[INFO] updating cached repository 10XGenomics/rust-pseudoaligner [INFO] running `"git" "fetch" "--all"` [INFO] [stdout] Fetching origin [INFO] [stderr] From git://github.com/10XGenomics/rust-pseudoaligner [INFO] [stderr] * branch HEAD -> FETCH_HEAD [INFO] running `"git" "clone" "work/cache/sources/gh/10XGenomics/rust-pseudoaligner" "work/ex/beta-1.38-1/sources/1.37.0/gh/10XGenomics/rust-pseudoaligner"` [INFO] [stderr] Cloning into 'work/ex/beta-1.38-1/sources/1.37.0/gh/10XGenomics/rust-pseudoaligner'... [INFO] [stderr] done. [INFO] running `"git" "clone" "work/cache/sources/gh/10XGenomics/rust-pseudoaligner" "work/ex/beta-1.38-1/sources/beta-2019-08-13/gh/10XGenomics/rust-pseudoaligner"` [INFO] [stderr] Cloning into 'work/ex/beta-1.38-1/sources/beta-2019-08-13/gh/10XGenomics/rust-pseudoaligner'... [INFO] [stderr] done. [INFO] running `"git" "rev-parse" "HEAD"` [INFO] [stdout] 1229501709adb389886fde3a90609b12bd3b5055 [INFO] sha for GitHub repo 10XGenomics/rust-pseudoaligner: 1229501709adb389886fde3a90609b12bd3b5055 [INFO] validating manifest of 10XGenomics/rust-pseudoaligner on toolchain 1.37.0 [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+1.37.0" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] validating manifest of 10XGenomics/rust-pseudoaligner on toolchain beta-2019-08-13 [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+beta-2019-08-13" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] started frobbing 10XGenomics/rust-pseudoaligner [INFO] finished frobbing 10XGenomics/rust-pseudoaligner [INFO] frobbed toml for 10XGenomics/rust-pseudoaligner written to work/ex/beta-1.38-1/sources/1.37.0/gh/10XGenomics/rust-pseudoaligner/Cargo.toml [INFO] started frobbing 10XGenomics/rust-pseudoaligner [INFO] finished frobbing 10XGenomics/rust-pseudoaligner [INFO] frobbed toml for 10XGenomics/rust-pseudoaligner written to work/ex/beta-1.38-1/sources/beta-2019-08-13/gh/10XGenomics/rust-pseudoaligner/Cargo.toml [INFO] crate 10XGenomics/rust-pseudoaligner already has a lockfile, it will not be regenerated [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+1.37.0" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+beta-2019-08-13" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] testing 10XGenomics/rust-pseudoaligner against beta-2019-08-13 for beta-1.38-1 [INFO] running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/beta-1.38-1/worker-7/beta-2019-08-13:/opt/crater/target:rw,Z" "-v" "/mnt/big/crater/work/ex/beta-1.38-1/sources/beta-2019-08-13/gh/10XGenomics/rust-pseudoaligner:/opt/crater/workdir:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/opt/crater/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/opt/crater/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/opt/crater/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/crater/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/crater/cargo-home" "-e" "RUSTUP_HOME=/opt/crater/rustup-home" "-w" "/opt/crater/workdir" "-m" "1536M" "--network" "none" "rustops/crates-build-env" "/opt/crater/cargo-home/bin/cargo" "+beta-2019-08-13" "build" "--frozen"` [INFO] [stdout] 1c74ea771ea46b8647a2c310483d528bca35b17248b71785f7f87a039c7b832f [INFO] running `"docker" "start" "-a" "1c74ea771ea46b8647a2c310483d528bca35b17248b71785f7f87a039c7b832f"` [INFO] [stderr] Compiling heapsize v0.4.2 [INFO] [stderr] Compiling serde v1.0.78 [INFO] [stderr] Compiling bv v0.7.4 [INFO] [stderr] Compiling ndarray v0.9.1 [INFO] [stderr] Compiling spin v0.4.9 [INFO] [stderr] Compiling termcolor v1.0.3 [INFO] [stderr] Compiling byteorder v1.2.6 [INFO] [stderr] Compiling pdqsort v1.0.3 [INFO] [stderr] Compiling bytecount v0.3.2 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling log v0.4.5 [INFO] [stderr] Compiling miniz-sys v0.1.10 [INFO] [stderr] Compiling itertools v0.6.5 [INFO] [stderr] Compiling bit-set v0.4.0 [INFO] [stderr] Compiling concurrent-hashmap v0.2.2 [INFO] [stderr] Compiling csv-core v0.1.4 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling num-complex v0.2.0 [INFO] [stderr] Compiling itertools-num v0.1.2 [INFO] [stderr] Compiling statrs v0.9.0 [INFO] [stderr] Compiling fxhash v0.2.1 [INFO] [stderr] Compiling crossbeam-epoch v0.3.1 [INFO] [stderr] Compiling crossbeam-epoch v0.6.0 [INFO] [stderr] Compiling num-bigint v0.2.0 [INFO] [stderr] Compiling num-iter v0.1.37 [INFO] [stderr] Compiling chrono v0.4.6 [INFO] [stderr] Compiling ordered-float v0.5.1 [INFO] [stderr] Compiling crossbeam-deque v0.5.2 [INFO] [stderr] Compiling regex v1.0.5 [INFO] [stderr] Compiling regex v0.2.11 [INFO] [stderr] Compiling serde_derive v1.0.78 [INFO] [stderr] Compiling crossbeam-deque v0.2.0 [INFO] [stderr] Compiling flate2 v1.0.2 [INFO] [stderr] Compiling rayon-core v1.4.1 [INFO] [stderr] Compiling crossbeam-channel v0.2.5 [INFO] [stderr] Compiling failure v0.1.2 [INFO] [stderr] Compiling num-rational v0.2.1 [INFO] [stderr] Compiling rayon v1.0.2 [INFO] [stderr] Compiling env_logger v0.5.13 [INFO] [stderr] Compiling crossbeam v0.4.1 [INFO] [stderr] Compiling num v0.2.0 [INFO] [stderr] Compiling pretty_env_logger v0.2.3 (https://github.com/k3yavi/pretty-env-logger#57963895) [INFO] [stderr] Compiling vec_map v0.8.1 [INFO] [stderr] Compiling serde_json v1.0.27 [INFO] [stderr] Compiling bio-types v0.2.0 [INFO] [stderr] Compiling boomphf v0.2.1 (https://github.com/10XGenomics/rust-boomphf#93460338) [INFO] [stderr] Compiling multimap v0.4.0 [INFO] [stderr] Compiling csv v1.0.1 [INFO] [stderr] Compiling docopt v1.0.1 [INFO] [stderr] Compiling bincode v1.0.1 [INFO] [stderr] Compiling bio v0.22.0 [INFO] [stderr] Compiling debruijn v0.2.0 (https://github.com/10XGenomics/rust-debruijn#4f12ecdc) [INFO] [stderr] Compiling debruijn_mapping v0.2.0 (/opt/crater/workdir) [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/utils.rs:48:54 [INFO] [stderr] | [INFO] [stderr] 48 | fn _open_with_gz>(p: P) -> Result, Error> { [INFO] [stderr] | ^^^^^^^ help: use `dyn`: `dyn BufRead` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred [INFO] [stderr] --> src/build_index.rs:82:1 [INFO] [stderr] | [INFO] [stderr] 82 | / lazy_static! { [INFO] [stderr] 83 | | static ref PERM: Vec = { [INFO] [stderr] 84 | | let maxp = 1 << (2 * PmerType::k()); [INFO] [stderr] 85 | | let mut permutation = Vec::with_capacity(maxp); [INFO] [stderr] ... | [INFO] [stderr] 90 | | }; [INFO] [stderr] 91 | | } [INFO] [stderr] | |_^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(deprecated)]` on by default [INFO] [stderr] = note: this warning originates in a macro outside of the current crate (in Nightly builds, run with -Z external-macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 2m 18s [INFO] running `"docker" "inspect" "1c74ea771ea46b8647a2c310483d528bca35b17248b71785f7f87a039c7b832f"` [INFO] running `"docker" "rm" "-f" "1c74ea771ea46b8647a2c310483d528bca35b17248b71785f7f87a039c7b832f"` [INFO] [stdout] 1c74ea771ea46b8647a2c310483d528bca35b17248b71785f7f87a039c7b832f [INFO] running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/beta-1.38-1/worker-7/beta-2019-08-13:/opt/crater/target:rw,Z" "-v" "/mnt/big/crater/work/ex/beta-1.38-1/sources/beta-2019-08-13/gh/10XGenomics/rust-pseudoaligner:/opt/crater/workdir:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/opt/crater/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/opt/crater/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/opt/crater/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/crater/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/crater/cargo-home" "-e" "RUSTUP_HOME=/opt/crater/rustup-home" "-w" "/opt/crater/workdir" "-m" "1536M" "--network" "none" "rustops/crates-build-env" "/opt/crater/cargo-home/bin/cargo" "+beta-2019-08-13" "test" "--frozen" "--no-run"` [INFO] [stdout] 5500cf5ba22102203a7d49b4f1cdb2ac4341c6189b02070f2ce8241c8b6387d7 [INFO] running `"docker" "start" "-a" "5500cf5ba22102203a7d49b4f1cdb2ac4341c6189b02070f2ce8241c8b6387d7"` [INFO] [stderr] Compiling debruijn_mapping v0.2.0 (/opt/crater/workdir) [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/utils.rs:48:54 [INFO] [stderr] | [INFO] [stderr] 48 | fn _open_with_gz>(p: P) -> Result, Error> { [INFO] [stderr] | ^^^^^^^ help: use `dyn`: `dyn BufRead` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred [INFO] [stderr] --> src/build_index.rs:82:1 [INFO] [stderr] | [INFO] [stderr] 82 | / lazy_static! { [INFO] [stderr] 83 | | static ref PERM: Vec = { [INFO] [stderr] 84 | | let maxp = 1 << (2 * PmerType::k()); [INFO] [stderr] 85 | | let mut permutation = Vec::with_capacity(maxp); [INFO] [stderr] ... | [INFO] [stderr] 90 | | }; [INFO] [stderr] 91 | | } [INFO] [stderr] | |_^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(deprecated)]` on by default [INFO] [stderr] = note: this warning originates in a macro outside of the current crate (in Nightly builds, run with -Z external-macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 3.16s [INFO] running `"docker" "inspect" "5500cf5ba22102203a7d49b4f1cdb2ac4341c6189b02070f2ce8241c8b6387d7"` [INFO] running `"docker" "rm" "-f" "5500cf5ba22102203a7d49b4f1cdb2ac4341c6189b02070f2ce8241c8b6387d7"` [INFO] [stdout] 5500cf5ba22102203a7d49b4f1cdb2ac4341c6189b02070f2ce8241c8b6387d7 [INFO] running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/beta-1.38-1/worker-7/beta-2019-08-13:/opt/crater/target:rw,Z" "-v" "/mnt/big/crater/work/ex/beta-1.38-1/sources/beta-2019-08-13/gh/10XGenomics/rust-pseudoaligner:/opt/crater/workdir:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/opt/crater/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/opt/crater/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/opt/crater/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/crater/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/crater/cargo-home" "-e" "RUSTUP_HOME=/opt/crater/rustup-home" "-w" "/opt/crater/workdir" "-m" "1536M" "--network" "none" "rustops/crates-build-env" "/opt/crater/cargo-home/bin/cargo" "+beta-2019-08-13" "test" "--frozen"` [INFO] [stdout] ac3ca6df45a30e26e97f1e5c0f85769e138e2ed17926d87b1d548aaaa0c0e59e [INFO] running `"docker" "start" "-a" "ac3ca6df45a30e26e97f1e5c0f85769e138e2ed17926d87b1d548aaaa0c0e59e"` [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 0.24s [INFO] [stderr] Running /opt/crater/target/debug/deps/debruijn_mapping-32ac5530b3a4a255 [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] [stderr] Running /opt/crater/target/debug/deps/pseudoaligner-9445ee52a72503ee [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] [stderr] Doc-tests debruijn_mapping [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] running `"docker" "inspect" "ac3ca6df45a30e26e97f1e5c0f85769e138e2ed17926d87b1d548aaaa0c0e59e"` [INFO] running `"docker" "rm" "-f" "ac3ca6df45a30e26e97f1e5c0f85769e138e2ed17926d87b1d548aaaa0c0e59e"` [INFO] [stdout] ac3ca6df45a30e26e97f1e5c0f85769e138e2ed17926d87b1d548aaaa0c0e59e