[INFO] crate flann-sys 0.1.0 is already in cache [INFO] extracting crate flann-sys 0.1.0 into work/ex/beta-1.38-1/sources/1.37.0/reg/flann-sys/0.1.0 [INFO] extracting crate flann-sys 0.1.0 into work/ex/beta-1.38-1/sources/beta-2019-08-13/reg/flann-sys/0.1.0 [INFO] validating manifest of flann-sys-0.1.0 on toolchain 1.37.0 [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+1.37.0" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] validating manifest of flann-sys-0.1.0 on toolchain beta-2019-08-13 [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+beta-2019-08-13" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] started frobbing flann-sys-0.1.0 [INFO] finished frobbing flann-sys-0.1.0 [INFO] frobbed toml for flann-sys-0.1.0 written to work/ex/beta-1.38-1/sources/1.37.0/reg/flann-sys/0.1.0/Cargo.toml [INFO] started frobbing flann-sys-0.1.0 [INFO] finished frobbing flann-sys-0.1.0 [INFO] frobbed toml for flann-sys-0.1.0 written to work/ex/beta-1.38-1/sources/beta-2019-08-13/reg/flann-sys/0.1.0/Cargo.toml [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+1.37.0" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update"` [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+beta-2019-08-13" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update"` [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+1.37.0" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+beta-2019-08-13" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] testing flann-sys-0.1.0 against 1.37.0 for beta-1.38-1 [INFO] running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/beta-1.38-1/worker-3/1.37.0:/opt/crater/target:rw,Z" "-v" "/mnt/big/crater/work/ex/beta-1.38-1/sources/1.37.0/reg/flann-sys/0.1.0:/opt/crater/workdir:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/opt/crater/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/opt/crater/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/opt/crater/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/crater/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/crater/cargo-home" "-e" "RUSTUP_HOME=/opt/crater/rustup-home" "-w" "/opt/crater/workdir" "-m" "1536M" "--network" "none" "rustops/crates-build-env" "/opt/crater/cargo-home/bin/cargo" "+1.37.0" "build" "--frozen"` [INFO] [stdout] b165c572036f6a3f4f322b12bab6cc991683adcbad820753426331dec51cc720 [INFO] running `"docker" "start" "-a" "b165c572036f6a3f4f322b12bab6cc991683adcbad820753426331dec51cc720"` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling libc v0.2.62 [INFO] [stderr] Compiling libloading v0.4.3 [INFO] [stderr] Compiling bindgen v0.32.3 [INFO] [stderr] Compiling clang-sys v0.21.2 [INFO] [stderr] Compiling proc-macro2 v0.2.3 [INFO] [stderr] Compiling cmake v0.1.41 [INFO] [stderr] Compiling env_logger v0.4.3 [INFO] [stderr] Compiling quote v0.4.2 [INFO] [stderr] Compiling memchr v1.0.2 [INFO] [stderr] Compiling atty v0.2.13 [INFO] [stderr] Compiling which v1.0.5 [INFO] [stderr] Compiling clap v2.33.0 [INFO] [stderr] Compiling nom v3.2.1 [INFO] [stderr] Compiling cexpr v0.2.3 [INFO] [stderr] Compiling flann-sys v0.1.0 (/opt/crater/workdir) [INFO] [stderr] error: failed to run custom build command for `flann-sys v0.1.0 (/opt/crater/workdir)` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/crater/target/debug/build/flann-sys-88655d0c7f8d2bec/build-script-build` (exit code: 101) [INFO] [stderr] --- stdout [INFO] [stderr] cargo:rustc-link-lib=gomp [INFO] [stderr] cargo:rustc-link-lib=stdc++ [INFO] [stderr] running: "cmake" "/opt/crater/workdir/flann" "-DBUILD_EXAMPLES=OFF" "-DBUILD_TESTS=OFF" "-DBUILD_DOC=OFF" "-DBUILD_PYTHON_BINDINGS=OFF" "-DBUILD_MATLAB_BINDINGS=OFF" "-DUSE_OPENMP=ON" "-DCMAKE_INSTALL_PREFIX=/opt/crater/target/debug/build/flann-sys-5c8520ff2909e559/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_C_COMPILER=/usr/bin/cc" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_CXX_COMPILER=/usr/bin/c++" "-DCMAKE_BUILD_TYPE=Debug" [INFO] [stderr] -- The C compiler identification is GNU 6.3.0 [INFO] [stderr] -- The CXX compiler identification is GNU 6.3.0 [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc -- works [INFO] [stderr] -- Detecting C compiler ABI info [INFO] [stderr] -- Detecting C compiler ABI info - done [INFO] [stderr] -- Detecting C compile features [INFO] [stderr] -- Detecting C compile features - done [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ -- works [INFO] [stderr] -- Detecting CXX compiler ABI info [INFO] [stderr] -- Detecting CXX compiler ABI info - done [INFO] [stderr] -- Detecting CXX compile features [INFO] [stderr] -- Detecting CXX compile features - done [INFO] [stderr] -- Found PythonInterp: /usr/bin/python (found version "2.7.13") [INFO] [stderr] -- Could NOT find HDF5 (missing: HDF5_LIBRARIES HDF5_INCLUDE_DIRS) [INFO] [stderr] -- Could NOT find GTest (missing: GTEST_LIBRARY GTEST_INCLUDE_DIR GTEST_MAIN_LIBRARY) [INFO] [stderr] -- Try OpenMP C flag = [-fopenmp] [INFO] [stderr] -- Performing Test OpenMP_FLAG_DETECTED [INFO] [stderr] -- Performing Test OpenMP_FLAG_DETECTED - Success [INFO] [stderr] -- Try OpenMP CXX flag = [-fopenmp] [INFO] [stderr] -- Performing Test OpenMP_FLAG_DETECTED [INFO] [stderr] -- Performing Test OpenMP_FLAG_DETECTED - Success [INFO] [stderr] -- Found OpenMP: -fopenmp [INFO] [stderr] -- Install prefix: /opt/crater/target/debug/build/flann-sys-5c8520ff2909e559/out [INFO] [stderr] -- Build type: Debug [INFO] [stderr] -- Building C bindings: ON [INFO] [stderr] -- Building examples: OFF [INFO] [stderr] -- Building tests: OFF [INFO] [stderr] -- Building documentation: OFF [INFO] [stderr] -- Building python bindings: OFF [INFO] [stderr] -- Building matlab bindings: OFF [INFO] [stderr] -- Building CUDA library: OFF [INFO] [stderr] -- Using OpenMP support: ON [INFO] [stderr] -- Using MPI support: OFF [INFO] [stderr] -- Configuring incomplete, errors occurred! [INFO] [stderr] See also "/opt/crater/target/debug/build/flann-sys-5c8520ff2909e559/out/build/CMakeFiles/CMakeOutput.log". [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] CMake Warning at CMakeLists.txt:78 (message): [INFO] [stderr] hdf5 library not found, some tests will not be run [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] CMake Warning at CMakeLists.txt:117 (message): [INFO] [stderr] gtest library not found, some tests will not be run [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] CMake Warning (dev) at /usr/share/cmake-3.7/Modules/FindOpenMP.cmake:179 (if): [INFO] [stderr] if given arguments: [INFO] [stderr] [INFO] [stderr] "TRUE" [INFO] [stderr] [INFO] [stderr] An argument named "TRUE" appears in a conditional statement. Policy [INFO] [stderr] CMP0012 is not set: if() recognizes numbers and boolean constants. Run [INFO] [stderr] "cmake --help-policy CMP0012" for policy details. Use the cmake_policy [INFO] [stderr] command to set the policy and suppress this warning. [INFO] [stderr] Call Stack (most recent call first): [INFO] [stderr] /usr/share/cmake-3.7/Modules/FindOpenMP.cmake:224 (_OPENMP_GET_SPEC_DATE) [INFO] [stderr] CMakeLists.txt:122 (find_package) [INFO] [stderr] This warning is for project developers. Use -Wno-dev to suppress it. [INFO] [stderr] [INFO] [stderr] CMake Warning (dev) at /usr/share/cmake-3.7/Modules/FindOpenMP.cmake:179 (if): [INFO] [stderr] if given arguments: [INFO] [stderr] [INFO] [stderr] "TRUE" [INFO] [stderr] [INFO] [stderr] An argument named "TRUE" appears in a conditional statement. Policy [INFO] [stderr] CMP0012 is not set: if() recognizes numbers and boolean constants. Run [INFO] [stderr] "cmake --help-policy CMP0012" for policy details. Use the cmake_policy [INFO] [stderr] command to set the policy and suppress this warning. [INFO] [stderr] Call Stack (most recent call first): [INFO] [stderr] /usr/share/cmake-3.7/Modules/FindOpenMP.cmake:266 (_OPENMP_GET_SPEC_DATE) [INFO] [stderr] CMakeLists.txt:122 (find_package) [INFO] [stderr] This warning is for project developers. Use -Wno-dev to suppress it. [INFO] [stderr] [INFO] [stderr] CMake Error: Could not open file for write in copy operation /opt/crater/workdir/flann/src/cpp/flann/config.h.tmp [INFO] [stderr] CMake Error: : System