[INFO] crate smafa 0.5.0 is already in cache
[INFO] extracting crate smafa 0.5.0 into work/ex/beta-1.38-1/sources/1.37.0/reg/smafa/0.5.0
[INFO] extracting crate smafa 0.5.0 into work/ex/beta-1.38-1/sources/beta-2019-08-13/reg/smafa/0.5.0
[INFO] validating manifest of smafa-0.5.0 on toolchain 1.37.0
[INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+1.37.0" "read-manifest" "--manifest-path" "Cargo.toml"`
[INFO] validating manifest of smafa-0.5.0 on toolchain beta-2019-08-13
[INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+beta-2019-08-13" "read-manifest" "--manifest-path" "Cargo.toml"`
[INFO] started frobbing smafa-0.5.0
[INFO] finished frobbing smafa-0.5.0
[INFO] frobbed toml for smafa-0.5.0 written to work/ex/beta-1.38-1/sources/1.37.0/reg/smafa/0.5.0/Cargo.toml
[INFO] started frobbing smafa-0.5.0
[INFO] finished frobbing smafa-0.5.0
[INFO] frobbed toml for smafa-0.5.0 written to work/ex/beta-1.38-1/sources/beta-2019-08-13/reg/smafa/0.5.0/Cargo.toml
[INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+1.37.0" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update"`
[INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+beta-2019-08-13" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update"`
[INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+1.37.0" "fetch" "--locked" "--manifest-path" "Cargo.toml"`
[INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+beta-2019-08-13" "fetch" "--locked" "--manifest-path" "Cargo.toml"`
[INFO] testing smafa-0.5.0 against beta-2019-08-13 for beta-1.38-1
[INFO] running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/beta-1.38-1/worker-1/beta-2019-08-13:/opt/crater/target:rw,Z" "-v" "/mnt/big/crater/work/ex/beta-1.38-1/sources/beta-2019-08-13/reg/smafa/0.5.0:/opt/crater/workdir:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/opt/crater/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/opt/crater/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/opt/crater/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/crater/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/crater/cargo-home" "-e" "RUSTUP_HOME=/opt/crater/rustup-home" "-w" "/opt/crater/workdir" "-m" "1536M" "--network" "none" "rustops/crates-build-env" "/opt/crater/cargo-home/bin/cargo" "+beta-2019-08-13" "build" "--frozen"`
[INFO] [stdout] 9b563da75212726313384136559ffe313b95c3fd48696177e8e21d44ddcf24dd
[INFO] running `"docker" "start" "-a" "9b563da75212726313384136559ffe313b95c3fd48696177e8e21d44ddcf24dd"`
[INFO] [stderr]    Compiling rawpointer v0.1.0
[INFO] [stderr]    Compiling ndarray v0.12.1
[INFO] [stderr]    Compiling bio v0.26.1
[INFO] [stderr]    Compiling strum v0.13.0
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling num-complex v0.2.3
[INFO] [stderr]    Compiling bv v0.10.0
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling snap v0.2.5
[INFO] [stderr]    Compiling matrixmultiply v0.1.15
[INFO] [stderr]    Compiling approx v0.3.2
[INFO] [stderr]    Compiling itertools-num v0.1.3
[INFO] [stderr]    Compiling derive-new v0.5.8
[INFO] [stderr]    Compiling statrs v0.9.0
[INFO] [stderr]    Compiling strum_macros v0.13.0
[INFO] [stderr]    Compiling env_logger v0.6.2
[INFO] [stderr]    Compiling bstr v0.2.7
[INFO] [stderr]    Compiling bio-types v0.5.1
[INFO] [stderr]    Compiling vec_map v0.8.1
[INFO] [stderr]    Compiling multimap v0.4.0
[INFO] [stderr]    Compiling clap v2.33.0
[INFO] [stderr]    Compiling csv v1.1.1
[INFO] [stderr]    Compiling smafa v0.5.0 (/opt/crater/workdir)
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/fragment_clusterer.rs:13:47
[INFO] [stderr]    |
[INFO] [stderr] 13 |                            print_stream: &mut std::io::Write){
[INFO] [stderr]    |                                               ^^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Write`
[INFO] [stderr]    |
[INFO] [stderr]    = note: `#[warn(bare_trait_objects)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/lib.rs:168:33
[INFO] [stderr]     |
[INFO] [stderr] 168 |              print_stream: &mut std::io::Write, k: usize,
[INFO] [stderr]     |                                 ^^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Write`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/lib.rs:306:24
[INFO] [stderr]     |
[INFO] [stderr] 306 |     print_stream: &mut std::io::Write,
[INFO] [stderr]     |                        ^^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Write`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/lib.rs:447:24
[INFO] [stderr]     |
[INFO] [stderr] 447 |     print_stream: &mut std::io::Write) {
[INFO] [stderr]     |                        ^^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Write`
[INFO] [stderr] 
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 48.23s
[INFO] running `"docker" "inspect" "9b563da75212726313384136559ffe313b95c3fd48696177e8e21d44ddcf24dd"`
[INFO] running `"docker" "rm" "-f" "9b563da75212726313384136559ffe313b95c3fd48696177e8e21d44ddcf24dd"`
[INFO] [stdout] 9b563da75212726313384136559ffe313b95c3fd48696177e8e21d44ddcf24dd
