[INFO] crate libprosic 0.7.3 is already in cache [INFO] extracting crate libprosic 0.7.3 into work/ex/beta-1.38-1/sources/1.37.0/reg/libprosic/0.7.3 [INFO] extracting crate libprosic 0.7.3 into work/ex/beta-1.38-1/sources/beta-2019-08-13/reg/libprosic/0.7.3 [INFO] validating manifest of libprosic-0.7.3 on toolchain 1.37.0 [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+1.37.0" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] validating manifest of libprosic-0.7.3 on toolchain beta-2019-08-13 [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+beta-2019-08-13" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] started frobbing libprosic-0.7.3 [INFO] finished frobbing libprosic-0.7.3 [INFO] frobbed toml for libprosic-0.7.3 written to work/ex/beta-1.38-1/sources/1.37.0/reg/libprosic/0.7.3/Cargo.toml [INFO] started frobbing libprosic-0.7.3 [INFO] finished frobbing libprosic-0.7.3 [INFO] frobbed toml for libprosic-0.7.3 written to work/ex/beta-1.38-1/sources/beta-2019-08-13/reg/libprosic/0.7.3/Cargo.toml [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+1.37.0" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update"` [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+beta-2019-08-13" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update"` [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+1.37.0" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+beta-2019-08-13" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] testing libprosic-0.7.3 against 1.37.0 for beta-1.38-1 [INFO] running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/beta-1.38-1/worker-0/1.37.0:/opt/crater/target:rw,Z" "-v" "/mnt/big/crater/work/ex/beta-1.38-1/sources/1.37.0/reg/libprosic/0.7.3:/opt/crater/workdir:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/opt/crater/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/opt/crater/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/opt/crater/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/crater/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/crater/cargo-home" "-e" "RUSTUP_HOME=/opt/crater/rustup-home" "-w" "/opt/crater/workdir" "-m" "1536M" "--network" "none" "rustops/crates-build-env" "/opt/crater/cargo-home/bin/cargo" "+1.37.0" "build" "--frozen"` [INFO] [stdout] 30757690f5a1ed1cf61844a16ac49c97d4446d1c6100bdf288e38060d7cef207 [INFO] running `"docker" "start" "-a" "30757690f5a1ed1cf61844a16ac49c97d4446d1c6100bdf288e38060d7cef207"` [INFO] [stderr] Compiling bindgen v0.36.1 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Compiling ndarray v0.6.10 [INFO] [stderr] Compiling bio v0.24.0 [INFO] [stderr] Compiling linear-map v1.2.0 [INFO] [stderr] Compiling c_vec v1.0.12 [INFO] [stderr] Compiling cached v0.7.0 [INFO] [stderr] Compiling clang-sys v0.22.0 [INFO] [stderr] Compiling fs-utils v1.1.1 [INFO] [stderr] Compiling GSL v1.1.0 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling bzip2-sys v0.1.7 [INFO] [stderr] Compiling lzma-sys v0.1.15 [INFO] [stderr] Compiling libz-sys v1.0.25 [INFO] [stderr] Compiling aho-corasick v0.6.10 [INFO] [stderr] Compiling itertools-num v0.1.3 [INFO] [stderr] Compiling bv v0.10.0 [INFO] [stderr] Compiling statrs v0.9.0 [INFO] [stderr] Compiling ndarray v0.12.1 [INFO] [stderr] Compiling env_logger v0.5.13 [INFO] [stderr] Compiling vec_map v0.8.1 [INFO] [stderr] Compiling bstr v0.2.7 [INFO] [stderr] Compiling bio-types v0.5.1 [INFO] [stderr] Compiling multimap v0.4.0 [INFO] [stderr] Compiling rulinalg v0.2.2 [INFO] [stderr] Compiling regex v0.2.11 [INFO] [stderr] Compiling clap v2.33.0 [INFO] [stderr] Compiling csv v1.1.1 [INFO] [stderr] Compiling rusty-machine v0.4.4 [INFO] [stderr] Compiling rust-htslib v0.22.0 [INFO] [stderr] Compiling libprosic v0.7.3 (/opt/crater/workdir) [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/call/pairwise.rs:55:62 [INFO] [stderr] | [INFO] [stderr] 55 | ) -> Result>>, Box> [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] | [INFO] [stderr] = note: #[warn(bare_trait_objects)] on by default [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/call/pairwise.rs:116:21 [INFO] [stderr] | [INFO] [stderr] 116 | ) -> Result<(), Box> [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/estimation/alignment_properties.rs:40:68 [INFO] [stderr] | [INFO] [stderr] 40 | pub fn estimate(bam: &mut R) -> Result> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/estimation/alignment_properties.rs:142:33 [INFO] [stderr] | [INFO] [stderr] 142 | ) -> Result> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/estimation/fdr/ev.rs:35:21 [INFO] [stderr] | [INFO] [stderr] 35 | ) -> Result<(), Box> [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/model/evidence/fragments.rs:52:89 [INFO] [stderr] | [INFO] [stderr] 52 | pub fn estimate_insert_size(left: &bam::Record, right: &bam::Record) -> Result> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/model/evidence/fragments.rs:56:68 [INFO] [stderr] | [INFO] [stderr] 56 | let aln = |rec: &bam::Record, cigar| -> Result<(u32, u32), Box> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/model/evidence/fragments.rs:120:41 [INFO] [stderr] | [INFO] [stderr] 120 | ) -> Result<(LogProb, LogProb), Box> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/model/evidence/reads.rs:30:49 [INFO] [stderr] | [INFO] [stderr] 30 | ) -> Result, Box>; [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/model/evidence/reads.rs:56:49 [INFO] [stderr] | [INFO] [stderr] 56 | ) -> Result, Box> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/model/evidence/reads.rs:101:49 [INFO] [stderr] | [INFO] [stderr] 101 | ) -> Result, Box> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/model/evidence/reads.rs:169:49 [INFO] [stderr] | [INFO] [stderr] 169 | ) -> Result, Box> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/model/sample.rs:68:82 [INFO] [stderr] | [INFO] [stderr] 68 | pub fn fill(&mut self, chrom: &[u8], start: u32, end: u32) -> Result<(), Box> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/model/sample.rs:220:39 [INFO] [stderr] | [INFO] [stderr] 220 | ) -> Result, Box> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/model/sample.rs:362:42 [INFO] [stderr] | [INFO] [stderr] 362 | ) -> Result, Box> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/model/sample.rs:363:34 [INFO] [stderr] | [INFO] [stderr] 363 | let mut evidence: RefMut = match variant { [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: use `dyn`: `dyn evidence::reads::AbstractReadEvidence` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/model/sample.rs:409:42 [INFO] [stderr] | [INFO] [stderr] 409 | ) -> Result, Box> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/model/sample.rs:412:44 [INFO] [stderr] | [INFO] [stderr] 412 | -> Result<(LogProb, LogProb), Box> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/model/mod.rs:275:41 [INFO] [stderr] | [INFO] [stderr] 275 | ) -> Result, Box> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/model/mod.rs:416:42 [INFO] [stderr] | [INFO] [stderr] 416 | ) -> Result, Box> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/utils.rs:27:46 [INFO] [stderr] | [INFO] [stderr] 27 | ) -> Result>, Box> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/utils.rs:204:62 [INFO] [stderr] | [INFO] [stderr] 204 | pub fn seq(&mut self, chrom: &[u8]) -> Result<&[u8], Box> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/utils.rs:232:39 [INFO] [stderr] | [INFO] [stderr] 232 | ) -> Result>, Box> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/utils.rs:276:35 [INFO] [stderr] | [INFO] [stderr] 276 | ) -> Result>, Box> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/utils.rs:317:21 [INFO] [stderr] | [INFO] [stderr] 317 | ) -> Result<(), Box> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/utils.rs:367:30 [INFO] [stderr] | [INFO] [stderr] 367 | ) -> Result> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 1m 37s [INFO] running `"docker" "inspect" "30757690f5a1ed1cf61844a16ac49c97d4446d1c6100bdf288e38060d7cef207"` [INFO] running `"docker" "rm" "-f" "30757690f5a1ed1cf61844a16ac49c97d4446d1c6100bdf288e38060d7cef207"` [INFO] [stdout] 30757690f5a1ed1cf61844a16ac49c97d4446d1c6100bdf288e38060d7cef207 [INFO] running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/beta-1.38-1/worker-0/1.37.0:/opt/crater/target:rw,Z" "-v" "/mnt/big/crater/work/ex/beta-1.38-1/sources/1.37.0/reg/libprosic/0.7.3:/opt/crater/workdir:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/opt/crater/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/opt/crater/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/opt/crater/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/crater/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/crater/cargo-home" "-e" "RUSTUP_HOME=/opt/crater/rustup-home" "-w" "/opt/crater/workdir" "-m" "1536M" "--network" "none" "rustops/crates-build-env" "/opt/crater/cargo-home/bin/cargo" "+1.37.0" "test" "--frozen" "--no-run"` [INFO] [stdout] ebb418204c7d4c138add03c1e2224f9478b9cf6ff264349d4e89c1cac7e09ff8 [INFO] running `"docker" "start" "-a" "ebb418204c7d4c138add03c1e2224f9478b9cf6ff264349d4e89c1cac7e09ff8"` [INFO] [stderr] Compiling fern v0.4.4 [INFO] [stderr] Compiling flate2 v0.2.20 [INFO] [stderr] Compiling libprosic v0.7.3 (/opt/crater/workdir) [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/call/pairwise.rs:55:62 [INFO] [stderr] | [INFO] [stderr] 55 | ) -> Result>>, Box> [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] | [INFO] [stderr] = note: #[warn(bare_trait_objects)] on by default [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/call/pairwise.rs:116:21 [INFO] [stderr] | [INFO] [stderr] 116 | ) -> Result<(), Box> [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/estimation/alignment_properties.rs:40:68 [INFO] [stderr] | [INFO] [stderr] 40 | pub fn estimate(bam: &mut R) -> Result> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/estimation/alignment_properties.rs:142:33 [INFO] [stderr] | [INFO] [stderr] 142 | ) -> Result> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/estimation/fdr/ev.rs:35:21 [INFO] [stderr] | [INFO] [stderr] 35 | ) -> Result<(), Box> [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/model/evidence/fragments.rs:52:89 [INFO] [stderr] | [INFO] [stderr] 52 | pub fn estimate_insert_size(left: &bam::Record, right: &bam::Record) -> Result> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/model/evidence/fragments.rs:56:68 [INFO] [stderr] | [INFO] [stderr] 56 | let aln = |rec: &bam::Record, cigar| -> Result<(u32, u32), Box> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/model/evidence/fragments.rs:120:41 [INFO] [stderr] | [INFO] [stderr] 120 | ) -> Result<(LogProb, LogProb), Box> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/model/evidence/reads.rs:30:49 [INFO] [stderr] | [INFO] [stderr] 30 | ) -> Result, Box>; [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/model/evidence/reads.rs:56:49 [INFO] [stderr] | [INFO] [stderr] 56 | ) -> Result, Box> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/model/evidence/reads.rs:101:49 [INFO] [stderr] | [INFO] [stderr] 101 | ) -> Result, Box> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/model/evidence/reads.rs:169:49 [INFO] [stderr] | [INFO] [stderr] 169 | ) -> Result, Box> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/model/sample.rs:68:82 [INFO] [stderr] | [INFO] [stderr] 68 | pub fn fill(&mut self, chrom: &[u8], start: u32, end: u32) -> Result<(), Box> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/model/sample.rs:220:39 [INFO] [stderr] | [INFO] [stderr] 220 | ) -> Result, Box> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/model/sample.rs:362:42 [INFO] [stderr] | [INFO] [stderr] 362 | ) -> Result, Box> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/model/sample.rs:363:34 [INFO] [stderr] | [INFO] [stderr] 363 | let mut evidence: RefMut = match variant { [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: use `dyn`: `dyn evidence::reads::AbstractReadEvidence` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/model/sample.rs:409:42 [INFO] [stderr] | [INFO] [stderr] 409 | ) -> Result, Box> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/model/sample.rs:412:44 [INFO] [stderr] | [INFO] [stderr] 412 | -> Result<(LogProb, LogProb), Box> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/model/mod.rs:275:41 [INFO] [stderr] | [INFO] [stderr] 275 | ) -> Result, Box> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/model/mod.rs:416:42 [INFO] [stderr] | [INFO] [stderr] 416 | ) -> Result, Box> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/utils.rs:27:46 [INFO] [stderr] | [INFO] [stderr] 27 | ) -> Result>, Box> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/utils.rs:204:62 [INFO] [stderr] | [INFO] [stderr] 204 | pub fn seq(&mut self, chrom: &[u8]) -> Result<&[u8], Box> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/utils.rs:232:39 [INFO] [stderr] | [INFO] [stderr] 232 | ) -> Result>, Box> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/utils.rs:276:35 [INFO] [stderr] | [INFO] [stderr] 276 | ) -> Result>, Box> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/utils.rs:317:21 [INFO] [stderr] | [INFO] [stderr] 317 | ) -> Result<(), Box> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/utils.rs:367:30 [INFO] [stderr] | [INFO] [stderr] 367 | ) -> Result> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] error: linking with `cc` failed: exit code: 1 [INFO] [stderr] | [INFO] [stderr] = note: "cc" "-Wl,--as-needed" "-Wl,-z,noexecstack" "-m64" "-L" "/opt/crater/rustup-home/toolchains/1.37.0-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib" "/opt/crater/target/debug/deps/libprosic-42ed7bce93b2558d.libprosic.b6nro46x-cgu.0.rcgu.o" "/opt/crater/target/debug/deps/libprosic-42ed7bce93b2558d.libprosic.b6nro46x-cgu.1.rcgu.o" "/opt/crater/target/debug/deps/libprosic-42ed7bce93b2558d.libprosic.b6nro46x-cgu.10.rcgu.o" "/opt/crater/target/debug/deps/libprosic-42ed7bce93b2558d.libprosic.b6nro46x-cgu.11.rcgu.o" "/opt/crater/target/debug/deps/libprosic-42ed7bce93b2558d.libprosic.b6nro46x-cgu.12.rcgu.o" "/opt/crater/target/debug/deps/libprosic-42ed7bce93b2558d.libprosic.b6nro46x-cgu.13.rcgu.o" "/opt/crater/target/debug/deps/libprosic-42ed7bce93b2558d.libprosic.b6nro46x-cgu.14.rcgu.o" "/opt/crater/target/debug/deps/libprosic-42ed7bce93b2558d.libprosic.b6nro46x-cgu.15.rcgu.o" "/opt/crater/target/debug/deps/libprosic-42ed7bce93b2558d.libprosic.b6nro46x-cgu.2.rcgu.o" "/opt/crater/target/debug/deps/libprosic-42ed7bce93b2558d.libprosic.b6nro46x-cgu.3.rcgu.o" "/opt/crater/target/debug/deps/libprosic-42ed7bce93b2558d.libprosic.b6nro46x-cgu.4.