[INFO] crate bio-types 0.5.1 is already in cache [INFO] extracting crate bio-types 0.5.1 into work/ex/beta-1.38-1/sources/1.37.0/reg/bio-types/0.5.1 [INFO] extracting crate bio-types 0.5.1 into work/ex/beta-1.38-1/sources/beta-2019-08-13/reg/bio-types/0.5.1 [INFO] validating manifest of bio-types-0.5.1 on toolchain 1.37.0 [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+1.37.0" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] validating manifest of bio-types-0.5.1 on toolchain beta-2019-08-13 [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+beta-2019-08-13" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] started frobbing bio-types-0.5.1 [INFO] finished frobbing bio-types-0.5.1 [INFO] frobbed toml for bio-types-0.5.1 written to work/ex/beta-1.38-1/sources/1.37.0/reg/bio-types/0.5.1/Cargo.toml [INFO] started frobbing bio-types-0.5.1 [INFO] finished frobbing bio-types-0.5.1 [INFO] frobbed toml for bio-types-0.5.1 written to work/ex/beta-1.38-1/sources/beta-2019-08-13/reg/bio-types/0.5.1/Cargo.toml [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+1.37.0" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update"` [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+beta-2019-08-13" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update"` [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+1.37.0" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+beta-2019-08-13" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] testing bio-types-0.5.1 against 1.37.0 for beta-1.38-1 [INFO] running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/beta-1.38-1/worker-1/1.37.0:/opt/crater/target:rw,Z" "-v" "/mnt/big/crater/work/ex/beta-1.38-1/sources/1.37.0/reg/bio-types/0.5.1:/opt/crater/workdir:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/opt/crater/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/opt/crater/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/opt/crater/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/crater/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/crater/cargo-home" "-e" "RUSTUP_HOME=/opt/crater/rustup-home" "-w" "/opt/crater/workdir" "-m" "1536M" "--network" "none" "rustops/crates-build-env" "/opt/crater/cargo-home/bin/cargo" "+1.37.0" "build" "--frozen"` [INFO] [stdout] 108d78aff730389b0d28649fabb8a446cc0b44579ae8a43313f9f38e96fa5407 [INFO] running `"docker" "start" "-a" "108d78aff730389b0d28649fabb8a446cc0b44579ae8a43313f9f38e96fa5407"` [INFO] [stderr] warning: only one of `license` or `license-file` is necessary [INFO] [stderr] Compiling bio-types v0.5.1 (/opt/crater/workdir) [INFO] [stderr] warning: unused doc comment [INFO] [stderr] --> src/annot/mod.rs:55:1 [INFO] [stderr] | [INFO] [stderr] 55 | /// Errors that arise in parsing annotations. [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] 56 | / quick_error! { [INFO] [stderr] 57 | | #[derive(Debug, Clone)] [INFO] [stderr] 58 | | pub enum ParseAnnotError { [INFO] [stderr] 59 | | BadAnnot { [INFO] [stderr] ... | [INFO] [stderr] 74 | | } [INFO] [stderr] 75 | | } [INFO] [stderr] | |_- rustdoc does not generate documentation for macro expansions [INFO] [stderr] | [INFO] [stderr] = note: #[warn(unused_doc_comments)] on by default [INFO] [stderr] = help: to document an item produced by a macro, the macro must produce the documentation as part of its expansion [INFO] [stderr] [INFO] [stderr] warning: unused doc comment [INFO] [stderr] --> src/annot/mod.rs:77:1 [INFO] [stderr] | [INFO] [stderr] 77 | /// Errors that arise in maniuplating annotations [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] 78 | / quick_error! { [INFO] [stderr] 79 | | #[derive(Debug, Clone)] [INFO] [stderr] 80 | | pub enum AnnotError { [INFO] [stderr] 81 | | NoStrand { [INFO] [stderr] ... | [INFO] [stderr] 87 | | } [INFO] [stderr] 88 | | } [INFO] [stderr] | |_- rustdoc does not generate documentation for macro expansions [INFO] [stderr] | [INFO] [stderr] = help: to document an item produced by a macro, the macro must produce the documentation as part of its expansion [INFO] [stderr] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 1.74s [INFO] running `"docker" "inspect" "108d78aff730389b0d28649fabb8a446cc0b44579ae8a43313f9f38e96fa5407"` [INFO] running `"docker" "rm" "-f" "108d78aff730389b0d28649fabb8a446cc0b44579ae8a43313f9f38e96fa5407"` [INFO] [stdout] 108d78aff730389b0d28649fabb8a446cc0b44579ae8a43313f9f38e96fa5407 [INFO] running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/beta-1.38-1/worker-1/1.37.0:/opt/crater/target:rw,Z" "-v" "/mnt/big/crater/work/ex/beta-1.38-1/sources/1.37.0/reg/bio-types/0.5.1:/opt/crater/workdir:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/opt/crater/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/opt/crater/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/opt/crater/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/crater/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/crater/cargo-home" "-e" "RUSTUP_HOME=/opt/crater/rustup-home" "-w" "/opt/crater/workdir" "-m" "1536M" "--network" "none" "rustops/crates-build-env" "/opt/crater/cargo-home/bin/cargo" "+1.37.0" "test" "--frozen" "--no-run"` [INFO] [stdout] 7e5af3768312f9f9982169995a5647110e29fe51c8f6b8371ad87a1d2b684991 [INFO] running `"docker" "start" "-a" "7e5af3768312f9f9982169995a5647110e29fe51c8f6b8371ad87a1d2b684991"` [INFO] [stderr] warning: only one of `license` or `license-file` is necessary [INFO] [stderr] Compiling bio-types v0.5.1 (/opt/crater/workdir) [INFO] [stderr] warning: unused doc comment [INFO] [stderr] --> src/annot/mod.rs:55:1 [INFO] [stderr] | [INFO] [stderr] 55 | /// Errors that arise in parsing annotations. [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] 56 | / quick_error! { [INFO] [stderr] 57 | | #[derive(Debug, Clone)] [INFO] [stderr] 58 | | pub enum ParseAnnotError { [INFO] [stderr] 59 | | BadAnnot { [INFO] [stderr] ... | [INFO] [stderr] 74 | | } [INFO] [stderr] 75 | | } [INFO] [stderr] | |_- rustdoc does not generate documentation for macro expansions [INFO] [stderr] | [INFO] [stderr] = note: #[warn(unused_doc_comments)] on by default [INFO] [stderr] = help: to document an item produced by a macro, the macro must produce the documentation as part of its expansion [INFO] [stderr] [INFO] [stderr] warning: unused doc comment [INFO] [stderr] --> src/annot/mod.rs:77:1 [INFO] [stderr] | [INFO] [stderr] 77 | /// Errors that arise in maniuplating annotations [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] 78 | / quick_error! { [INFO] [stderr] 79 | | #[derive(Debug, Clone)] [INFO] [stderr] 80 | | pub enum AnnotError { [INFO] [stderr] 81 | | NoStrand { [INFO] [stderr] ... | [INFO] [stderr] 87 | | } [INFO] [stderr] 88 | | } [INFO] [stderr] | |_- rustdoc does not generate documentation for macro expansions [INFO] [stderr] | [INFO] [stderr] = help: to document an item produced by a macro, the macro must produce the documentation as part of its expansion [INFO] [stderr] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 3.81s [INFO] running `"docker" "inspect" "7e5af3768312f9f9982169995a5647110e29fe51c8f6b8371ad87a1d2b684991"` [INFO] running `"docker" "rm" "-f" "7e5af3768312f9f9982169995a5647110e29fe51c8f6b8371ad87a1d2b684991"` [INFO] [stdout] 7e5af3768312f9f9982169995a5647110e29fe51c8f6b8371ad87a1d2b684991 [INFO] running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/beta-1.38-1/worker-1/1.37.0:/opt/crater/target:rw,Z" "-v" "/mnt/big/crater/work/ex/beta-1.38-1/sources/1.37.0/reg/bio-types/0.5.1:/opt/crater/workdir:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/opt/crater/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/opt/crater/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/opt/crater/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/crater/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/crater/cargo-home" "-e" "RUSTUP_HOME=/opt/crater/rustup-home" "-w" "/opt/crater/workdir" "-m" "1536M" "--network" "none" "rustops/crates-build-env" "/opt/crater/cargo-home/bin/cargo" "+1.37.0" "test" "--frozen"` [INFO] [stdout] 97c051f4e893564385531b6bc7db2d611aba9315d84f93b19d4b199460fa73c0 [INFO] running `"docker" "start" "-a" "97c051f4e893564385531b6bc7db2d611aba9315d84f93b19d4b199460fa73c0"` [INFO] [stderr] warning: only one of `license` or `license-file` is necessary [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 0.03s [INFO] [stderr] Running /opt/crater/target/debug/deps/bio_types-202bf56b24e1ca42 [INFO] [stdout] [INFO] [stdout] running 13 tests [INFO] [stdout] test alignment::tests::test_cigar ... ok [INFO] [stdout] test annot::pos::tests::strand_conversion ... ok [INFO] [stdout] test annot::contig::tests::into_outof ... ok [INFO] [stdout] test alignment::tests::test_pretty ... ok [INFO] [stdout] test annot::pos::tests::pos_accessors ... ok [INFO] [stdout] test annot::pos::tests::loc_impl ... ok [INFO] [stdout] test annot::contig::tests::intersection ... ok [INFO] [stdout] test annot::contig::tests::first_and_last ... ok [INFO] [stdout] test annot::spliced::tests::intersection ... ok [INFO] [stdout] test annot::spliced::tests::into_outof ... ok [INFO] [stdout] test annot::pos::tests::string_representation ... ok [INFO] [stdout] test strand::tests::test_strand ... ok [INFO] [stdout] test annot::spliced::tests::length_start_to_contig ... ok [INFO] [stderr] Doc-tests bio-types [INFO] [stdout] [INFO] [stdout] test result: ok. 13 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 15 tests [INFO] [stdout] test src/annot/contig.rs - annot::contig::Contig::new (line 57) ... ok [INFO] [stdout] test src/alignment.rs - alignment::Alignment::cigar (line 89) ... ok [INFO] [stdout] test src/annot/contig.rs - annot::contig::Contig::extend_downstream (line 177) ... ok [INFO] [stdout] test src/annot/contig.rs - annot::contig::Contig::extend_upstream (line 150) ... ok [INFO] [stdout] test src/annot/contig.rs - annot::contig::Contig::with_first_length (line 82) ... ok [INFO] [stdout] test src/annot/pos.rs - annot::pos::Pos::add_assign (line 100) ... ok [INFO] [stdout] test src/annot/contig.rs - annot::contig::Contig (line 32) ... ok [INFO] [stdout] test src/annot/pos.rs - annot::pos::Pos (line 31) ... ok [INFO] [stdout] test src/annot/mod.rs - annot (line 30) ... ok [INFO] [stdout] test src/annot/pos.rs - annot::pos::Pos::sub_assign (line 131) ... ok [INFO] [stdout] test src/annot/pos.rs - annot::pos::Pos::new (line 55) ... ok [INFO] [stdout] test src/annot/refids.rs - annot::refids::RefIDSet (line 14) ... ok [INFO] [stdout] test src/annot/spliced.rs - annot::spliced::Spliced::new (line 238) ... ok [INFO] [stdout] test src/strand.rs - strand::ReqStrand::on_strand (line 153) ... ok [INFO] [stdout] test src/annot/spliced.rs - annot::spliced::Spliced (line 208) ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 15 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] running `"docker" "inspect" "97c051f4e893564385531b6bc7db2d611aba9315d84f93b19d4b199460fa73c0"` [INFO] running `"docker" "rm" "-f" "97c051f4e893564385531b6bc7db2d611aba9315d84f93b19d4b199460fa73c0"` [INFO] [stdout] 97c051f4e893564385531b6bc7db2d611aba9315d84f93b19d4b199460fa73c0