[INFO] crate heme 0.3.1 is already in cache
[INFO] extracting crate heme 0.3.1 into work/ex/beta-1.38-1/sources/1.37.0/reg/heme/0.3.1
[INFO] extracting crate heme 0.3.1 into work/ex/beta-1.38-1/sources/beta-2019-08-13/reg/heme/0.3.1
[INFO] validating manifest of heme-0.3.1 on toolchain 1.37.0
[INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+1.37.0" "read-manifest" "--manifest-path" "Cargo.toml"`
[INFO] validating manifest of heme-0.3.1 on toolchain beta-2019-08-13
[INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+beta-2019-08-13" "read-manifest" "--manifest-path" "Cargo.toml"`
[INFO] started frobbing heme-0.3.1
[INFO] finished frobbing heme-0.3.1
[INFO] frobbed toml for heme-0.3.1 written to work/ex/beta-1.38-1/sources/1.37.0/reg/heme/0.3.1/Cargo.toml
[INFO] started frobbing heme-0.3.1
[INFO] finished frobbing heme-0.3.1
[INFO] frobbed toml for heme-0.3.1 written to work/ex/beta-1.38-1/sources/beta-2019-08-13/reg/heme/0.3.1/Cargo.toml
[INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+1.37.0" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update"`
[INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+beta-2019-08-13" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update"`
[INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+1.37.0" "fetch" "--locked" "--manifest-path" "Cargo.toml"`
[INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+beta-2019-08-13" "fetch" "--locked" "--manifest-path" "Cargo.toml"`
[INFO] testing heme-0.3.1 against beta-2019-08-13 for beta-1.38-1
[INFO] running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/beta-1.38-1/worker-1/beta-2019-08-13:/opt/crater/target:rw,Z" "-v" "/mnt/big/crater/work/ex/beta-1.38-1/sources/beta-2019-08-13/reg/heme/0.3.1:/opt/crater/workdir:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/opt/crater/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/opt/crater/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/opt/crater/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/crater/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/crater/cargo-home" "-e" "RUSTUP_HOME=/opt/crater/rustup-home" "-w" "/opt/crater/workdir" "-m" "1536M" "--network" "none" "rustops/crates-build-env" "/opt/crater/cargo-home/bin/cargo" "+beta-2019-08-13" "build" "--frozen"`
[INFO] [stdout] 7e6e3db83090b92d167f1d329bc727479f7ed3fd498bbe3005ee4a4dcc7e32bf
[INFO] running `"docker" "start" "-a" "7e6e3db83090b92d167f1d329bc727479f7ed3fd498bbe3005ee4a4dcc7e32bf"`
[INFO] [stderr]    Compiling heme v0.3.1 (/opt/crater/workdir)
[INFO] [stderr] warning: unused import: `std::collections::HashMap`
[INFO] [stderr]  --> src/sampling.rs:1:5
[INFO] [stderr]   |
[INFO] [stderr] 1 | use std::collections::HashMap; 
[INFO] [stderr]   |     ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]   |
[INFO] [stderr]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/sampling.rs:37:29
[INFO] [stderr]    |
[INFO] [stderr] 37 |     pub components: Vec<Box<Move>>,
[INFO] [stderr]    |                             ^^^^ help: use `dyn`: `dyn Move`
[INFO] [stderr]    |
[INFO] [stderr]    = note: `#[warn(bare_trait_objects)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/io.rs:97:46
[INFO] [stderr]    |
[INFO] [stderr] 97 | pub fn run(config: Config) -> Result<(), Box<Error>> {
[INFO] [stderr]    |                                              ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: unused variable: `protocol_name`
[INFO] [stderr]   --> src/sampling.rs:20:21
[INFO] [stderr]    |
[INFO] [stderr] 20 | pub fn get_protocol(protocol_name: &str) -> Protocol {
[INFO] [stderr]    |                     ^^^^^^^^^^^^^ help: consider prefixing with an underscore: `_protocol_name`
[INFO] [stderr]    |
[INFO] [stderr]    = note: `#[warn(unused_variables)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: unused variable: `a1`
[INFO] [stderr]   --> src/scoring.rs:24:39
[INFO] [stderr]    |
[INFO] [stderr] 24 | pub fn calculate_lennard_jones_energy(a1: &Atom, a2: &Atom, r: f64) -> f64 {