rcgu.o" "/opt/crater/target/debug/deps/libprosic-42ed7bce93b2558d.libprosic.b6nro46x-cgu.5.rcgu.o" "/opt/crater/target/debug/deps/libprosic-42ed7bce93b2558d.libprosic.b6nro46x-cgu.6.rcgu.o" "/opt/crater/target/debug/deps/libprosic-42ed7bce93b2558d.libprosic.b6nro46x-cgu.7.rcgu.o" "/opt/crater/target/debug/deps/libprosic-42ed7bce93b2558d.libprosic.b6nro46x-cgu.8.rcgu.o" "/opt/crater/target/debug/deps/libprosic-42ed7bce93b2558d.libprosic.b6nro46x-cgu.9.rcgu.o" "-o" "/opt/crater/target/debug/deps/libprosic-42ed7bce93b2558d" "/opt/crater/target/debug/deps/libprosic-42ed7bce93b2558d.4704juvl06ozg2dw.rcgu.o" "-Wl,--gc-sections" "-pie" "-Wl,-zrelro" "-Wl,-znow" "-nodefaultlibs" "-L" "/opt/crater/target/debug/deps" "-L" "/opt/crater/target/debug/build/miniz-sys-5ae27cb3fc5ef2d5/out" "-L" "/opt/crater/target/debug/build/rust-htslib-063ddcedd060fd7c/out" "-L" "/opt/crater/target/debug/build/bzip2-sys-166dd9cb46ba2d46/out/lib" "-L" "/usr/lib/x86_64-linux-gnu" "-L" "/usr/lib/x86_64-linux-gnu" "-L" "/opt/crater/rustup-home/toolchains/1.37.0-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-Wl,-Bstatic" "/opt/crater/rustup-home/toolchains/1.37.0-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libtest-0127509d2e54a846.rlib" "/opt/crater/rustup-home/toolchains/1.37.0-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libterm-2651f8b4eed9e86e.rlib" "/opt/crater/rustup-home/toolchains/1.37.0-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libgetopts-c729851ce6e3efb2.rlib" "/opt/crater/rustup-home/toolchains/1.37.0-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libunicode_width-e8235f0d435d4737.rlib" "/opt/crater/target/debug/deps/libenv_logger-e14e84f954228d04.rlib" "/opt/crater/target/debug/deps/libregex-52721be1cfa2554b.rlib" "/opt/crater/target/debug/deps/libutf8_ranges-7e19cf98379531b4.rlib" "/opt/crater/target/debug/deps/libregex_syntax-55ee28c5615612af.rlib" "/opt/crater/target/debug/deps/libthread_local-3db8cb180fb11fe5.rlib" "/opt/crater/target/debug/deps/libthread_id-66a058828f8b35aa.rlib" "/opt/crater/target/debug/deps/libaho_corasick-c31549915985c7fe.rlib" "/opt/crater/target/debug/deps/libmemchr-a7253e36d1dc674c.rlib" "/opt/crater/target/debug/deps/libcached-6632e823fd3ab713.rlib" "/opt/crater/target/debug/deps/libregex-897b6c0bb8cb706e.rlib" "/opt/crater/target/debug/deps/libutf8_ranges-2228619ed4752127.rlib" "/opt/crater/target/debug/deps/libregex_syntax-4a864c3631515518.rlib" "/opt/crater/target/debug/deps/libucd_util-8b770cc8b020bfb6.rlib" "/opt/crater/target/debug/deps/libaho_corasick-90ad1fdf0af2a3b9.rlib" "/opt/crater/target/debug/deps/librusty_machine-09ead497a7cb66c2.rlib" "/opt/crater/target/debug/deps/librulinalg-3eaef38412f28963.rlib" "/opt/crater/target/debug/deps/libnum-5caa7dd009747390.rlib" "/opt/crater/target/debug/deps/libnum_iter-710c4cd4b54241c7.rlib" "/opt/crater/target/debug/deps/libndarray-5c204baea6b17eec.rlib" "/opt/crater/target/debug/deps/libnum_complex-19e3195492d107fc.rlib" "/opt/crater/target/debug/deps/libnum_traits-1653dfd91ced9a3c.rlib" "/opt/crater/target/debug/deps/libitertools-12b3f5bb110a995f.rlib" "/opt/crater/target/debug/deps/libapprox-006b105747eba6fa.rlib" "/opt/crater/target/debug/deps/librgsl-0af81a49f333224a.rlib" "/opt/crater/target/debug/deps/libc_vec-c46479f165841a49.rlib" "/opt/crater/target/debug/deps/liblog-5ad476e9af8f39be.rlib" "/opt/crater/target/debug/deps/liblog-55cfa8f7ed258bff.rlib" "/opt/crater/target/debug/deps/libcfg_if-3028bdd7b8e15bb5.rlib" "/opt/crater/target/debug/deps/librust_htslib-d38a2473696d35d5.rlib" "/opt/crater/target/debug/deps/liblzma_sys-29c8e58a46b46a00.rlib" "/opt/crater/target/debug/deps/libbzip2_sys