[INFO] updating cached repository TuBieJun/stat_mut_sampleratio [INFO] running `"git" "fetch" "--all"` [INFO] [stdout] Fetching origin [INFO] [stderr] From git://github.com/TuBieJun/stat_mut_sampleratio [INFO] [stderr] * branch HEAD -> FETCH_HEAD [INFO] running `"git" "clone" "work/cache/sources/gh/TuBieJun/stat_mut_sampleratio" "work/ex/beta-1.38-1/sources/1.37.0/gh/TuBieJun/stat_mut_sampleratio"` [INFO] [stderr] Cloning into 'work/ex/beta-1.38-1/sources/1.37.0/gh/TuBieJun/stat_mut_sampleratio'... [INFO] [stderr] done. [INFO] running `"git" "clone" "work/cache/sources/gh/TuBieJun/stat_mut_sampleratio" "work/ex/beta-1.38-1/sources/beta-2019-08-13/gh/TuBieJun/stat_mut_sampleratio"` [INFO] [stderr] Cloning into 'work/ex/beta-1.38-1/sources/beta-2019-08-13/gh/TuBieJun/stat_mut_sampleratio'... [INFO] [stderr] done. [INFO] running `"git" "rev-parse" "HEAD"` [INFO] [stdout] 0163827d32c94da365c78519e8ce537f7b7a211c [INFO] sha for GitHub repo TuBieJun/stat_mut_sampleratio: 0163827d32c94da365c78519e8ce537f7b7a211c [INFO] validating manifest of TuBieJun/stat_mut_sampleratio on toolchain 1.37.0 [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+1.37.0" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] validating manifest of TuBieJun/stat_mut_sampleratio on toolchain beta-2019-08-13 [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+beta-2019-08-13" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] started frobbing TuBieJun/stat_mut_sampleratio [INFO] finished frobbing TuBieJun/stat_mut_sampleratio [INFO] frobbed toml for TuBieJun/stat_mut_sampleratio written to work/ex/beta-1.38-1/sources/1.37.0/gh/TuBieJun/stat_mut_sampleratio/Cargo.toml [INFO] started frobbing TuBieJun/stat_mut_sampleratio [INFO] finished frobbing TuBieJun/stat_mut_sampleratio [INFO] frobbed toml for TuBieJun/stat_mut_sampleratio written to work/ex/beta-1.38-1/sources/beta-2019-08-13/gh/TuBieJun/stat_mut_sampleratio/Cargo.toml [INFO] crate TuBieJun/stat_mut_sampleratio already has a lockfile, it will not be regenerated [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+1.37.0" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+beta-2019-08-13" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] testing TuBieJun/stat_mut_sampleratio against beta-2019-08-13 for beta-1.38-1 [INFO] running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/beta-1.38-1/worker-7/beta-2019-08-13:/opt/crater/target:rw,Z" "-v" "/mnt/big/crater/work/ex/beta-1.38-1/sources/beta-2019-08-13/gh/TuBieJun/stat_mut_sampleratio:/opt/crater/workdir:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/opt/crater/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/opt/crater/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/opt/crater/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/crater/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/crater/cargo-home" "-e" "RUSTUP_HOME=/opt/crater/rustup-home" "-w" "/opt/crater/workdir" "-m" "1536M" "--network" "none" "rustops/crates-build-env" "/opt/crater/cargo-home/bin/cargo" "+beta-2019-08-13" "build" "--frozen"` [INFO] [stdout] 73b82f56484e7845fe68c7c72f0b1489ae0bbe565ad823df9ee5c58626e2f67f [INFO] running `"docker" "start" "-a" "73b82f56484e7845fe68c7c72f0b1489ae0bbe565ad823df9ee5c58626e2f67f"` [INFO] [stderr] Compiling atty v0.2.6 [INFO] [stderr] Compiling clap v2.29.2 [INFO] [stderr] Compiling stat_germline_pos v0.1.0 (/opt/crater/workdir) [INFO] [stderr] warning: unused import: `SubCommand` [INFO] [stderr] --> src/main.rs:9:22 [INFO] [stderr] | [INFO] [stderr] 9 | use clap::{Arg, App, SubCommand}; [INFO] [stderr] | ^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_imports)]` on by default [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:18:9 [INFO] [stderr] | [INFO] [stderr] 18 | let mut f = File::open(vcf_l) [INFO] [stderr] | ----^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_mut)]` on by default [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:40:21 [INFO] [stderr] | [INFO] [stderr] 40 | let mut dp_info:Vec<&str>; [INFO] [stderr] | ----^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:58:25 [INFO] [stderr] | [INFO] [stderr] 58 | let mut n_index:usize; [INFO] [stderr] | ----^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: variable `D_germline` should have a snake case name [INFO] [stderr] --> src/main.rs:13:13 [INFO] [stderr] | [INFO] [stderr] 13 | D_germline:&mut HashMap>) -> u32 { [INFO] [stderr] | ^^^^^^^^^^ help: convert the identifier to snake case: `d_germline` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(non_snake_case)]` on by default [INFO] [stderr] [INFO] [stderr] warning: variable `D_germline` should have a snake case name [INFO] [stderr] --> src/main.rs:96:53 [INFO] [stderr] | [INFO] [stderr] 96 | fn out_info(out_file:&str, panel_list:&Vec, D_germline:&HashMap>, sample_num_list:&Vec) { [INFO] [stderr] | ^^^^^^^^^^ help: convert the identifier to snake case: `d_germline` [INFO] [stderr] [INFO] [stderr] warning: unused `std::result::Result` that must be used [INFO] [stderr] --> src/main.rs:100:5 [INFO] [stderr] | [INFO] [stderr] 100 | writer.write(header.as_bytes()); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_must_use)]` on by default [INFO] [stderr] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stderr] [INFO] [stderr] warning: unused `std::result::Result` that must be used [INFO] [stderr] --> src/main.rs:112:9 [INFO] [stderr] | [INFO] [stderr] 112 | writer.write(info.as_bytes()); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stderr] [INFO] [stderr] warning: variable `D_germline` should have a snake case name [INFO] [stderr] --> src/main.rs:155:13 [INFO] [stderr] | [INFO] [stderr] 155 | let mut D_germline:HashMap> = HashMap::new(); [INFO] [stderr] | ^^^^^^^^^^ help: convert the identifier to snake case: `d_germline` [INFO] [stderr] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 18.96s [INFO] running `"docker" "inspect" "73b82f56484e7845fe68c7c72f0b1489ae0bbe565ad823df9ee5c58626e2f67f"` [INFO] running `"docker" "rm" "-f" "73b82f56484e7845fe68c7c72f0b1489ae0bbe565ad823df9ee5c58626e2f67f"` [INFO] [stdout] 73b82f56484e7845fe68c7c72f0b1489ae0bbe565ad823df9ee5c58626e2f67f [INFO] running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/beta-1.38-1/worker-7/beta-2019-08-13:/opt/crater/target:rw,Z" "-v" "/mnt/big/crater/work/ex/beta-1.38-1/sources/beta-2019-08-13/gh/TuBieJun/stat_mut_sampleratio:/opt/crater/workdir:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/opt/crater/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/opt/crater/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/opt/crater/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/crater/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/crater/cargo-home" "-e" "RUSTUP_HOME=/opt/crater/rustup-home" "-w" "/opt/crater/workdir" "-m" "1536M" "--network" "none" "rustops/crates-build-env" "/opt/crater/cargo-home/bin/cargo" "+beta-2019-08-13" "test" "--frozen" "--no-run"` [INFO] [stdout] 29e2e7401a80728be8a2e298790879512e63151b261537c89f6316ebd1c37059 [INFO] running `"docker" "start" "-a" "29e2e7401a80728be8a2e298790879512e63151b261537c89f6316ebd1c37059"` [INFO] [stderr] Compiling stat_germline_pos v0.1.0 (/opt/crater/workdir) [INFO] [stderr] warning: unused import: `SubCommand` [INFO] [stderr] --> src/main.rs:9:22 [INFO] [stderr] | [INFO] [stderr] 9 | use clap::{Arg, App, SubCommand}; [INFO] [stderr] | ^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_imports)]` on by default [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:18:9 [INFO] [stderr] | [INFO] [stderr] 18 | let mut f = File::open(vcf_l) [INFO] [stderr] | ----^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_mut)]` on by default [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:40:21 [INFO] [stderr] | [INFO] [stderr] 40 | let mut dp_info:Vec<&str>; [INFO] [stderr] | ----^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:58:25 [INFO] [stderr] | [INFO] [stderr] 58 | let mut n_index:usize; [INFO] [stderr] | ----^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: variable `D_germline` should have a snake case name [INFO] [stderr] --> src/main.rs:13:13 [INFO] [stderr] | [INFO] [stderr] 13 | D_germline:&mut HashMap>) -> u32 { [INFO] [stderr] | ^^^^^^^^^^ help: convert the identifier to snake case: `d_germline` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(non_snake_case)]` on by default [INFO] [stderr] [INFO] [stderr] warning: variable `D_germline` should have a snake case name [INFO] [stderr] --> src/main.rs:96:53 [INFO] [stderr] | [INFO] [stderr] 96 | fn out_info(out_file:&str, panel_list:&Vec, D_germline:&HashMap>, sample_num_list:&Vec) { [INFO] [stderr] | ^^^^^^^^^^ help: convert the identifier to snake case: `d_germline` [INFO] [stderr] [INFO] [stderr] warning: unused `std::result::Result` that must be used [INFO] [stderr] --> src/main.rs:100:5 [INFO] [stderr] | [INFO] [stderr] 100 | writer.write(header.as_bytes()); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_must_use)]` on by default [INFO] [stderr] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stderr] [INFO] [stderr] warning: unused `std::result::Result` that must be used [INFO] [stderr] --> src/main.rs:112:9 [INFO] [stderr] | [INFO] [stderr] 112 | writer.write(info.as_bytes()); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stderr] [INFO] [stderr] warning: variable `D_germline` should have a snake case name [INFO] [stderr] --> src/main.rs:155:13 [INFO] [stderr] | [INFO] [stderr] 155 | let mut D_germline:HashMap> = HashMap::new(); [INFO] [stderr] | ^^^^^^^^^^ help: convert the identifier to snake case: `d_germline` [INFO] [stderr] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 0.88s [INFO] running `"docker" "inspect" "29e2e7401a80728be8a2e298790879512e63151b261537c89f6316ebd1c37059"` [INFO] running `"docker" "rm" "-f" "29e2e7401a80728be8a2e298790879512e63151b261537c89f6316ebd1c37059"` [INFO] [stdout] 29e2e7401a80728be8a2e298790879512e63151b261537c89f6316ebd1c37059 [INFO] running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/beta-1.38-1/worker-7/beta-2019-08-13:/opt/crater/target:rw,Z" "-v" "/mnt/big/crater/work/ex/beta-1.38-1/sources/beta-2019-08-13/gh/TuBieJun/stat_mut_sampleratio:/opt/crater/workdir:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/opt/crater/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/opt/crater/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/opt/crater/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/crater/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/crater/cargo-home" "-e" "RUSTUP_HOME=/opt/crater/rustup-home" "-w" "/opt/crater/workdir" "-m" "1536M" "--network" "none" "rustops/crates-build-env" "/opt/crater/cargo-home/bin/cargo" "+beta-2019-08-13" "test" "--frozen"` [INFO] [stdout] 0ee028cd167cea51d7cbf4e53a72e343c1ecb23c17a5c8ea39806e89025cec45 [INFO] running `"docker" "start" "-a" "0ee028cd167cea51d7cbf4e53a72e343c1ecb23c17a5c8ea39806e89025cec45"` [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 0.05s [INFO] [stderr] Running /opt/crater/target/debug/deps/stat_germline_pos-fe1a45549b17b183 [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] running `"docker" "inspect" "0ee028cd167cea51d7cbf4e53a72e343c1ecb23c17a5c8ea39806e89025cec45"` [INFO] running `"docker" "rm" "-f" "0ee028cd167cea51d7cbf4e53a72e343c1ecb23c17a5c8ea39806e89025cec45"` [INFO] [stdout] 0ee028cd167cea51d7cbf4e53a72e343c1ecb23c17a5c8ea39806e89025cec45