[INFO] [stderr]    |                                       ^^ help: consider prefixing with an underscore: `_a1`
[INFO] [stderr] 
[INFO] [stderr] warning: unused variable: `a2`
[INFO] [stderr]   --> src/scoring.rs:24:50
[INFO] [stderr]    |
[INFO] [stderr] 24 | pub fn calculate_lennard_jones_energy(a1: &Atom, a2: &Atom, r: f64) -> f64 {
[INFO] [stderr]    |                                                  ^^ help: consider prefixing with an underscore: `_a2`
[INFO] [stderr] 
[INFO] [stderr] warning: field is never used: `atoms`
[INFO] [stderr]   --> src/conformation.rs:52:5
[INFO] [stderr]    |
[INFO] [stderr] 52 |     atoms: Vec<Atom>,
[INFO] [stderr]    |     ^^^^^^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `#[warn(dead_code)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: field is never used: `residue_name`
[INFO] [stderr]   --> src/conformation.rs:53:5
[INFO] [stderr]    |
[INFO] [stderr] 53 |     residue_name: String,
[INFO] [stderr]    |     ^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: field is never used: `residue_index`
[INFO] [stderr]   --> src/conformation.rs:54:5
[INFO] [stderr]    |
[INFO] [stderr] 54 |     residue_index: i32,
[INFO] [stderr]    |     ^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 1.40s
[INFO] running `"docker" "inspect" "7e6e3db83090b92d167f1d329bc727479f7ed3fd498bbe3005ee4a4dcc7e32bf"`
[INFO] running `"docker" "rm" "-f" "7e6e3db83090b92d167f1d329bc727479f7ed3fd498bbe3005ee4a4dcc7e32bf"`
[INFO] [stdout] 7e6e3db83090b92d167f1d329bc727479f7ed3fd498bbe3005ee4a4dcc7e32bf
[INFO] running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/beta-1.38-1/worker-1/beta-2019-08-13:/opt/crater/target:rw,Z" "-v" "/mnt/big/crater/work/ex/beta-1.38-1/sources/beta-2019-08-13/reg/heme/0.3.1:/opt/crater/workdir:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/opt/crater/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/opt/crater/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/opt/crater/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/crater/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/crater/cargo-home" "-e" "RUSTUP_HOME=/opt/crater/rustup-home" "-w" "/opt/crater/workdir" "-m" "1536M" "--network" "none" "rustops/crates-build-env" "/opt/crater/cargo-home/bin/cargo" "+beta-2019-08-13" "test" "--frozen" "--no-run"`
[INFO] [stdout] 73409c90fbdc9a729209b45ea19f440d2776202e52c100b368c725970c254e64
[INFO] running `"docker" "start" "-a" "73409c90fbdc9a729209b45ea19f440d2776202e52c100b368c725970c254e64"`
[INFO] [stderr]    Compiling heme v0.3.1 (/opt/crater/workdir)
[INFO] [stderr] warning: unused import: `std::collections::HashMap`
[INFO] [stderr]  --> src/sampling.rs:1:5
[INFO] [stderr]   |
[INFO] [stderr] 1 | use std::collections::HashMap; 
[INFO] [stderr]   |     ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]   |
[INFO] [stderr]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/sampling.rs:37:29
[INFO] [stderr]    |
[INFO] [stderr] 37 |     pub components: Vec<Box<Move>>,
[INFO] [stderr]    |                             ^^^^ help: use `dyn`: `dyn Move`
[INFO] [stderr]    |
[INFO] [stderr]    = note: `#[warn(bare_trait_objects)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/io.rs:97:46
[INFO] [stderr]    |
[INFO] [stderr] 97 | pub fn run(config: Config) -> Result<(), Box<Error>> {
[INFO] [stderr]    |                                              ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: unused variable: `protocol_name`
[INFO] [stderr]   --> src/sampling.rs:20:21
[INFO] [stderr]    |
[INFO] [stderr] 20 | pub fn get_protocol(protocol_name: &str) -> Protocol {
[INFO] [stderr]    |                     ^^^^^^^^^^^^^ help: consider prefixing with an underscore: `_protocol_name`
[INFO] [stderr]    |
[INFO] [stderr]    = note: `#[warn(unused_variables)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: unused variable: `a1`
[INFO] [stderr]   --> src/scoring.rs:24:39
[INFO] [stderr]    |
[INFO] [stderr] 24 | pub fn calculate_lennard_jones_energy(a1: &Atom, a2: &Atom, r: f64) -> f64 {