-174c0a4b5c153d2f.rlib" "/opt/crater/target/debug/deps/liblibz_sys-23f37339b02e9c95.rlib" "/opt/crater/target/debug/deps/liblinear_map-31e0c38b4542191e.rlib" "/opt/crater/target/debug/deps/liburl-ebaefb0ef9c8c191.rlib" "/opt/crater/target/debug/deps/libpercent_encoding-7ae675a5263db170.rlib" "/opt/crater/target/debug/deps/libidna-52fbc9ef9e77809d.rlib" "/opt/crater/target/debug/deps/libunicode_normalization-3ac46972447058ab.rlib" "/opt/crater/target/debug/deps/libsmallvec-8ab4c1b4228c68ef.rlib" "/opt/crater/target/debug/deps/libunicode_bidi-ad8beb3a11009df0.rlib" "/opt/crater/target/debug/deps/libmatches-5962f64d87545c04.rlib" "/opt/crater/target/debug/deps/liblazy_static-0c9d1899e9eae559.rlib" "/opt/crater/target/debug/deps/libitertools-88234677430817bc.rlib" "/opt/crater/target/debug/deps/libieee754-16ce206999f53c71.rlib" "/opt/crater/target/debug/deps/libbitflags-f034fe9ef0b445a7.rlib" "/opt/crater/target/debug/deps/libbio-0d608abdb0a8e0b3.rlib" "/opt/crater/target/debug/deps/libfxhash-15428931b358fc81.rlib" "/opt/crater/target/debug/deps/libvec_map-446f24e8ec4355b7.rlib" "/opt/crater/target/debug/deps/libstatrs-23833a5a41b05bd7.rlib" "/opt/crater/target/debug/deps/librand-0fd762944201ad46.rlib" "/opt/crater/target/debug/deps/librand-9648c01cc953f6b3.rlib" "/opt/crater/target/debug/deps/libfnv-0b54693efaf27e2a.rlib" "/opt/crater/target/debug/deps/libbv-308526f5655933ae.rlib" "/opt/crater/target/debug/deps/libordered_float-7f1462d7c3b622aa.rlib" "/opt/crater/target/debug/deps/libnum_integer-e8e7d1ec85b23cb1.rlib" "/opt/crater/target/debug/deps/libnewtype_derive-84f60c382c3a19f4.rlib" "/opt/crater/target/debug/deps/libndarray-82305ed6162e788a.rlib" "/opt/crater/target/debug/deps/libnum_complex-ec46009aecfaac81.rlib" "/opt/crater/target/debug/deps/libmatrixmultiply-073e3445d983e7bf.rlib" "/opt/crater/target/debug/deps/librawpointer-21fcc3474eb85ebb.rlib" "/opt/crater/target/debug/deps/libmultimap-44e0a3c945509878.rlib" "/opt/crater/target/debug/deps/libitertools_num-ba54e3bf1033baa1.rlib" "/opt/crater/target/debug/deps/libitertools-3ae7559e255cf35e.rlib" "/opt/crater/target/debug/deps/libeither-dfa9c429720c7162.rlib" "/opt/crater/target/debug/deps/libcustom_derive-9aa13b58de859316.rlib" "/opt/crater/target/debug/deps/libcsv-8392976d53c1f90c.rlib" "/opt/crater/target/debug/deps/libryu-be578719e5bf2327.rlib" "/opt/crater/target/debug/deps/libitoa-d35f0a89557c3310.rlib" "/opt/crater/target/debug/deps/libcsv_core-8b68fd210067a847.rlib" "/opt/crater/target/debug/deps/libbstr-91e30c670e20b294.rlib" "/opt/crater/target/debug/deps/libregex_automata-d03d5aa94020daca.rlib" "/opt/crater/target/debug/deps/libbyteorder-585fd2581aa01382.rlib" "/opt/crater/target/debug/deps/libbytecount-db3599011cb71c3f.rlib" "/opt/crater/target/debug/deps/libbit_set-7ac8ae4e843c6512.rlib" "/opt/crater/target/debug/deps/libbit_vec-3f7469548bf35617.rlib" "/opt/crater/target/debug/deps/libapprox-f00b219f5ca22a13.rlib" "/opt/crater/target/debug/deps/libnum_traits-d11dcc7883adaecb.rlib" "/opt/crater/target/debug/deps/libbio_types-fa6e22a4252826b7.rlib" "/opt/crater/target/debug/deps/libserde-dd12c9a5c23ee338.rlib" "/opt/crater/target/debug/deps/libregex-44a1a24043c65f51.rlib" "/opt/crater/target/debug/deps/libregex_syntax-74b9e606898eafee.rlib" "/opt/crater/target/debug/deps/libthread_local-1801494cfc15e4c0.rlib" "/opt/crater/target/debug/deps/libaho_corasick-43b6ea6525a7139c.rlib" "/opt/crater/target/debug/deps/libmemchr-4b173ba1780aecc1.rlib" "/opt/crater/target/debug/deps/liblibc-ebe601a73b832055.rlib" "/opt/crater/target/debug/deps/liblazy_static-eb33edc716f69401.rlib" "/opt/crater/target/debug/deps/libquick_error-a2165722