[INFO] crate flann-sys 0.1.0 is already in cache [INFO] extracting crate flann-sys 0.1.0 into work/ex/beta-1.38-1/sources/1.37.0/reg/flann-sys/0.1.0 [INFO] extracting crate flann-sys 0.1.0 into work/ex/beta-1.38-1/sources/beta-2019-08-13/reg/flann-sys/0.1.0 [INFO] validating manifest of flann-sys-0.1.0 on toolchain 1.37.0 [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+1.37.0" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] validating manifest of flann-sys-0.1.0 on toolchain beta-2019-08-13 [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+beta-2019-08-13" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] started frobbing flann-sys-0.1.0 [INFO] finished frobbing flann-sys-0.1.0 [INFO] frobbed toml for flann-sys-0.1.0 written to work/ex/beta-1.38-1/sources/1.37.0/reg/flann-sys/0.1.0/Cargo.toml [INFO] started frobbing flann-sys-0.1.0 [INFO] finished frobbing flann-sys-0.1.0 [INFO] frobbed toml for flann-sys-0.1.0 written to work/ex/beta-1.38-1/sources/beta-2019-08-13/reg/flann-sys/0.1.0/Cargo.toml [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+1.37.0" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update"` [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+beta-2019-08-13" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update"` [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+1.37.0" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+beta-2019-08-13" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] testing flann-sys-0.1.0 against beta-2019-08-13 for beta-1.38-1 [INFO] running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/beta-1.38-1/worker-2/beta-2019-08-13:/opt/crater/target:rw,Z" "-v" "/mnt/big/crater/work/ex/beta-1.38-1/sources/beta-2019-08-13/reg/flann-sys/0.1.0:/opt/crater/workdir:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/opt/crater/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/opt/crater/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/opt/crater/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/crater/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/crater/cargo-home" "-e" "RUSTUP_HOME=/opt/crater/rustup-home" "-w" "/opt/crater/workdir" "-m" "1536M" "--network" "none" "rustops/crates-build-env" "/opt/crater/cargo-home/bin/cargo" "+beta-2019-08-13" "build" "--frozen"` [INFO] [stdout] 4db6692cd0064e17e351d2c3ffdee4b6d86aa2917688def5182d77e71763921f [INFO] running `"docker" "start" "-a" "4db6692cd0064e17e351d2c3ffdee4b6d86aa2917688def5182d77e71763921f"` [INFO] [stderr] Compiling libc v0.2.62 [INFO] [stderr] Compiling libloading v0.4.3 [INFO] [stderr] Compiling bindgen v0.32.3 [INFO] [stderr] Compiling peeking_take_while v0.1.2 [INFO] [stderr] Compiling clang-sys v0.21.2 [INFO] [stderr] Compiling proc-macro2 v0.2.3 [INFO] [stderr] Compiling cmake v0.1.41 [INFO] [stderr] Compiling env_logger v0.4.3 [INFO] [stderr] Compiling quote v0.4.2 [INFO] [stderr] Compiling memchr v1.0.2 [INFO] [stderr] Compiling atty v0.2.13 [INFO] [stderr] Compiling which v1.0.5 [INFO] [stderr] Compiling clap v2.33.0 [INFO] [stderr] Compiling nom v3.2.1 [INFO] [stderr] Compiling cexpr v0.2.3 [INFO] [stderr] Compiling flann-sys v0.1.0 (/opt/crater/workdir) [INFO] [stderr] error: failed to run custom build command for `flann-sys v0.1.0 (/opt/crater/workdir)` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/crater/target/debug/build/flann-sys-fdbd9135b0b8fd91/build-script-build` (exit code: 101) [INFO] [stderr] --- stdout [INFO] [stderr] cargo:rustc-link-lib=gomp [INFO] [stderr] cargo:rustc-link-lib=stdc++ [INFO] [stderr] running: "cmake" "/opt/crater/workdir/flann" "-DBUILD_EXAMPLES=OFF" "-DBUILD_TESTS=OFF" "-DBUILD_DOC=OFF" "-DBUILD_PYTHON_BINDINGS=OFF" "-DBUILD_MATLAB_BINDINGS=OFF" "-DUSE_OPENMP=ON" "-DCMAKE_INSTALL_PREFIX=/opt/crater/target/debug/build/flann-sys-d7323737274c2a72/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_C_COMPILER=/usr/bin/cc" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_CXX_COMPILER=/usr/bin/c++" "-DCMAKE_BUILD_TYPE=Debug" [INFO] [stderr] -- The C compiler identification is GNU 6.3.0 [INFO] [stderr] -- The CXX