[INFO] updating cached repository mal2017/csc
[INFO] running `"git" "fetch" "--all"`
[INFO] [stdout] Fetching origin
[INFO] [stderr] From git://github.com/mal2017/csc
[INFO] [stderr]  * branch            HEAD       -> FETCH_HEAD
[INFO] running `"git" "clone" "work/cache/sources/gh/mal2017/csc" "work/ex/beta-1.38-1/sources/1.37.0/gh/mal2017/csc"`
[INFO] [stderr] Cloning into 'work/ex/beta-1.38-1/sources/1.37.0/gh/mal2017/csc'...
[INFO] [stderr] done.
[INFO] running `"git" "clone" "work/cache/sources/gh/mal2017/csc" "work/ex/beta-1.38-1/sources/beta-2019-08-13/gh/mal2017/csc"`
[INFO] [stderr] Cloning into 'work/ex/beta-1.38-1/sources/beta-2019-08-13/gh/mal2017/csc'...
[INFO] [stderr] done.
[INFO] running `"git" "rev-parse" "HEAD"`
[INFO] [stdout] 4520455aaa17b25be16d988fdca80cce940a390a
[INFO] sha for GitHub repo mal2017/csc: 4520455aaa17b25be16d988fdca80cce940a390a
[INFO] validating manifest of mal2017/csc on toolchain 1.37.0
[INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+1.37.0" "read-manifest" "--manifest-path" "Cargo.toml"`
[INFO] validating manifest of mal2017/csc on toolchain beta-2019-08-13
[INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+beta-2019-08-13" "read-manifest" "--manifest-path" "Cargo.toml"`
[INFO] started frobbing mal2017/csc
[INFO] finished frobbing mal2017/csc
[INFO] frobbed toml for mal2017/csc written to work/ex/beta-1.38-1/sources/1.37.0/gh/mal2017/csc/Cargo.toml
[INFO] started frobbing mal2017/csc
[INFO] finished frobbing mal2017/csc
[INFO] frobbed toml for mal2017/csc written to work/ex/beta-1.38-1/sources/beta-2019-08-13/gh/mal2017/csc/Cargo.toml
[INFO] crate mal2017/csc already has a lockfile, it will not be regenerated
[INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+1.37.0" "fetch" "--locked" "--manifest-path" "Cargo.toml"`
[INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+beta-2019-08-13" "fetch" "--locked" "--manifest-path" "Cargo.toml"`
[INFO] testing mal2017/csc against beta-2019-08-13 for beta-1.38-1
[INFO] running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/beta-1.38-1/worker-4/beta-2019-08-13:/opt/crater/target:rw,Z" "-v" "/mnt/big/crater/work/ex/beta-1.38-1/sources/beta-2019-08-13/gh/mal2017/csc:/opt/crater/workdir:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/opt/crater/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/opt/crater/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/opt/crater/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/crater/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/crater/cargo-home" "-e" "RUSTUP_HOME=/opt/crater/rustup-home" "-w" "/opt/crater/workdir" "-m" "1536M" "--network" "none" "rustops/crates-build-env" "/opt/crater/cargo-home/bin/cargo" "+beta-2019-08-13" "build" "--frozen"`
[INFO] [stdout] 04fc5017309b5cdbe608037c42a1df58347a2f643b95fceb6d16b318c0b6140f
[INFO] running `"docker" "start" "-a" "04fc5017309b5cdbe608037c42a1df58347a2f643b95fceb6d16b318c0b6140f"`
[INFO] [stderr]    Compiling syn v0.15.31
[INFO] [stderr]    Compiling memchr v2.2.0
[INFO] [stderr]    Compiling bindgen v0.36.1
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]    Compiling bio v0.25.0
[INFO] [stderr]    Compiling ieee754 v0.2.6
[INFO] [stderr]    Compiling linear-map v1.2.0
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling bzip2-sys v0.1.7
[INFO] [stderr]    Compiling clang-sys v0.22.0
[INFO] [stderr]    Compiling fs-utils v1.1.0
[INFO] [stderr]    Compiling lzma-sys v0.1.14
[INFO] [stderr]    Compiling libz-sys v1.0.25
[INFO] [stderr]    Compiling itertools v0.7.11
[INFO] [stderr]    Compiling itertools v0.6.5
