[INFO] updating cached repository wheaton5/long_read_binner [INFO] running `"git" "fetch" "--all"` [INFO] [stdout] Fetching origin [INFO] [stderr] From git://github.com/wheaton5/long_read_binner [INFO] [stderr] * branch HEAD -> FETCH_HEAD [INFO] running `"git" "clone" "work/cache/sources/gh/wheaton5/long_read_binner" "work/ex/beta-1.38-1/sources/1.37.0/gh/wheaton5/long_read_binner"` [INFO] [stderr] Cloning into 'work/ex/beta-1.38-1/sources/1.37.0/gh/wheaton5/long_read_binner'... [INFO] [stderr] done. [INFO] running `"git" "clone" "work/cache/sources/gh/wheaton5/long_read_binner" "work/ex/beta-1.38-1/sources/beta-2019-08-13/gh/wheaton5/long_read_binner"` [INFO] [stderr] Cloning into 'work/ex/beta-1.38-1/sources/beta-2019-08-13/gh/wheaton5/long_read_binner'... [INFO] [stderr] done. [INFO] running `"git" "rev-parse" "HEAD"` [INFO] [stdout] e72d4e667fc1c4e41b1616f1924744f0d4e76bd7 [INFO] sha for GitHub repo wheaton5/long_read_binner: e72d4e667fc1c4e41b1616f1924744f0d4e76bd7 [INFO] validating manifest of wheaton5/long_read_binner on toolchain 1.37.0 [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+1.37.0" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] validating manifest of wheaton5/long_read_binner on toolchain beta-2019-08-13 [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+beta-2019-08-13" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] started frobbing wheaton5/long_read_binner [INFO] finished frobbing wheaton5/long_read_binner [INFO] frobbed toml for wheaton5/long_read_binner written to work/ex/beta-1.38-1/sources/1.37.0/gh/wheaton5/long_read_binner/Cargo.toml [INFO] started frobbing wheaton5/long_read_binner [INFO] finished frobbing wheaton5/long_read_binner [INFO] frobbed toml for wheaton5/long_read_binner written to work/ex/beta-1.38-1/sources/beta-2019-08-13/gh/wheaton5/long_read_binner/Cargo.toml [INFO] crate wheaton5/long_read_binner already has a lockfile, it will not be regenerated [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+1.37.0" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Updating git repository `https://github.com/wheaton5/dna_io.git` [INFO] [stderr] error: the lock file /mnt/big/crater/work/ex/beta-1.38-1/sources/1.37.0/gh/wheaton5/long_read_binner/Cargo.lock needs to be updated but --locked was passed to prevent this [INFO] the lockfile is outdated, regenerating it [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+1.37.0" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update"` [INFO] [stderr] Updating git repository `https://github.com/10XGenomics/rust-debruijn.git` [INFO] [stderr] Updating git repository `https://github.com/wheaton5/dna_io.git` [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+beta-2019-08-13" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update"` [INFO] [stderr] Updating git repository `https://github.com/10XGenomics/rust-debruijn.git` [INFO] [stderr] Updating git repository `https://github.com/wheaton5/dna_io.git` [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+1.37.0" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+beta-2019-08-13" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] testing wheaton5/long_read_binner against beta-2019-08-13 for beta-1.38-1 [INFO] running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/beta-1.38-1/worker-3/beta-2019-08-13:/opt/crater/target:rw,Z" "-v" "/mnt/big/crater/work/ex/beta-1.38-1/sources/beta-2019-08-13/gh/wheaton5/long_read_binner:/opt/crater/workdir:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/opt/crater/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/opt/crater/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/opt/crater/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/crater/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/crater/cargo-home" "-e" "RUSTUP_HOME=/opt/crater/rustup-home" "-w" "/opt/crater/workdir" "-m" "1536M" "--network" "none" "rustops/crates-build-env" "/opt/crater/cargo-home/bin/cargo" "+beta-2019-08-13" "build" "--frozen"` [INFO] [stdout] 8efe2d5677faecc60278212923600231e9d577906ac8944a986c34e6a2148a5b [INFO] running `"docker" "start" "-a" "8efe2d5677faecc60278212923600231e9d577906ac8944a986c34e6a2148a5b"` [INFO] [stderr] Compiling proc-macro2 v0.4.30 [INFO] [stderr] Compiling log v0.4.8 [INFO] [stderr] Compiling glob v0.3.0 [INFO] [stderr] Compiling syn v1.0.3 [INFO] [stderr] Compiling bindgen v0.51.0 [INFO] [stderr] Compiling serde v1.0.99 [INFO] [stderr] Compiling shlex v0.1.1 [INFO] [stderr] Compiling spin v0.4.10 [INFO] [stderr] Compiling ieee754 v0.2.6 [INFO] [stderr] Compiling linear-map v1.2.0 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling nom v4.2.3 [INFO] [stderr] Compiling num-rational v0.2.2 [INFO] [stderr] Compiling num-iter v0.1.39 [INFO] [stderr] Compiling num-complex v0.2.3 [INFO] [stderr] Compiling fs-utils v1.1.1 [INFO] [stderr] Compiling lzma-sys v0.1.14 [INFO] [stderr] Compiling libz-sys v1.0.25 [INFO] [stderr] Compiling itertools v0.8.0 [INFO] [stderr] Compiling rand_core v0.3.1 [INFO] [stderr] Compiling wyhash v0.3.0 [INFO] [stderr] Compiling concurrent-hashmap v0.2.2 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling rand v0.5.6 [INFO] [stderr] Compiling fxhash v0.2.1 [INFO] [stderr] Compiling clap v2.27.1 [INFO] [stderr] Compiling num-integer v0.1.41 [INFO] [stderr] Compiling clang-sys v0.28.1 [INFO] [stderr] Compiling failure v0.1.5 [INFO] [stderr] Compiling env_logger v0.6.2 [INFO] [stderr] Compiling quote v0.6.13 [INFO] [stderr] Compiling num-bigint v0.2.2 [INFO] [stderr] Compiling which v2.0.1 [INFO] [stderr] Compiling cexpr v0.3.5 [INFO] [stderr] Compiling num v0.2.0 [INFO] [stderr] Compiling serde_derive v1.0.99 [INFO] [stderr] Compiling rust-htslib v0.24.0 [INFO] [stderr] Compiling bio-types v0.5.1 [INFO] [stderr] Compiling serde_json v1.0.40 [INFO] [stderr] Compiling boomphf v0.5.2 [INFO] [stderr] Compiling debruijn v0.3.0 (https://github.com/10XGenomics/rust-debruijn.git#9c7caf19) [INFO] [stderr] Compiling dna_io v0.1.0 (https://github.com/wheaton5/dna_io.git#a640f47b) [INFO] [stderr] Compiling long_read_binner v0.1.0 (/opt/crater/workdir) [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:50:13 [INFO] [stderr] | [INFO] [stderr] 50 | let mut reader = dna_io::DnaReader::from_path(input); [INFO] [stderr] | ----^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_mut)]` on by default [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:100:13 [INFO] [stderr] | [INFO] [stderr] 100 | let mut file = BufReader::new(&f); [INFO] [stderr] | ----^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 2m 50s [INFO] running `"docker" "inspect" "8efe2d5677faecc60278212923600231e9d577906ac8944a986c34e6a2148a5b"` [INFO] running `"docker" "rm" "-f" "8efe2d5677faecc60278212923600231e9d577906ac8944a986c34e6a2148a5b"` [INFO] [stdout] 8efe2d5677faecc60278212923600231e9d577906ac8944a986c34e6a2148a5b [INFO] running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/beta-1.38-1/worker-3/beta-2019-08-13:/opt/crater/target:rw,Z" "-v" "/mnt/big/crater/work/ex/beta-1.38-1/sources/beta-2019-08-13/gh/wheaton5/long_read_binner:/opt/crater/workdir:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/opt/crater/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/opt/crater/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/opt/crater/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/crater/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/crater/cargo-home" "-e" "RUSTUP_HOME=/opt/crater/rustup-home" "-w" "/opt/crater/workdir" "-m" "1536M" "--network" "none" "rustops/crates-build-env" "/opt/crater/cargo-home/bin/cargo" "+beta-2019-08-13" "test" "--frozen" "--no-run"` [INFO] [stdout] 9eaa1b0438fdb274ed0428dc1f904bed9a134127eb55293653a8e80af53dec51 [INFO] running `"docker" "start" "-a" "9eaa1b0438fdb274ed0428dc1f904bed9a134127eb55293653a8e80af53dec51"` [INFO] [stderr] Compiling long_read_binner v0.1.0 (/opt/crater/workdir) [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:50:13 [INFO] [stderr] | [INFO] [stderr] 50 | let mut reader = dna_io::DnaReader::from_path(input); [INFO] [stderr] | ----^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_mut)]` on by default [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:100:13 [INFO] [stderr] | [INFO] [stderr] 100 | let mut file = BufReader::new(&f); [INFO] [stderr] | ----^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 1.48s [INFO] running `"docker" "inspect" "9eaa1b0438fdb274ed0428dc1f904bed9a134127eb55293653a8e80af53dec51"` [INFO] running `"docker" "rm" "-f" "9eaa1b0438fdb274ed0428dc1f904bed9a134127eb55293653a8e80af53dec51"` [INFO] [stdout] 9eaa1b0438fdb274ed0428dc1f904bed9a134127eb55293653a8e80af53dec51 [INFO] running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/beta-1.38-1/worker-3/beta-2019-08-13:/opt/crater/target:rw,Z" "-v" "/mnt/big/crater/work/ex/beta-1.38-1/sources/beta-2019-08-13/gh/wheaton5/long_read_binner:/opt/crater/workdir:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/opt/crater/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/opt/crater/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/opt/crater/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/crater/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/crater/cargo-home" "-e" "RUSTUP_HOME=/opt/crater/rustup-home" "-w" "/opt/crater/workdir" "-m" "1536M" "--network" "none" "rustops/crates-build-env" "/opt/crater/cargo-home/bin/cargo" "+beta-2019-08-13" "test" "--frozen"` [INFO] [stdout] 06265e031d657bb0fbe2318676fd469007969ed198095540f63a0497973ceae4 [INFO] running `"docker" "start" "-a" "06265e031d657bb0fbe2318676fd469007969ed198095540f63a0497973ceae4"` [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 0.17s [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] [stderr] Running /opt/crater/target/debug/deps/long_read_binner-95c62343cfa1fcdc [INFO] running `"docker" "inspect" "06265e031d657bb0fbe2318676fd469007969ed198095540f63a0497973ceae4"` [INFO] running `"docker" "rm" "-f" "06265e031d657bb0fbe2318676fd469007969ed198095540f63a0497973ceae4"` [INFO] [stdout] 06265e031d657bb0fbe2318676fd469007969ed198095540f63a0497973ceae4