compiler identification is GNU 6.3.0 [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc -- works [INFO] [stderr] -- Detecting C compiler ABI info [INFO] [stderr] -- Detecting C compiler ABI info - done [INFO] [stderr] -- Detecting C compile features [INFO] [stderr] -- Detecting C compile features - done [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ -- works [INFO] [stderr] -- Detecting CXX compiler ABI info [INFO] [stderr] -- Detecting CXX compiler ABI info - done [INFO] [stderr] -- Detecting CXX compile features [INFO] [stderr] -- Detecting CXX compile features - done [INFO] [stderr] -- Found PythonInterp: /usr/bin/python (found version "2.7.13") [INFO] [stderr] -- Could NOT find HDF5 (missing: HDF5_LIBRARIES HDF5_INCLUDE_DIRS) [INFO] [stderr] -- Could NOT find GTest (missing: GTEST_LIBRARY GTEST_INCLUDE_DIR GTEST_MAIN_LIBRARY) [INFO] [stderr] -- Try OpenMP C flag = [-fopenmp] [INFO] [stderr] -- Performing Test OpenMP_FLAG_DETECTED [INFO] [stderr] -- Performing Test OpenMP_FLAG_DETECTED - Success [INFO] [stderr] -- Try OpenMP CXX flag = [-fopenmp] [INFO] [stderr] -- Performing Test OpenMP_FLAG_DETECTED [INFO] [stderr] -- Performing Test OpenMP_FLAG_DETECTED - Success [INFO] [stderr] -- Found OpenMP: -fopenmp [INFO] [stderr] -- Install prefix: /opt/crater/target/debug/build/flann-sys-d7323737274c2a72/out [INFO] [stderr] -- Build type: Debug [INFO] [stderr] -- Building C bindings: ON [INFO] [stderr] -- Building examples: OFF [INFO] [stderr] -- Building tests: OFF [INFO] [stderr] -- Building documentation: OFF [INFO] [stderr] -- Building python bindings: OFF [INFO] [stderr] -- Building matlab bindings: OFF [INFO] [stderr] -- Building CUDA library: OFF [INFO] [stderr] -- Using OpenMP support: ON [INFO] [stderr] -- Using MPI support: OFF [INFO] [stderr] -- Configuring incomplete, errors occurred! [INFO] [stderr] See also "/opt/crater/target/debug/build/flann-sys-d7323737274c2a72/out/build/CMakeFiles/CMakeOutput.log". [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] CMake Warning at CMakeLists.txt:78 (message): [INFO] [stderr] hdf5 library not found, some tests will not be run [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] CMake Warning at CMakeLists.txt:117 (message): [INFO] [stderr] gtest library not found, some tests will not be run [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] CMake Warning (dev) at /usr/share/cmake-3.7/Modules/FindOpenMP.cmake:179 (if): [INFO] [stderr] if given arguments: [INFO] [stderr] [INFO] [stderr] "TRUE" [INFO] [stderr] [INFO] [stderr] An argument named "TRUE" appears in a conditional statement. Policy [INFO] [stderr] CMP0012 is not set: if() recognizes numbers and boolean constants. Run [INFO] [stderr] "cmake --help-policy CMP0012" for policy details. Use the cmake_policy [INFO] [stderr] command to set the policy and suppress this warning. [INFO] [stderr] Call Stack (most recent call first): [INFO] [stderr] /usr/share/cmake-3.7/Modules/FindOpenMP.cmake:224 (_OPENMP_GET_SPEC_DATE) [INFO] [stderr] CMakeLists.txt:122 (find_package) [INFO] [stderr] This warning is for project developers. Use -Wno-dev to suppress it. [INFO] [stderr] [INFO] [stderr] CMake Warning (dev) at /usr/share/cmake-3.7/Modules/FindOpenMP.cmake:179 (if): [INFO] [stderr] if given arguments: [INFO] [stderr] [INFO] [stderr] "TRUE" [INFO] [stderr] [INFO] [stderr] An argument named "TRUE" appears in a conditional statement. Policy [INFO] [stderr] CMP0012 is not set: if() recognizes numbers and boolean constants. Run [INFO] [stderr] "cmake --help-policy CMP0012" for policy details. Use the cmake_policy [INFO] [stderr] command to set the policy and suppress this warning. [INFO] [stderr] Call Stack (most recent call first): [INFO] [stderr] /usr/share/cmake-3.7/Modules/FindOpenMP.cmake:266 (_OPENMP_GET_SPEC_DATE) [INFO] [stderr] CMakeLists.txt:122 (find_package) [INFO] [stderr] This warning is for project developers. Use -Wno-dev to suppress it. [INFO] [stderr] [INFO] [stderr] CMake Error: Could not open file for write in copy operation /opt/crater/workdir/flann/src/cpp/flann/config.h.tmp [INFO] [stderr] CMake