[INFO] running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/beta-1.38-1/worker-1/beta-2019-08-13:/opt/crater/target:rw,Z" "-v" "/mnt/big/crater/work/ex/beta-1.38-1/sources/beta-2019-08-13/reg/smafa/0.5.0:/opt/crater/workdir:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/opt/crater/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/opt/crater/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/opt/crater/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/crater/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/crater/cargo-home" "-e" "RUSTUP_HOME=/opt/crater/rustup-home" "-w" "/opt/crater/workdir" "-m" "1536M" "--network" "none" "rustops/crates-build-env" "/opt/crater/cargo-home/bin/cargo" "+beta-2019-08-13" "test" "--frozen" "--no-run"`
[INFO] [stdout] f9f291ef051f0cbf8e4647f566579ae666c40b5888a1a8b23bf5df60bf09fd55
[INFO] running `"docker" "start" "-a" "f9f291ef051f0cbf8e4647f566579ae666c40b5888a1a8b23bf5df60bf09fd55"`
[INFO] [stderr]    Compiling environment v0.1.1
[INFO] [stderr]    Compiling winapi v0.3.7
[INFO] [stderr]    Compiling tempfile v2.2.0
[INFO] [stderr]    Compiling winconsole v0.10.0
[INFO] [stderr]    Compiling colored v1.8.0
[INFO] [stderr]    Compiling assert_cli v0.6.3
[INFO] [stderr]    Compiling smafa v0.5.0 (/opt/crater/workdir)
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/fragment_clusterer.rs:13:47
[INFO] [stderr]    |
[INFO] [stderr] 13 |                            print_stream: &mut std::io::Write){
[INFO] [stderr]    |                                               ^^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Write`
[INFO] [stderr]    |
[INFO] [stderr]    = note: `#[warn(bare_trait_objects)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/lib.rs:168:33
[INFO] [stderr]     |
[INFO] [stderr] 168 |              print_stream: &mut std::io::Write, k: usize,
[INFO] [stderr]     |                                 ^^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Write`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/lib.rs:306:24
[INFO] [stderr]     |
[INFO] [stderr] 306 |     print_stream: &mut std::io::Write,
[INFO] [stderr]     |                        ^^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Write`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/lib.rs:447:24
[INFO] [stderr]     |
[INFO] [stderr] 447 |     print_stream: &mut std::io::Write) {
[INFO] [stderr]     |                        ^^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Write`
[INFO] [stderr] 
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 8.81s
[INFO] running `"docker" "inspect" "f9f291ef051f0cbf8e4647f566579ae666c40b5888a1a8b23bf5df60bf09fd55"`
[INFO] running `"docker" "rm" "-f" "f9f291ef051f0cbf8e4647f566579ae666c40b5888a1a8b23bf5df60bf09fd55"`
[INFO] [stdout] f9f291ef051f0cbf8e4647f566579ae666c40b5888a1a8b23bf5df60bf09fd55
[INFO] running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/beta-1.38-1/worker-1/beta-2019-08-13:/opt/crater/target:rw,Z" "-v" "/mnt/big/crater/work/ex/beta-1.38-1/sources/beta-2019-08-13/reg/smafa/0.5.0:/opt/crater/workdir:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/opt/crater/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/opt/crater/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/opt/crater/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/crater/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/crater/cargo-home" "-e" "RUSTUP_HOME=/opt/crater/rustup-home" "-w" "/opt/crater/workdir" "-m" "1536M" "--network" "none" "rustops/crates-build-env" "/opt/crater/cargo-home/bin/cargo" "+beta-2019-08-13" "test" "--frozen"`
[INFO] [stdout] 56a25d39b7404b1dbae7b138addb9682694bd86c52fb2eedc5c6810a5b255e19
[INFO] running `"docker" "start" "-a" "56a25d39b7404b1dbae7b138addb9682694bd86c52fb2eedc5c6810a5b255e19"`
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 0.08s
[INFO] [stderr]      Running /opt/crater/target/debug/deps/smafa-8e5d7273f7d0ad9f
[INFO] [stdout] 
[INFO] [stdout] running 8 tests
[INFO] [stdout] test fragment_clusterer::tests::test_bug1 ... ok
[INFO] [stdout] test fragment_clusterer::tests::test_best_hit_changes_bug ... ok
[INFO] [stdout] test tests::test_cluster_all_singletons ... ok
[INFO] [stdout] test fragment_clusterer::tests::test_simple ... ok
[INFO] [stdout] test translation::tests::test_hello_world ... ok
[INFO] [stdout] test tests::test_cluster_hello_world ... ok
[INFO] [stdout] test tests::makedb_and_query100seqs ... ok
[INFO] [stdout] test tests::test_cluster_many_seqs ... ok
[INFO] [stderr]      Running /opt/crater/target/debug/deps/smafa-e15f637c1fb36049
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 8 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]      Running /opt/crater/target/debug/deps/test_cmdline-b293739251c30f8a
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 5 tests
[INFO] [stdout] test tests::test_cluster_amino_acids ... ok
[INFO] [stdout] test tests::test_translated_makedb_and_query_shorter ... ok
[INFO] [stdout] test tests::test_protein_makedb_and_query ... ok
[INFO] [stdout] test tests::test_protein_makedb_and_query_shorter ... ok
[INFO] [stdout] test tests::test_db_version_incompatibility ... ok
[INFO] [stderr]    Doc-tests smafa
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 5 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
[INFO] [stdout] 
[INFO] running `"docker" "inspect" "56a25d39b7404b1dbae7b138addb9682694bd86c52fb2eedc5c6810a5b255e19"`
[INFO] running `"docker" "rm" "-f" "56a25d39b7404b1dbae7b138addb9682694bd86c52fb2eedc5c6810a5b255e19"`
[INFO] [stdout] 56a25d39b7404b1dbae7b138addb9682694bd86c52fb2eedc5c6810a5b255e19