Error: Read-only file system [INFO] [stderr] CMake Error at src/cpp/CMakeLists.txt:5 (configure_file): [INFO] [stderr] configure_file Problem configuring file [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] thread 'main' panicked at ' [INFO] [stderr] command did not execute successfully, got: exit code: 1 [INFO] [stderr] [INFO] [stderr] build script failed, must exit now', /opt/crater/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.41/src/lib.rs:835:5 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x55a5228c17db - backtrace::backtrace::libunwind::trace::hfe5db90796807973 [INFO] [stderr] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.29/src/backtrace/libunwind.rs:88 [INFO] [stderr] 1: 0x55a5228c17db - backtrace::backtrace::trace_unsynchronized::h34b865a835594335 [INFO] [stderr] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.29/src/backtrace/mod.rs:66 [INFO] [stderr] 2: 0x55a5228c17db - std::sys_common::backtrace::_print::h527254ae44989167 [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:47 [INFO] [stderr] 3: 0x55a5228c17db - std::sys_common::backtrace::print::he85dd5ddddf46503 [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:36 [INFO] [stderr] 4: 0x55a5228c17db - std::panicking::default_hook::{{closure}}::h847a2eb38b396f14 [INFO] [stderr] at src/libstd/panicking.rs:200 [INFO] [stderr] 5: 0x55a5228c14b7 - std::panicking::default_hook::h2ca0f9a30a0e206b [INFO] [stderr] at src/libstd/panicking.rs:214 [INFO] [stderr] 6: 0x55a5228c1f50 - std::panicking::rust_panic_with_hook::hffcefc09751839d1 [INFO] [stderr] at src/libstd/panicking.rs:477 [INFO] [stderr] 7: 0x55a5228c1ad2 - std::panicking::continue_panic_fmt::hc0f142c930c846fc [INFO] [stderr] at src/libstd/panicking.rs:384 [INFO] [stderr] 8: 0x55a5228c1a1f - std::panicking::begin_panic_fmt::ha6acf0ffd6d7f80d [INFO] [stderr] at src/libstd/panicking.rs:339 [INFO] [stderr] 9: 0x55a52221a746 - cmake::fail::h02534bb967612e40 [INFO] [stderr] at /opt/crater/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.41/src/lib.rs:835 [INFO] [stderr] 10: 0x55a52221a088 - cmake::run::he67a233eff1405db [INFO] [stderr] at /opt/crater/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.41/src/lib.rs:813 [INFO] [stderr] 11: 0x55a52221586e - cmake::Config::build::h2f17845a4dba50e4 [INFO] [stderr] at /opt/crater/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.41/src/lib.rs:651 [INFO] [stderr] 12: 0x55a52220f631 - build_script_build::main::h5e69d009c582f904 [INFO] [stderr] at /opt/crater/workdir/build.rs:30 [INFO] [stderr] 13: 0x55a52220fb30 - std::rt::lang_start::{{closure}}::h42317d6733673607 [INFO] [stderr] at /rustc/eae3437dfe991621e8afdc82734f4a172d7ddf9b/src/libstd/rt.rs:64 [INFO] [stderr] 14: 0x55a5228c1953 - std::rt::lang_start_internal::{{closure}}::h447d8812e3ee306d [INFO] [stderr] at src/libstd/rt.rs:49 [INFO] [stderr] 15: 0x55a5228c1953 - std::panicking::try::do_call::h4a61cb372364c745 [INFO] [stderr] at src/libstd/panicking.rs:296 [INFO] [stderr] 16: 0x55a5228c9a5a - __rust_maybe_catch_panic [INFO] [stderr] at src/libpanic_unwind/lib.rs:82 [INFO] [stderr] 17: 0x55a5228c245d - std::panicking::try::hdf71f938885bca42 [INFO] [stderr] at src/libstd/panicking.rs:275 [INFO] [stderr] 18: 0x55a5228c245d - std::panic::catch_unwind::h7e85dbf162b1611a [INFO] [stderr] at src/libstd/panic.rs:394 [INFO] [stderr] 19: 0x55a5228c245d - std::rt::lang_start_internal::h1e06cc26b9fc25ea [INFO] [stderr] at src/libstd/rt.rs:48 [INFO] [stderr] 20: 0x55a52220fb09 - std::rt::lang_start::h6bc7f0e5d3e4a3d9 [INFO] [stderr] at /rustc/eae3437dfe991621e8afdc82734f4a172d7ddf9b/src/libstd/rt.rs:64 [INFO] [stderr] 21: 0x55a52220fa1a - main [INFO] [stderr] 22: 0x7f2b76b232e1 - __libc_start_main [INFO] [stderr] 23: 0x55a52220f2aa - _start [INFO] [stderr] 24: 0x0 - [INFO] [stderr] [INFO] running `"docker" "inspect" "b165c572036f6a3f4f322b12bab6cc991683adcbad820753426331dec51cc720"` [INFO] running `"docker" "rm" "-f" "b165c572036f6a3f4f322b12bab6cc991683adcbad820753426331dec51cc720"` [INFO] [stdout] b165c572036f6a3f4f322b12bab6cc991683adcbad820753426331dec51cc720