Error: : System Error: Read-only file system [INFO] [stderr] CMake Error at src/cpp/CMakeLists.txt:5 (configure_file): [INFO] [stderr] configure_file Problem configuring file [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] thread 'main' panicked at ' [INFO] [stderr] command did not execute successfully, got: exit code: 1 [INFO] [stderr] [INFO] [stderr] build script failed, must exit now', /opt/crater/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.41/src/lib.rs:835:5 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x55f480614b4b - backtrace::backtrace::libunwind::trace::h23ae608c8b906c69 [INFO] [stderr] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.34/src/backtrace/libunwind.rs:88 [INFO] [stderr] 1: 0x55f480614b4b - backtrace::backtrace::trace_unsynchronized::h65b3ea295a85fd48 [INFO] [stderr] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.34/src/backtrace/mod.rs:66 [INFO] [stderr] 2: 0x55f480614b4b - std::sys_common::backtrace::_print::h24f527b44b6cfc06 [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:47 [INFO] [stderr] 3: 0x55f480614b4b - std::sys_common::backtrace::print::h712608e4347fd64a [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:36 [INFO] [stderr] 4: 0x55f480614b4b - std::panicking::default_hook::{{closure}}::h6c3d570c2b500048 [INFO] [stderr] at src/libstd/panicking.rs:200 [INFO] [stderr] 5: 0x55f480614826 - std::panicking::default_hook::hb29963fb4747e0dd [INFO] [stderr] at src/libstd/panicking.rs:214 [INFO] [stderr] 6: 0x55f4806152bd - std::panicking::rust_panic_with_hook::hd1236c3083de823a [INFO] [stderr] at src/libstd/panicking.rs:477 [INFO] [stderr] 7: 0x55f480614e42 - std::panicking::continue_panic_fmt::he38ad41d6304a12c [INFO] [stderr] at src/libstd/panicking.rs:384 [INFO] [stderr] 8: 0x55f480614d8f - std::panicking::begin_panic_fmt::h4b478f1ed53f4521 [INFO] [stderr] at src/libstd/panicking.rs:339 [INFO] [stderr] 9: 0x55f47ff86db6 - cmake::fail::he616d168f760b867 [INFO] [stderr] at /opt/crater/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.41/src/lib.rs:835 [INFO] [stderr] 10: 0x55f47ff8673a - cmake::run::h9fd5ba790a12dcd0 [INFO] [stderr] at /opt/crater/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.41/src/lib.rs:813 [INFO] [stderr] 11: 0x55f47ff82188 - cmake::Config::build::h154e972cdb5ee120 [INFO] [stderr] at /opt/crater/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.41/src/lib.rs:651 [INFO] [stderr] 12: 0x55f47ff7e02c - build_script_build::main::h63f7dce587d8acb9 [INFO] [stderr] at /opt/crater/workdir/build.rs:30 [INFO] [stderr] 13: 0x55f47ff7e5f0 - std::rt::lang_start::{{closure}}::hae5933efdb523d4e [INFO] [stderr] at /rustc/e450539c2a8d7f791268d699cbe45ab3e57d43a1/src/libstd/rt.rs:64 [INFO] [stderr] 14: 0x55f480614cc3 - std::rt::lang_start_internal::{{closure}}::hf367a5a6ae52b0ce [INFO] [stderr] at src/libstd/rt.rs:49 [INFO] [stderr] 15: 0x55f480614cc3 - std::panicking::try::do_call::h9d779bc5e27e3284 [INFO] [stderr] at src/libstd/panicking.rs:296 [INFO] [stderr] 16: 0x55f48061d01a - __rust_maybe_catch_panic [INFO] [stderr] at src/libpanic_unwind/lib.rs:80 [INFO] [stderr] 17: 0x55f4806157cd - std::panicking::try::h4af22d9cb0afa351 [INFO] [stderr] at src/libstd/panicking.rs:275 [INFO] [stderr] 18: 0x55f4806157cd - std::panic::catch_unwind::hbb68a9ada87bfb97 [INFO] [stderr] at src/libstd/panic.rs:394 [INFO] [stderr] 19: 0x55f4806157cd - std::rt::lang_start_internal::hba9e09d74440ce4d [INFO] [stderr] at src/libstd/rt.rs:48 [INFO] [stderr] 20: 0x55f47ff7e5c9 - std::rt::lang_start::h4691cd2949a3202b [INFO] [stderr] at /rustc/e450539c2a8d7f791268d699cbe45ab3e57d43a1/src/libstd/rt.rs:64 [INFO] [stderr] 21: 0x55f47ff7e40a - main [INFO] [stderr] 22: 0x7fb8361952e1 - __libc_start_main [INFO] [stderr] 23: 0x55f47ff7bffa - _start [INFO] [stderr] 24: 0x0 - [INFO] [stderr] [INFO] running `"docker" "inspect" "4db6692cd0064e17e351d2c3ffdee4b6d86aa2917688def5182d77e71763921f"` [INFO] running `"docker" "rm" "-f" "4db6692cd0064e17e351d2c3ffdee4b6d86aa2917688def5182d77e71763921f"` [INFO] [stdout] 4db6692cd0064e17e351d2c3ffdee4b6d86aa2917688def5182d77e71763921f