[INFO] updating cached repository stjude/fqlib [INFO] running `"git" "fetch" "--all"` [INFO] [stdout] Fetching origin [INFO] [stderr] From git://github.com/stjude/fqlib [INFO] [stderr] * branch HEAD -> FETCH_HEAD [INFO] running `"git" "clone" "work/cache/sources/gh/stjude/fqlib" "work/ex/beta-1.38-1/sources/1.37.0/gh/stjude/fqlib"` [INFO] [stderr] Cloning into 'work/ex/beta-1.38-1/sources/1.37.0/gh/stjude/fqlib'... [INFO] [stderr] done. [INFO] running `"git" "clone" "work/cache/sources/gh/stjude/fqlib" "work/ex/beta-1.38-1/sources/beta-2019-08-13/gh/stjude/fqlib"` [INFO] [stderr] Cloning into 'work/ex/beta-1.38-1/sources/beta-2019-08-13/gh/stjude/fqlib'... [INFO] [stderr] done. [INFO] running `"git" "rev-parse" "HEAD"` [INFO] [stdout] 9016e2a91e340c5e3c02b63f1cc6055153816f68 [INFO] sha for GitHub repo stjude/fqlib: 9016e2a91e340c5e3c02b63f1cc6055153816f68 [INFO] validating manifest of stjude/fqlib on toolchain 1.37.0 [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+1.37.0" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] validating manifest of stjude/fqlib on toolchain beta-2019-08-13 [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+beta-2019-08-13" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] started frobbing stjude/fqlib [INFO] finished frobbing stjude/fqlib [INFO] frobbed toml for stjude/fqlib written to work/ex/beta-1.38-1/sources/1.37.0/gh/stjude/fqlib/Cargo.toml [INFO] started frobbing stjude/fqlib [INFO] finished frobbing stjude/fqlib [INFO] frobbed toml for stjude/fqlib written to work/ex/beta-1.38-1/sources/beta-2019-08-13/gh/stjude/fqlib/Cargo.toml [INFO] crate stjude/fqlib already has a lockfile, it will not be regenerated [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+1.37.0" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+beta-2019-08-13" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] testing stjude/fqlib against beta-2019-08-13 for beta-1.38-1 [INFO] running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/beta-1.38-1/worker-3/beta-2019-08-13:/opt/crater/target:rw,Z" "-v" "/mnt/big/crater/work/ex/beta-1.38-1/sources/beta-2019-08-13/gh/stjude/fqlib:/opt/crater/workdir:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/opt/crater/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/opt/crater/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/opt/crater/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/crater/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/crater/cargo-home" "-e" "RUSTUP_HOME=/opt/crater/rustup-home" "-w" "/opt/crater/workdir" "-m" "1536M" "--network" "none" "rustops/crates-build-env" "/opt/crater/cargo-home/bin/cargo" "+beta-2019-08-13" "build" "--frozen"` [INFO] [stdout] a44bfb91b8e0fc7549f13e0aa5a74c76a1c3f4adc4fe940cd71cc29b2f7e6735 [INFO] running `"docker" "start" "-a" "a44bfb91b8e0fc7549f13e0aa5a74c76a1c3f4adc4fe940cd71cc29b2f7e6735"` [INFO] [stderr] Compiling proc-macro2 v0.4.30 [INFO] [stderr] Compiling memchr v2.2.0 [INFO] [stderr] Compiling miniz-sys v0.1.12 [INFO] [stderr] Compiling bloom v0.1.0 (https://github.com/zaeleus/bloom.git#b8c48b9e) [INFO] [stderr] Compiling chrono v0.4.6 [INFO] [stderr] Compiling flate2 v1.0.7 [INFO] [stderr] Compiling csv-core v0.1.5 [INFO] [stderr] Compiling aho-corasick v0.7.3 [INFO] [stderr] Compiling csv v1.0.7 [INFO] [stderr] Compiling quote v0.6.12 [INFO] [stderr] Compiling regex v1.1.6 [INFO] [stderr] Compiling syn v0.15.34 [INFO] [stderr] Compiling noodles v0.1.0 (https://github.com/zaeleus/noodles.git#29afcb40) [INFO] [stderr] Compiling env_logger v0.6.1 [INFO] [stderr] Compiling git-testament-derive v0.1.7 [INFO] [stderr] Compiling git-testament v0.1.6 [INFO] [stderr] Compiling fqlib v0.2.0 (/opt/crater/workdir) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 41.58s [INFO] running `"docker" "inspect" "a44bfb91b8e0fc7549f13e0aa5a74c76a1c3f4adc4fe940cd71cc29b2f7e6735"` [INFO] running `"docker" "rm" "-f" "a44bfb91b8e0fc7549f13e0aa5a74c76a1c3f4adc4fe940cd71cc29b2f7e6735"` [INFO] [stdout] a44bfb91b8e0fc7549f13e0aa5a74c76a1c3f4adc4fe940cd71cc29b2f7e6735 [INFO] running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/beta-1.38-1/worker-3/beta-2019-08-13:/opt/crater/target:rw,Z" "-v" "/mnt/big/crater/work/ex/beta-1.38-1/sources/beta-2019-08-13/gh/stjude/fqlib:/opt/crater/workdir:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/opt/crater/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/opt/crater/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/opt/crater/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/crater/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/crater/cargo-home" "-e" "RUSTUP_HOME=/opt/crater/rustup-home" "-w" "/opt/crater/workdir" "-m" "1536M" "--network" "none" "rustops/crates-build-env" "/opt/crater/cargo-home/bin/cargo" "+beta-2019-08-13" "test" "--frozen" "--no-run"` [INFO] [stdout] eba6d33a5e5966face858aa00ffc4b3b88fc69dbc16b51de8605937d8e87689b [INFO] running `"docker" "start" "-a" "eba6d33a5e5966face858aa00ffc4b3b88fc69dbc16b51de8605937d8e87689b"` [INFO] [stderr] Compiling fqlib v0.2.0 (/opt/crater/workdir) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 4.26s [INFO] running `"docker" "inspect" "eba6d33a5e5966face858aa00ffc4b3b88fc69dbc16b51de8605937d8e87689b"` [INFO] running `"docker" "rm" "-f" "eba6d33a5e5966face858aa00ffc4b3b88fc69dbc16b51de8605937d8e87689b"` [INFO] [stdout] eba6d33a5e5966face858aa00ffc4b3b88fc69dbc16b51de8605937d8e87689b [INFO] running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/beta-1.38-1/worker-3/beta-2019-08-13:/opt/crater/target:rw,Z" "-v" "/mnt/big/crater/work/ex/beta-1.38-1/sources/beta-2019-08-13/gh/stjude/fqlib:/opt/crater/workdir:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/opt/crater/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/opt/crater/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/opt/crater/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/crater/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/crater/cargo-home" "-e" "RUSTUP_HOME=/opt/crater/rustup-home" "-w" "/opt/crater/workdir" "-m" "1536M" "--network" "none" "rustops/crates-build-env" "/opt/crater/cargo-home/bin/cargo" "+beta-2019-08-13" "test" "--frozen"` [INFO] [stdout] 6bcb882d22b997cb92d7a5a6d72532fe34acaeccc9e0d7641815f18d62433d6b [INFO] running `"docker" "start" "-a" "6bcb882d22b997cb92d7a5a6d72532fe34acaeccc9e0d7641815f18d62433d6b"` [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 0.16s [INFO] [stderr] Running /opt/crater/target/debug/deps/fqlib-597614daae4dfeea [INFO] [stdout] [INFO] [stdout] running 45 tests [INFO] [stdout] test commands::filter::tests::test_read_names ... ok [INFO] [stdout] test commands::filter::tests::test_name_id ... ok [INFO] [stdout] test commands::filter::tests::test_copy_filtered ... ok [INFO] [stdout] test commands::lint::tests::test_build_error_message ... ok [INFO] [stdout] test validators::paired::names::tests::test_code ... ok [INFO] [stdout] test validators::paired::names::tests::test_level ... ok [INFO] [stdout] test distributions::tests::test_sample ... ok [INFO] [stdout] test generator::tests::test_next_block ... ok [INFO] [stdout] test commands::lint::tests::test_build_error_message_with_no_col_no ... ok [INFO] [stdout] test validators::paired::names::tests::test_validate ... ok [INFO] [stdout] test validators::single::alphabet::tests::test_code ... ok [INFO] [stdout] test validators::paired::names::tests::test_name ... ok [INFO] [stdout] test validators::single::alphabet::tests::test_name ... ok [INFO] [stdout] test validators::single::alphabet::tests::test_new ... ok [INFO] [stdout] test validators::single::alphabet::tests::test_validate ... ok [INFO] [stdout] test validators::single::complete::tests::test_code ... ok [INFO] [stdout] test validators::single::complete::tests::test_level ... ok [INFO] [stdout] test validators::single::complete::tests::test_name ... ok [INFO] [stdout] test validators::single::alphabet::tests::test_level ... ok [INFO] [stdout] test validators::single::complete::tests::test_validate ... ok [INFO] [stdout] test validators::single::consistent_seq_qual::tests::test_code ... ok [INFO] [stdout] test validators::single::consistent_seq_qual::tests::test_level ... ok [INFO] [stdout] test validators::single::consistent_seq_qual::tests::test_name ... ok [INFO] [stdout] test validators::single::consistent_seq_qual::tests::test_validate ... ok [INFO] [stdout] test validators::single::duplicate_name::tests::test_code ... ok [INFO] [stdout] test validators::single::duplicate_name::tests::test_is_empty ... ok [INFO] [stdout] test validators::single::duplicate_name::tests::test_name ... ok [INFO] [stdout] test validators::single::name::tests::test_code ... ok [INFO] [stdout] test validators::single::name::tests::test_level ... ok [INFO] [stdout] test validators::single::name::tests::test_name ... ok [INFO] [stdout] test validators::single::name::tests::test_validate ... ok [INFO] [stdout] test validators::single::plus_line::tests::test_code ... ok [INFO] [stdout] test validators::single::plus_line::tests::test_level ... ok [INFO] [stdout] test validators::single::plus_line::tests::test_name ... ok [INFO] [stdout] test validators::single::quality_string::tests::test_validate ... ok [INFO] [stdout] test validators::tests::test_filter_paired_read_validators ... ok [INFO] [stdout] test validators::single::plus_line::tests::test_validate ... ok [INFO] [stdout] test validators::single::quality_string::tests::test_code ... ok [INFO] [stdout] test validators::single::quality_string::tests::test_level ... ok [INFO] [stdout] test validators::single::quality_string::tests::test_name ... ok [INFO] [stdout] test validators::tests::test_filter_paired_read_validators_with_disabled_validators ... ok [INFO] [stdout] test validators::tests::test_filter_single_read_validators ... ok [INFO] [stdout] test validators::tests::test_filter_single_read_validators_with_disabled_validators ... ok [INFO] [stdout] test validators::tests::test_filter_validators ... ok [INFO] [stdout] test validators::single::duplicate_name::tests::test_level ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 45 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] [stderr] Running /opt/crater/target/debug/deps/fq-9366b67145594286 [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] [stderr] Doc-tests fqlib [INFO] [stdout] [INFO] [stdout] running 10 tests [INFO] [stdout] test src/generator.rs - generator::Generator::next_block_with_name (line 134) ... ok [INFO] [stdout] test src/generator.rs - generator::Generator::new (line 102) ... ok [INFO] [stdout] test src/generator.rs - generator::Generator::from_seed (line 83) ... ok [INFO] [stdout] test src/generator.rs - generator::Generator::from_rng (line 42) ... ok [INFO] [stdout] test src/distributions.rs - distributions::Character (line 8) ... ok [INFO] [stdout] test src/validators/single/duplicate_name.rs - validators::single::duplicate_name::DuplicateNameValidator (line 20) ... ok [INFO] [stdout] test src/generator.rs - generator::Generator::next_block (line 114) ... ok [INFO] [stdout] test src/record.rs - record::reset (line 13) ... ok [INFO] [stdout] test src/validators/single/duplicate_name.rs - validators::single::duplicate_name::DuplicateNameValidator::is_empty (line 86) ... ok [INFO] [stdout] test src/validators/single/duplicate_name.rs - validators::single::duplicate_name::DuplicateNameValidator::insert (line 62) ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 10 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] running `"docker" "inspect" "6bcb882d22b997cb92d7a5a6d72532fe34acaeccc9e0d7641815f18d62433d6b"` [INFO] running `"docker" "rm" "-f" "6bcb882d22b997cb92d7a5a6d72532fe34acaeccc9e0d7641815f18d62433d6b"` [INFO] [stdout] 6bcb882d22b997cb92d7a5a6d72532fe34acaeccc9e0d7641815f18d62433d6b