[INFO] [stderr]    Compiling bv v0.10.0
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling memchr v1.0.2
[INFO] [stderr]    Compiling which v1.0.5
[INFO] [stderr]    Compiling itertools-num v0.1.3
[INFO] [stderr]    Compiling nom v3.2.1
[INFO] [stderr]    Compiling statrs v0.9.0
[INFO] [stderr]    Compiling aho-corasick v0.7.3
[INFO] [stderr]    Compiling aho-corasick v0.6.10
[INFO] [stderr]    Compiling csv-core v0.1.5
[INFO] [stderr]    Compiling ndarray v0.12.1
[INFO] [stderr]    Compiling regex v0.2.11
[INFO] [stderr]    Compiling cexpr v0.2.3
[INFO] [stderr]    Compiling regex v1.1.5
[INFO] [stderr]    Compiling serde_derive v1.0.90
[INFO] [stderr]    Compiling env_logger v0.5.13
[INFO] [stderr]    Compiling serde v1.0.90
[INFO] [stderr]    Compiling vec_map v0.8.1
[INFO] [stderr]    Compiling multimap v0.4.0
[INFO] [stderr]    Compiling csv v1.0.7
[INFO] [stderr]    Compiling bio-types v0.4.0
[INFO] [stderr]    Compiling clap v2.32.0
[INFO] [stderr]    Compiling rust-htslib v0.22.0
[INFO] [stderr]    Compiling ngslib v0.1.0 (https://github.com/mal2017/ngslib.git?tag=0.1.0-alpha.2#b34385bf)
[INFO] [stderr]    Compiling cutsites v0.1.0 (/opt/crater/workdir)
[INFO] [stderr] warning: unused import: `bio::io::bed::*`
[INFO] [stderr]   --> src/main.rs:10:5
[INFO] [stderr]    |
[INFO] [stderr] 10 | use bio::io::bed::*;
[INFO] [stderr]    |     ^^^^^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `#[warn(unused_imports)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: unused import: `bio::io::bed::Record`
[INFO] [stderr]   --> src/main.rs:11:5
[INFO] [stderr]    |
[INFO] [stderr] 11 | use bio::io::bed::Record;
[INFO] [stderr]    |     ^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: unused import: `itertools::Itertools`
[INFO] [stderr]   --> src/main.rs:19:5
[INFO] [stderr]    |
[INFO] [stderr] 19 | use itertools::Itertools;
[INFO] [stderr]    |     ^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: unused import: `ArgGroup`
[INFO] [stderr]   --> src/main.rs:25:26
[INFO] [stderr]    |
[INFO] [stderr] 25 |     use clap::{App, Arg, ArgGroup};
[INFO] [stderr]    |                          ^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: variable does not need to be mutable
[INFO] [stderr]    --> src/main.rs:101:9
[INFO] [stderr]     |
[INFO] [stderr] 101 |     let mut bam = bam::IndexedReader::from_path(bp).unwrap();
[INFO] [stderr]     |         ----^^^
[INFO] [stderr]     |         |
[INFO] [stderr]     |         help: remove this `mut`
[INFO] [stderr]     |
[INFO] [stderr]     = note: `#[warn(unused_mut)]` on by default
[INFO] [stderr] 
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 2m 34s
[INFO] running `"docker" "inspect" "04fc5017309b5cdbe608037c42a1df58347a2f643b95fceb6d16b318c0b6140f"`
[INFO] running `"docker" "rm" "-f" "04fc5017309b5cdbe608037c42a1df58347a2f643b95fceb6d16b318c0b6140f"`
[INFO] [stdout] 04fc5017309b5cdbe608037c42a1df58347a2f643b95fceb6d16b318c0b6140f
[INFO] running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/beta-1.38-1/worker-4/beta-2019-08-13:/opt/crater/target:rw,Z" "-v" "/mnt/big/crater/work/ex/beta-1.38-1/sources/beta-2019-08-13/gh/mal2017/csc:/opt/crater/workdir:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/opt/crater/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/opt/crater/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/opt/crater/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/crater/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/crater/cargo-home" "-e" "RUSTUP_HOME=/opt/crater/rustup-home" "-w" "/opt/crater/workdir" "-m" "1536M" "--network" "none" "rustops/crates-build-env" "/opt/crater/cargo-home/bin/cargo" "+beta-2019-08-13" "test" "--frozen" "--no-run"`
