[INFO] crate finch 0.2.0 is already in cache [INFO] extracting crate finch 0.2.0 into work/ex/beta-1.38-1/sources/1.37.0/reg/finch/0.2.0 [INFO] extracting crate finch 0.2.0 into work/ex/beta-1.38-1/sources/beta-2019-08-13/reg/finch/0.2.0 [INFO] validating manifest of finch-0.2.0 on toolchain 1.37.0 [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+1.37.0" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] validating manifest of finch-0.2.0 on toolchain beta-2019-08-13 [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+beta-2019-08-13" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] started frobbing finch-0.2.0 [INFO] finished frobbing finch-0.2.0 [INFO] frobbed toml for finch-0.2.0 written to work/ex/beta-1.38-1/sources/1.37.0/reg/finch/0.2.0/Cargo.toml [INFO] started frobbing finch-0.2.0 [INFO] finished frobbing finch-0.2.0 [INFO] frobbed toml for finch-0.2.0 written to work/ex/beta-1.38-1/sources/beta-2019-08-13/reg/finch/0.2.0/Cargo.toml [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+1.37.0" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update"` [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+beta-2019-08-13" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update"` [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+1.37.0" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+beta-2019-08-13" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] testing finch-0.2.0 against beta-2019-08-13 for beta-1.38-1 [INFO] running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/beta-1.38-1/worker-5/beta-2019-08-13:/opt/crater/target:rw,Z" "-v" "/mnt/big/crater/work/ex/beta-1.38-1/sources/beta-2019-08-13/reg/finch/0.2.0:/opt/crater/workdir:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/opt/crater/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/opt/crater/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/opt/crater/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/crater/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/crater/cargo-home" "-e" "RUSTUP_HOME=/opt/crater/rustup-home" "-w" "/opt/crater/workdir" "-m" "1536M" "--network" "none" "rustops/crates-build-env" "/opt/crater/cargo-home/bin/cargo" "+beta-2019-08-13" "build" "--frozen"` [INFO] [stdout] 25009f1fc76c6973556276b24f2b372d334ea0c906936acf0523ed4f7ecc7fd7 [INFO] running `"docker" "start" "-a" "25009f1fc76c6973556276b24f2b372d334ea0c906936acf0523ed4f7ecc7fd7"` [INFO] [stderr] Compiling podio v0.1.6 [INFO] [stderr] Compiling strsim v0.7.0 [INFO] [stderr] Compiling murmurhash3 v0.0.5 [INFO] [stderr] Compiling bzip2-sys v0.1.7 [INFO] [stderr] Compiling lzma-sys v0.1.15 [INFO] [stderr] Compiling textwrap v0.10.0 [INFO] [stderr] Compiling capnp v0.9.5 [INFO] [stderr] Compiling msdos_time v0.1.6 [INFO] [stderr] Compiling flate2 v1.0.11 [INFO] [stderr] Compiling clap v2.32.0 [INFO] [stderr] Compiling xz2 v0.1.6 [INFO] [stderr] Compiling bzip2 v0.3.3 [INFO] [stderr] Compiling zip v0.4.2 [INFO] [stderr] Compiling needletail v0.2.2 [INFO] [stderr] Compiling finch v0.2.0 (/opt/crater/workdir) [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/serialization.rs:174:39 [INFO] [stderr] | [INFO] [stderr] 174 | pub fn write_mash_file(mut file: &mut Write, sketches: &MultiSketch) -> FinchResult<()> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Write` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/serialization.rs:231:38 [INFO] [stderr] | [INFO] [stderr] 231 | pub fn read_mash_file(mut file: &mut BufRead) -> FinchResult { [INFO] [stderr] | ^^^^^^^ help: use `dyn`: `dyn BufRead` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/main.rs:45:16 [INFO] [stderr] | [INFO] [stderr] 45 | F: Fn(&mut Write) -> Result<()>, [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Write` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stderr] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 30.34s [INFO] running `"docker" "inspect" "25009f1fc76c6973556276b24f2b372d334ea0c906936acf0523ed4f7ecc7fd7"` [INFO] running `"docker" "rm" "-f" "25009f1fc76c6973556276b24f2b372d334ea0c906936acf0523ed4f7ecc7fd7"` [INFO] [stdout] 25009f1fc76c6973556276b24f2b372d334ea0c906936acf0523ed4f7ecc7fd7 [INFO] running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/beta-1.38-1/worker-5/beta-2019-08-13:/opt/crater/target:rw,Z" "-v" "/mnt/big/crater/work/ex/beta-1.38-1/sources/beta-2019-08-13/reg/finch/0.2.0:/opt/crater/workdir:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/opt/crater/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/opt/crater/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/opt/crater/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/crater/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/crater/cargo-home" "-e" "RUSTUP_HOME=/opt/crater/rustup-home" "-w" "/opt/crater/workdir" "-m" "1536M" "--network" "none" "rustops/crates-build-env" "/opt/crater/cargo-home/bin/cargo" "+beta-2019-08-13" "test" "--frozen" "--no-run"` [INFO] [stdout] 3417fb8f35a005a54a3b5a2306f1be536630480629bbad2e6803ef35af72862f [INFO] running `"docker" "start" "-a" "3417fb8f35a005a54a3b5a2306f1be536630480629bbad2e6803ef35af72862f"` [INFO] [stderr] Compiling finch v0.2.0 (/opt/crater/workdir) [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/main.rs:45:16 [INFO] [stderr] | [INFO] [stderr] 45 | F: Fn(&mut Write) -> Result<()>, [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Write` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/serialization.rs:174:39 [INFO] [stderr] | [INFO] [stderr] 174 | pub fn write_mash_file(mut file: &mut Write, sketches: &MultiSketch) -> FinchResult<()> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Write` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/serialization.rs:231:38 [INFO] [stderr] | [INFO] [stderr] 231 | pub fn read_mash_file(mut file: &mut BufRead) -> FinchResult { [INFO] [stderr] | ^^^^^^^ help: use `dyn`: `dyn BufRead` [INFO] [stderr] [INFO] [stderr] warning: unused variable: `queue` [INFO] [stderr] --> src/minhashes.rs:170:13 [INFO] [stderr] | [INFO] [stderr] 170 | let mut queue = MinHashKmers::new(100, 42); [INFO] [stderr] | ^^^^^ help: consider prefixing with an underscore: `_queue` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_variables)]` on by default [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/minhashes.rs:170:9 [INFO] [stderr] | [INFO] [stderr] 170 | let mut queue = MinHashKmers::new(100, 42); [INFO] [stderr] | ----^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_mut)]` on by default [INFO] [stderr] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 2.16s [INFO] running `"docker" "inspect" "3417fb8f35a005a54a3b5a2306f1be536630480629bbad2e6803ef35af72862f"` [INFO] running `"docker" "rm" "-f" "3417fb8f35a005a54a3b5a2306f1be536630480629bbad2e6803ef35af72862f"` [INFO] [stdout] 3417fb8f35a005a54a3b5a2306f1be536630480629bbad2e6803ef35af72862f [INFO] running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/beta-1.38-1/worker-5/beta-2019-08-13:/opt/crater/target:rw,Z" "-v" "/mnt/big/crater/work/ex/beta-1.38-1/sources/beta-2019-08-13/reg/finch/0.2.0:/opt/crater/workdir:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/opt/crater/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/opt/crater/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/opt/crater/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/crater/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/crater/cargo-home" "-e" "RUSTUP_HOME=/opt/crater/rustup-home" "-w" "/opt/crater/workdir" "-m" "1536M" "--network" "none" "rustops/crates-build-env" "/opt/crater/cargo-home/bin/cargo" "+beta-2019-08-13" "test" "--frozen"` [INFO] [stdout] 990b82e964ee48bd0b3d3f48c3672e309ae1874a0df43be9b12e668f680715d5 [INFO] running `"docker" "start" "-a" "990b82e964ee48bd0b3d3f48c3672e309ae1874a0df43be9b12e668f680715d5"` [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 0.06s [INFO] [stderr] Running /opt/crater/target/debug/deps/finch-e98bd6ace376b708 [INFO] [stdout] [INFO] [stdout] running 6 tests [INFO] [stdout] test filtering::test_filter_strands ... ok [INFO] [stdout] test filtering::test_filter_abundance ... ok [INFO] [stdout] test minhashes::test_longer_sequence ... ok [INFO] [stdout] test minhashes::test_minhashkmers ... ok [INFO] [stdout] test filtering::test_guess_filter_threshold ... ok [INFO] [stdout] test statistics::test_hist ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 6 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] [stderr] Running /opt/crater/target/debug/deps/finch-a3792003d842a572 [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] [stderr] Doc-tests finch [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] running `"docker" "inspect" "990b82e964ee48bd0b3d3f48c3672e309ae1874a0df43be9b12e668f680715d5"` [INFO] running `"docker" "rm" "-f" "990b82e964ee48bd0b3d3f48c3672e309ae1874a0df43be9b12e668f680715d5"` [INFO] [stdout] 990b82e964ee48bd0b3d3f48c3672e309ae1874a0df43be9b12e668f680715d5