [INFO] [stderr] Compiling env_logger v0.6.2 [INFO] [stderr] Compiling serde_derive v1.0.94 [INFO] [stderr] Compiling strum_macros v0.13.0 [INFO] [stderr] Compiling serde v1.0.94 [INFO] [stderr] Compiling vec_map v0.8.1 [INFO] [stderr] Compiling bstr v0.2.1 [INFO] [stderr] Compiling multimap v0.4.0 [INFO] [stderr] Compiling bio-types v0.5.1 [INFO] [stderr] Compiling clap v2.33.0 [INFO] [stderr] Compiling csv v1.1.1 [INFO] [stderr] Compiling rust-htslib v0.24.0 [INFO] [stderr] Compiling vcf_pwm v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 2m 01s [INFO] running `"docker" "inspect" "661f2e39ad60ed4e1696af5037b2f434eb08a9e8ede220c1e6844baa028c15ab"` [INFO] running `"docker" "rm" "-f" "661f2e39ad60ed4e1696af5037b2f434eb08a9e8ede220c1e6844baa028c15ab"` [INFO] [stdout] 661f2e39ad60ed4e1696af5037b2f434eb08a9e8ede220c1e6844baa028c15ab [INFO] running `"docker" "create" "-v" "/big/crater/work/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/big/crater/work/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/big/crater/work/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/big/crater/work/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+1.38.0" "test" "--frozen" "--no-run"` [INFO] [stdout] fcfcf16fc96dad55405a343a94570c19a9468f01f33c0e038925655d458b0ed7 [INFO] running `"docker" "start" "-a" "fcfcf16fc96dad55405a343a94570c19a9468f01f33c0e038925655d458b0ed7"` [INFO] [stderr] Compiling rand_xoshiro v0.1.0 [INFO] [stderr] Compiling criterion-plot v0.3.1 [INFO] [stderr] Compiling serde_json v1.0.40 [INFO] [stderr] Compiling tinytemplate v1.0.2 [INFO] [stderr] Compiling criterion v0.2.11 [INFO] [stderr] Compiling vcf_pwm v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 13.71s [INFO] running `"docker" "inspect" "fcfcf16fc96dad55405a343a94570c19a9468f01f33c0e038925655d458b0ed7"` [INFO] running `"docker" "rm" "-f" "fcfcf16fc96dad55405a343a94570c19a9468f01f33c0e038925655d458b0ed7"` [INFO] [stdout] fcfcf16fc96dad55405a343a94570c19a9468f01f33c0e038925655d458b0ed7 [INFO] running `"docker" "create" "-v" "/big/crater/work/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/big/crater/work/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/big/crater/work/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/big/crater/work/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+1.38.0" "test" "--frozen"` [INFO] [stdout] 4b36c3b214a23d200bb6880f509fa6c9732f9d4cc0eae741437c70d5052d11a8 [INFO] running `"docker" "start" "-a" "4b36c3b214a23d200bb6880f509fa6c9732f9d4cc0eae741437c70d5052d11a8"` [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 0.13s [INFO] [stderr] Running /opt/rustwide/target/debug/deps/vcf_pwm-e9542b48acd78267 [INFO] [stdout] [INFO] [stdout] running 9 tests [INFO] [stdout] test tests::it_works ... ok [INFO] [stdout] test tests::test_match_gataa ... ok [INFO] [stdout] test tests::test_matches ... ok [INFO] [stdout] test tests::test_patch_haplotype_one_deletion ... ok [INFO] [stdout] test tests::test_patch_haplotype_one_insert ... ok [INFO] [stdout] test tests::test_patch_haplotype_two_snp ... ok [INFO] [stdout] test tests::test_patch_haplotype_one_snp ... ok [INFO] [stdout] test tests::test_patch_haplotype_with_no_diff ... ok [INFO] [stdout] test tests::test_parse_pwm_files ... FAILED [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] [INFO] [stdout] ---- tests::test_parse_pwm_files stdout ---- [INFO] [stdout] thread 'tests::test_parse_pwm_files' panicked at 'Could not open file: Os { code: 2, kind: NotFound, message: "No such file or directory" }', src/libcore/result.rs:1084:5 [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x556735c528cb - backtrace::backtrace::libunwind::trace::h89fcc71e59e3bc5b [INFO] [stdout] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.34/src/backtrace/libunwind.rs:88 [INFO] [stdout] 1: 0x556735c528cb - backtrace::backtrace::trace_unsynchronized::h0bad9be1379e729a [INFO] [stdout] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.34/src/backtrace/mod.rs:66 [INFO] [stdout] 2: 0x556735c528cb - std::sys_common::backtrace::_print::hd3382a1f33c473da [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:47 [INFO] [stdout] 3: 0x556735c528cb - std::sys_common::backtrace::print::h0ec6f03cfb8e76a6 [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:36 [INFO] [stdout] 4: 0x556735c528cb - std::panicking::default_hook::{{closure}}::h96cbf7b454e3f557 [INFO] [stdout] at src/libstd/panicking.rs:200 [INFO] [stdout] 5: 0x556735c5253c - std::panicking::default_hook::h95a8f00337383d83 [INFO] [stdout] at src/libstd/panicking.rs:211 [INFO] [stdout] 6: 0x556735c5303d - std::panicking::rust_panic_with_hook::h92f98b46e22f14ed [INFO] [stdout] at src/libstd/panicking.rs:477 [INFO] [stdout] 7: 0x556735c52bc2 - std::panicking::continue_panic_fmt::h25abfbb4e5b7043a [INFO] [stdout] at src/libstd/panicking.rs:384 [INFO] [stdout] 8: 0x556735c52aa6 - rust_begin_unwind [INFO] [stdout] at src/libstd/panicking.rs:311 [INFO] [stdout] 9: 0x556735c699ad - core::panicking::panic_fmt::h7e9f94035af782b3 [INFO] [stdout] at src/libcore/panicking.rs:85 [INFO] [stdout] 10: 0x556735c69aa7 - core::result::unwrap_failed::hf7591c1dd9412006 [INFO] [stdout] at src/libcore/result.rs:1084 [INFO] [stdout] 11: 0x556735bde1e8 - core::result::Result::expect::h9b1718e2f6682155 [INFO] [stdout] at /rustc/625451e376bb2e5283fc4741caa0a3e8a2ca4d54/src/libcore/result.rs:879 [INFO] [stdout] 12: 0x556735bdbd38 - vcf_pwm::pattern::read_lines::hcb2ebf3ae935c595 [INFO] [stdout] at src/pattern.rs:84 [INFO] [stdout] 13: 0x556735bda1f6 - vcf_pwm::pattern::parse_pwm_files::h41a028ec41a7ea33 [INFO] [stdout] at src/pattern.rs:20 [INFO] [stdout] 14: 0x556735baacc4 - vcf_pwm::tests::test_parse_pwm_files::h59d062650f378edc [INFO] [stdout] at src/main.rs:483 [INFO] [stdout] 15: 0x556735baab8a - vcf_pwm::tests::test_parse_pwm_files::{{closure}}::h94ec823d97d92ecb [INFO] [stdout] at src/main.rs:482 [INFO] [stdout] 16: 0x556735bbedfe - core::ops::function::FnOnce::call_once::h3a17111298049b23 [INFO] [stdout] at /rustc/625451e376bb2e5283fc4741caa0a3e8a2ca4d54/src/libcore/ops/function.rs:235 [INFO] [stdout] 17: 0x556735bec29f - as core::ops::function::FnOnce>::call_once::hac0fbe2754f8bd24 [INFO] [stdout] at /rustc/625451e376bb2e5283fc4741caa0a3e8a2ca4d54/src/liballoc/boxed.rs:787 [INFO] [stdout] 18: 0x556735c557ba - __rust_maybe_catch_panic [INFO] [stdout] at src/libpanic_unwind/lib.rs:80 [INFO] [stdout] 19: 0x556735c0688e - std::panicking::try::h9d6938917cc05e3f [INFO] [stdout] at /rustc/625451e376bb2e5283fc4741caa0a3e8a2ca4d54/src/libstd/panicking.rs:275 [INFO] [stdout] 20: 0x556735c0688e - std::panic::catch_unwind::h5be70fd1d69515b0 [INFO] [stdout] at /rustc/625451e376bb2e5283fc4741caa0a3e8a2ca4d54/src/libstd/panic.rs:394 [INFO] [stdout] 21: 0x556735c0688e - test::run_test::run_test_inner::{{closure}}::h056f206eafd8ff6e [INFO] [stdout] at src/libtest/lib.rs:1408 [INFO] [stdout] 22: 0x556735be1cc5 - std::sys_common::backtrace::__rust_begin_short_backtrace::h859abbc742a34b19 [INFO] [stdout] at /rustc/625451e376bb2e5283fc4741caa0a3e8a2ca4d54/src/libstd/sys_common/backtrace.rs:77 [INFO] [stdout] 23: 0x556735be5e05 - std::thread::Builder::spawn_unchecked::{{closure}}::{{closure}}::hf8192ec938c43694 [INFO] [stdout] at /rustc/625451e376bb2e5283fc4741caa0a3e8a2ca4d54/src/libstd/thread/mod.rs:470 [INFO] [stdout] 24: 0x556735be5e05 - as core::ops::function::FnOnce<()>>::call_once::hae7b2431555cb4db [INFO] [stdout] at /rustc/625451e376bb2e5283fc4741caa0a3e8a2ca4d54/src/libstd/panic.rs:315 [INFO] [stdout] 25: 0x556735be5e05 - std::panicking::try::do_call::h6da7ecd0783259d7 [INFO] [stdout] at /rustc/625451e376bb2e5283fc4741caa0a3e8a2ca4d54/src/libstd/panicking.rs:296 [INFO] [stdout] 26: 0x556735c557ba - __rust_maybe_catch_panic [INFO] [stdout] at src/libpanic_unwind/lib.rs:80 [INFO] [stdout] 27: 0x556735be63e2 - std::panicking::try::h3c1c35414c2c78f1 [INFO] [stdout] at /rustc/625451e376bb2e5283fc4741caa0a3e8a2ca4d54/src/libstd/panicking.rs:275 [INFO] [stdout] 28: 0x556735be63e2 - std::panic::catch_unwind::ha5cfb2018fda983e [INFO] [stdout] at /rustc/625451e376bb2e5283fc4741caa0a3e8a2ca4d54/src/libstd/panic.rs:394 [INFO] [stdout] 29: 0x556735be63e2 - std::thread::Builder::spawn_unchecked::{{closure}}::hc7620e41f0938c09 [INFO] [stdout] at /rustc/625451e376bb2e5283fc4741caa0a3e8a2ca4d54/src/libstd/thread/mod.rs:469 [INFO] [stdout] 30: 0x556735be63e2 - core::ops::function::FnOnce::call_once{{vtable.shim}}::h1b3b20eeb6ea6ddd [INFO] [stdout] at /rustc/625451e376bb2e5283fc4741caa0a3e8a2ca4d54/src/libcore/ops/function.rs:235 [INFO] [stdout] 31: 0x556735c4858f - as core::ops::function::FnOnce>::call_once::h2877b2aefb0fd627 [INFO] [stdout] at /rustc/625451e376bb2e5283fc4741caa0a3e8a2ca4d54/src/liballoc/boxed.rs:787 [INFO] [stdout] 32: 0x556735c54ef0 - as core::ops::function::FnOnce>::call_once::h13f473dbcdaa0fef [INFO] [stdout] at /rustc/625451e376bb2e5283fc4741caa0a3e8a2ca4d54/src/liballoc/boxed.rs:787 [INFO] [stdout] 33: 0x556735c54ef0 - std::sys_common::thread::start_thread::h562a7c4953cb1d31 [INFO] [stdout] at src/libstd/sys_common/thread.rs:13 [INFO] [stdout] 34: 0x556735c54ef0 - std::sys::unix::thread::Thread::new::thread_start::h382c6ae14181d163 [INFO] [stdout] at src/libstd/sys/unix/thread.rs:79 [INFO] [stdout] 35: 0x7fe27973f6db - start_thread [INFO] [stdout] 36: 0x7fe27925088f - __clone [INFO] [stdout] 37: 0x0 - [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] tests::test_parse_pwm_files [INFO] [stdout] [INFO] [stdout] test result: FAILED. 8 passed; 1 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] [stderr] error: test failed, to rerun pass '--bin vcf_pwm' [INFO] running `"docker" "inspect" "4b36c3b214a23d200bb6880f509fa6c9732f9d4cc0eae741437c70d5052d11a8"` [INFO] running `"docker" "rm" "-f" "4b36c3b214a23d200bb6880f509fa6c9732f9d4cc0eae741437c70d5052d11a8"` [INFO] [stdout] 4b36c3b214a23d200bb6880f509fa6c9732f9d4cc0eae741437c70d5052d11a8