eb49e44c.rlib" "-Wl,--start-group" "/opt/crater/rustup-home/toolchains/1.37.0-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libstd-4a76ff35a356aedf.rlib" "/opt/crater/rustup-home/toolchains/1.37.0-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libpanic_unwind-e11c7b3b3225afe2.rlib" "/opt/crater/rustup-home/toolchains/1.37.0-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libbacktrace-13217ede3d276f16.rlib" "/opt/crater/rustup-home/toolchains/1.37.0-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libbacktrace_sys-621a9ee22da6caa1.rlib" "/opt/crater/rustup-home/toolchains/1.37.0-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/librustc_demangle-546c844e8071bbeb.rlib" "/opt/crater/rustup-home/toolchains/1.37.0-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libhashbrown-be9569e4d599746f.rlib" "/opt/crater/rustup-home/toolchains/1.37.0-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/librustc_std_workspace_alloc-47d8845cef2a3bc5.rlib" "/opt/crater/rustup-home/toolchains/1.37.0-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libunwind-017511bce73a530c.rlib" "/opt/crater/rustup-home/toolchains/1.37.0-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libcfg_if-be7979c57a08057b.rlib" "/opt/crater/rustup-home/toolchains/1.37.0-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/liblibc-d6459c4f0817c67c.rlib" "/opt/crater/rustup-home/toolchains/1.37.0-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/liballoc-580035dd98451925.rlib" "/opt/crater/rustup-home/toolchains/1.37.0-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/librustc_std_workspace_core-aee5c24fff305dea.rlib" "/opt/crater/rustup-home/toolchains/1.37.0-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libcore-8a55a4098920125a.rlib" "-Wl,--end-group" "/opt/crater/rustup-home/toolchains/1.37.0-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libcompiler_builtins-9fc4b5be2ba5cc19.rlib" "-Wl,-Bdynamic" "-llzma" "-lz" "-lutil" "-lutil" "-ldl" "-lrt" "-lpthread" "-lgcc_s" "-lc" "-lm" "-lrt" "-lpthread" "-lutil" "-lutil" [INFO] [stderr] = note: /opt/crater/target/debug/deps/librgsl-0af81a49f333224a.rlib(rgsl-0af81a49f333224a.rgsl.2qzj9bz7-cgu.11.rcgu.o): In function `rgsl::randist::gaussian::gaussian_pdf': [INFO] [stderr] /opt/crater/cargo-home/registry/src/github.com-1ecc6299db9ec823/GSL-1.1.0/src/randist/gaussian.rs:20: undefined reference to `gsl_ran_gaussian_pdf' [INFO] [stderr] /opt/crater/target/debug/deps/librgsl-0af81a49f333224a.rlib(rgsl-0af81a49f333224a.rgsl.2qzj9bz7-cgu.11.rcgu.o): In function `rgsl::randist::gaussian::ugaussian_P': [INFO] [stderr] /opt/crater/cargo-home/registry/src/github.com-1ecc6299db9ec823/GSL-1.1.0/src/randist/gaussian.rs:73: undefined reference to `gsl_cdf_ugaussian_P' [INFO] [stderr] /opt/crater/target/debug/deps/librgsl-0af81a49f333224a.rlib(rgsl-0af81a49f333224a.rgsl.2qzj9bz7-cgu.9.rcgu.o): In function `rgsl::error::erfc': [INFO] [stderr] /opt/crater/cargo-home/registry/src/github.com-1ecc6299db9ec823/GSL-1.1.0/src/error.rs:28: undefined reference to `gsl_sf_erfc' [INFO] [stderr] collect2: error: ld returned 1 exit status [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] error: aborting due to previous error [INFO] [stderr] [INFO] [stderr] error: Could not compile `libprosic`. [INFO] [stderr] [INFO] [stderr] To learn more, run the command again with --verbose. [INFO] running `"docker" "inspect" "ebb418204c7d4c138add03c1e2224f9478b9cf6ff264349d4e89c1cac7e09ff8"` [INFO] running `"docker" "rm" "-f" "ebb418204c7d4c138add03c1e2224f9478b9cf6ff264349d4e89c1cac7e09ff8"` [INFO] [stdout] ebb418204c7d4c138add03c1e2224f9478b9cf6ff264349d4e89c1cac7e09ff8