[INFO] [stdout] d9b6f7db15639e3d0bff03e837983476bcbf8ad68d2bb3e4f6c04c92429c5607
[INFO] running `"docker" "start" "-a" "d9b6f7db15639e3d0bff03e837983476bcbf8ad68d2bb3e4f6c04c92429c5607"`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]    Compiling cutsites v0.1.0 (/opt/crater/workdir)
[INFO] [stderr] warning: unused import: `bio::io::bed::*`
[INFO] [stderr]   --> src/main.rs:10:5
[INFO] [stderr]    |
[INFO] [stderr] 10 | use bio::io::bed::*;
[INFO] [stderr]    |     ^^^^^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `#[warn(unused_imports)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: unused import: `bio::io::bed::Record`
[INFO] [stderr]   --> src/main.rs:11:5
[INFO] [stderr]    |
[INFO] [stderr] 11 | use bio::io::bed::Record;
[INFO] [stderr]    |     ^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: unused import: `itertools::Itertools`
[INFO] [stderr]   --> src/main.rs:19:5
[INFO] [stderr]    |
[INFO] [stderr] 19 | use itertools::Itertools;
[INFO] [stderr]    |     ^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: unused import: `ArgGroup`
[INFO] [stderr]   --> src/main.rs:25:26
[INFO] [stderr]    |
[INFO] [stderr] 25 |     use clap::{App, Arg, ArgGroup};
[INFO] [stderr]    |                          ^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: variable does not need to be mutable
[INFO] [stderr]    --> src/main.rs:101:9
[INFO] [stderr]     |
[INFO] [stderr] 101 |     let mut bam = bam::IndexedReader::from_path(bp).unwrap();
[INFO] [stderr]     |         ----^^^
[INFO] [stderr]     |         |
[INFO] [stderr]     |         help: remove this `mut`
[INFO] [stderr]     |
[INFO] [stderr]     = note: `#[warn(unused_mut)]` on by default
[INFO] [stderr] 
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 2.34s
[INFO] running `"docker" "inspect" "d9b6f7db15639e3d0bff03e837983476bcbf8ad68d2bb3e4f6c04c92429c5607"`
[INFO] running `"docker" "rm" "-f" "d9b6f7db15639e3d0bff03e837983476bcbf8ad68d2bb3e4f6c04c92429c5607"`
[INFO] [stdout] d9b6f7db15639e3d0bff03e837983476bcbf8ad68d2bb3e4f6c04c92429c5607
[INFO] running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/beta-1.38-1/worker-4/beta-2019-08-13:/opt/crater/target:rw,Z" "-v" "/mnt/big/crater/work/ex/beta-1.38-1/sources/beta-2019-08-13/gh/mal2017/csc:/opt/crater/workdir:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/opt/crater/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/opt/crater/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/opt/crater/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/crater/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/crater/cargo-home" "-e" "RUSTUP_HOME=/opt/crater/rustup-home" "-w" "/opt/crater/workdir" "-m" "1536M" "--network" "none" "rustops/crates-build-env" "/opt/crater/cargo-home/bin/cargo" "+beta-2019-08-13" "test" "--frozen"`
[INFO] [stdout] 7b5e8d1134dc940e69644b7bddd358f90aa463ad3dbf032a396a83ee9d83f98b
[INFO] running `"docker" "start" "-a" "7b5e8d1134dc940e69644b7bddd358f90aa463ad3dbf032a396a83ee9d83f98b"`
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 0.15s
[INFO] [stderr]      Running /opt/crater/target/debug/deps/cutsites-54c0d3aadd676b86
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
[INFO] [stdout] 
[INFO] running `"docker" "inspect" "7b5e8d1134dc940e69644b7bddd358f90aa463ad3dbf032a396a83ee9d83f98b"`
[INFO] running `"docker" "rm" "-f" "7b5e8d1134dc940e69644b7bddd358f90aa463ad3dbf032a396a83ee9d83f98b"`
[INFO] [stdout] 7b5e8d1134dc940e69644b7bddd358f90aa463ad3dbf032a396a83ee9d83f98b