[INFO] [stderr]    |                                       ^^ help: consider prefixing with an underscore: `_a1`
[INFO] [stderr] 
[INFO] [stderr] warning: unused variable: `a2`
[INFO] [stderr]   --> src/scoring.rs:24:50
[INFO] [stderr]    |
[INFO] [stderr] 24 | pub fn calculate_lennard_jones_energy(a1: &Atom, a2: &Atom, r: f64) -> f64 {
[INFO] [stderr]    |                                                  ^^ help: consider prefixing with an underscore: `_a2`
[INFO] [stderr] 
[INFO] [stderr] warning: field is never used: `atoms`
[INFO] [stderr]   --> src/conformation.rs:52:5
[INFO] [stderr]    |
[INFO] [stderr] 52 |     atoms: Vec<Atom>,
[INFO] [stderr]    |     ^^^^^^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `#[warn(dead_code)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: field is never used: `residue_name`
[INFO] [stderr]   --> src/conformation.rs:53:5
[INFO] [stderr]    |
[INFO] [stderr] 53 |     residue_name: String,
[INFO] [stderr]    |     ^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: field is never used: `residue_index`
[INFO] [stderr]   --> src/conformation.rs:54:5
[INFO] [stderr]    |
[INFO] [stderr] 54 |     residue_index: i32,
[INFO] [stderr]    |     ^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: function `H` should have a snake case name
[INFO] [stderr]    --> src/io.rs:152:12
[INFO] [stderr]     |
[INFO] [stderr] 152 |         fn H(l: &f64) -> f64 {
[INFO] [stderr]     |            ^ help: convert the identifier to snake case: `h`
[INFO] [stderr]     |
[INFO] [stderr]     = note: `#[warn(non_snake_case)]` on by default
[INFO] [stderr] 
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 0.70s
[INFO] running `"docker" "inspect" "73409c90fbdc9a729209b45ea19f440d2776202e52c100b368c725970c254e64"`
[INFO] running `"docker" "rm" "-f" "73409c90fbdc9a729209b45ea19f440d2776202e52c100b368c725970c254e64"`
[INFO] [stdout] 73409c90fbdc9a729209b45ea19f440d2776202e52c100b368c725970c254e64
[INFO] running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/beta-1.38-1/worker-1/beta-2019-08-13:/opt/crater/target:rw,Z" "-v" "/mnt/big/crater/work/ex/beta-1.38-1/sources/beta-2019-08-13/reg/heme/0.3.1:/opt/crater/workdir:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/opt/crater/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/opt/crater/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/opt/crater/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/crater/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/crater/cargo-home" "-e" "RUSTUP_HOME=/opt/crater/rustup-home" "-w" "/opt/crater/workdir" "-m" "1536M" "--network" "none" "rustops/crates-build-env" "/opt/crater/cargo-home/bin/cargo" "+beta-2019-08-13" "test" "--frozen"`
[INFO] [stdout] a9dd9cc5beac29c957ec807790872d647e47935fac6ee0eaa98e0083c3029d1d
[INFO] running `"docker" "start" "-a" "a9dd9cc5beac29c957ec807790872d647e47935fac6ee0eaa98e0083c3029d1d"`
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 0.00s
[INFO] [stderr]      Running /opt/crater/target/debug/deps/heme-c05ba2aec923f126
[INFO] [stdout] 
[INFO] [stdout] running 4 tests
[INFO] [stdout] test io::tests::test_lennard_jones_atom_loading ... ok
[INFO] [stdout] test io::tests::test_pdb_parsing ... ok
[INFO] [stderr]      Running /opt/crater/target/debug/deps/heme-c4363196a1bea42c
[INFO] [stdout] test io::tests::test_entropy_function ... ok
[INFO] [stderr]    Doc-tests heme
[INFO] [stdout] test io::tests::test_new_atoms_testy ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 4 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 1 test
[INFO] [stdout] test src/conformation.rs - conformation::XYZ (line 18) ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 1 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
[INFO] [stdout] 
[INFO] running `"docker" "inspect" "a9dd9cc5beac29c957ec807790872d647e47935fac6ee0eaa98e0083c3029d1d"`
[INFO] running `"docker" "rm" "-f" "a9dd9cc5beac29c957ec807790872d647e47935fac6ee0eaa98e0083c3029d1d"`
[INFO] [stdout] a9dd9cc5beac29c957ec807790872d647e47935fac6ee0eaa98e0083c3029d1d