[INFO] crate gb-io 0.5.0 is already in cache [INFO] extracting crate gb-io 0.5.0 into work/ex/beta-1.38-1/sources/1.37.0/reg/gb-io/0.5.0 [INFO] extracting crate gb-io 0.5.0 into work/ex/beta-1.38-1/sources/beta-2019-08-13/reg/gb-io/0.5.0 [INFO] validating manifest of gb-io-0.5.0 on toolchain 1.37.0 [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+1.37.0" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] validating manifest of gb-io-0.5.0 on toolchain beta-2019-08-13 [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+beta-2019-08-13" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] started frobbing gb-io-0.5.0 [INFO] finished frobbing gb-io-0.5.0 [INFO] frobbed toml for gb-io-0.5.0 written to work/ex/beta-1.38-1/sources/1.37.0/reg/gb-io/0.5.0/Cargo.toml [INFO] started frobbing gb-io-0.5.0 [INFO] finished frobbing gb-io-0.5.0 [INFO] frobbed toml for gb-io-0.5.0 written to work/ex/beta-1.38-1/sources/beta-2019-08-13/reg/gb-io/0.5.0/Cargo.toml [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+1.37.0" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update"` [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+beta-2019-08-13" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update"` [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+1.37.0" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+beta-2019-08-13" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] testing gb-io-0.5.0 against beta-2019-08-13 for beta-1.38-1 [INFO] running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/beta-1.38-1/worker-6/beta-2019-08-13:/opt/crater/target:rw,Z" "-v" "/mnt/big/crater/work/ex/beta-1.38-1/sources/beta-2019-08-13/reg/gb-io/0.5.0:/opt/crater/workdir:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/opt/crater/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/opt/crater/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/opt/crater/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/crater/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/crater/cargo-home" "-e" "RUSTUP_HOME=/opt/crater/rustup-home" "-w" "/opt/crater/workdir" "-m" "1536M" "--network" "none" "rustops/crates-build-env" "/opt/crater/cargo-home/bin/cargo" "+beta-2019-08-13" "build" "--frozen"` [INFO] [stdout] fb2e1053d5461dec3947fb7dd8b29b865ed3935490f551515fc1d3816756e87a [INFO] running `"docker" "start" "-a" "fb2e1053d5461dec3947fb7dd8b29b865ed3935490f551515fc1d3816756e87a"` [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Compiling bio v0.25.0 [INFO] [stderr] Compiling circular v0.2.0 [INFO] [stderr] Compiling statrs v0.9.0 [INFO] [stderr] Compiling gb-io v0.5.0 (/opt/crater/workdir) [INFO] [stderr] Compiling bio-types v0.5.1 [INFO] [stderr] Compiling bv v0.10.0 [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/seq.rs:141:28 [INFO] [stderr] | [INFO] [stderr] 141 | External(Location, Box), [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/seq.rs:743:42 [INFO] [stderr] | [INFO] [stderr] 743 | F: (FnMut(&str) -> Result>) + 'a, [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/seq.rs:755:42 [INFO] [stderr] | [INFO] [stderr] 755 | F: (FnMut(&str) -> Result>) + 'a, [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/reader/nom_parsers.rs:841:35 [INFO] [stderr] | [INFO] [stderr] 841 | pub type NomParser = &'static (Fn(&[u8]) -> IResult<&[u8], T> + 'static); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: use `dyn`: `dyn Fn(&[u8]) -> IResult<&[u8], T> + 'static` [INFO] [stderr] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 16.22s [INFO] running `"docker" "inspect" "fb2e1053d5461dec3947fb7dd8b29b865ed3935490f551515fc1d3816756e87a"` [INFO] running `"docker" "rm" "-f" "fb2e1053d5461dec3947fb7dd8b29b865ed3935490f551515fc1d3816756e87a"` [INFO] [stdout] fb2e1053d5461dec3947fb7dd8b29b865ed3935490f551515fc1d3816756e87a [INFO] running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/beta-1.38-1/worker-6/beta-2019-08-13:/opt/crater/target:rw,Z" "-v" "/mnt/big/crater/work/ex/beta-1.38-1/sources/beta-2019-08-13/reg/gb-io/0.5.0:/opt/crater/workdir:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/opt/crater/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/opt/crater/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/opt/crater/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/crater/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/crater/cargo-home" "-e" "RUSTUP_HOME=/opt/crater/rustup-home" "-w" "/opt/crater/workdir" "-m" "1536M" "--network" "none" "rustops/crates-build-env" "/opt/crater/cargo-home/bin/cargo" "+beta-2019-08-13" "test" "--frozen" "--no-run"` [INFO] [stdout] eb5b93010cfab9bf9de136545f92ad99da3713fae4fd32873d113f66419c9f5a [INFO] running `"docker" "start" "-a" "eb5b93010cfab9bf9de136545f92ad99da3713fae4fd32873d113f66419c9f5a"` [INFO] [stderr] Compiling gb-io v0.5.0 (/opt/crater/workdir) [INFO] [stderr] error: couldn't read src/../tests/mg1655.gb: No such file or directory (os error 2) [INFO] [stderr] --> src/lib.rs:72:21 [INFO] [stderr] | [INFO] [stderr] 72 | let ecoli = include_bytes!("../tests/mg1655.gb"); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] error: couldn't read src/../tests/circ.gb: No such file or directory (os error 2) [INFO] [stderr] --> src/lib.rs:88:32 [INFO] [stderr] | [INFO] [stderr] 88 | let circ = parse_slice(include_bytes!("../tests/circ.gb")).unwrap(); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] error: couldn't read src/../tests/circ.gb: No such file or directory (os error 2) [INFO] [stderr] --> src/lib.rs:95:32 [INFO] [stderr] | [INFO] [stderr] 95 | let circ = parse_slice(include_bytes!("../tests/circ.gb")).unwrap().pop().unwrap(); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] error: couldn't read src/../tests/biopython_tests/ls_orchid.gb: No such file or directory (os error 2) [INFO] [stderr] --> src/lib.rs:114:25 [INFO] [stderr] | [INFO] [stderr] 114 | parse_slice(include_bytes!("../tests/biopython_tests/ls_orchid.gb")).unwrap(); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/seq.rs:141:28 [INFO] [stderr] | [INFO] [stderr] 141 | External(Location, Box), [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/seq.rs:743:42 [INFO] [stderr] | [INFO] [stderr] 743 | F: (FnMut(&str) -> Result>) + 'a, [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/seq.rs:755:42 [INFO] [stderr] | [INFO] [stderr] 755 | F: (FnMut(&str) -> Result>) + 'a, [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/reader/nom_parsers.rs:841:35 [INFO] [stderr] | [INFO] [stderr] 841 | pub type NomParser = &'static (Fn(&[u8]) -> IResult<&[u8], T> + 'static); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: use `dyn`: `dyn Fn(&[u8]) -> IResult<&[u8], T> + 'static` [INFO] [stderr] [INFO] [stderr] error: aborting due to 4 previous errors [INFO] [stderr] [INFO] [stderr] error: Could not compile `gb-io`. [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `"docker" "inspect" "eb5b93010cfab9bf9de136545f92ad99da3713fae4fd32873d113f66419c9f5a"` [INFO] running `"docker" "rm" "-f" "eb5b93010cfab9bf9de136545f92ad99da3713fae4fd32873d113f66419c9f5a"` [INFO] [stdout] eb5b93010cfab9bf9de136545f92ad99da3713fae4fd32873d113f66419c9f5a