[INFO] crate bio 0.28.2 is already in cache
[INFO] extracting crate bio 0.28.2 into work/ex/beta-1.38-1/sources/1.37.0/reg/bio/0.28.2
[INFO] extracting crate bio 0.28.2 into work/ex/beta-1.38-1/sources/beta-2019-08-13/reg/bio/0.28.2
[INFO] validating manifest of bio-0.28.2 on toolchain 1.37.0
[INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+1.37.0" "read-manifest" "--manifest-path" "Cargo.toml"`
[INFO] validating manifest of bio-0.28.2 on toolchain beta-2019-08-13
[INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+beta-2019-08-13" "read-manifest" "--manifest-path" "Cargo.toml"`
[INFO] started frobbing bio-0.28.2
[INFO] finished frobbing bio-0.28.2
[INFO] frobbed toml for bio-0.28.2 written to work/ex/beta-1.38-1/sources/1.37.0/reg/bio/0.28.2/Cargo.toml
[INFO] started frobbing bio-0.28.2
[INFO] finished frobbing bio-0.28.2
[INFO] frobbed toml for bio-0.28.2 written to work/ex/beta-1.38-1/sources/beta-2019-08-13/reg/bio/0.28.2/Cargo.toml
[INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+1.37.0" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update"`
[INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+beta-2019-08-13" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update"`
[INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+1.37.0" "fetch" "--locked" "--manifest-path" "Cargo.toml"`
[INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+beta-2019-08-13" "fetch" "--locked" "--manifest-path" "Cargo.toml"`
[INFO] testing bio-0.28.2 against 1.37.0 for beta-1.38-1
[INFO] running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/beta-1.38-1/worker-0/1.37.0:/opt/crater/target:rw,Z" "-v" "/mnt/big/crater/work/ex/beta-1.38-1/sources/1.37.0/reg/bio/0.28.2:/opt/crater/workdir:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/opt/crater/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/opt/crater/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/opt/crater/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/crater/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/crater/cargo-home" "-e" "RUSTUP_HOME=/opt/crater/rustup-home" "-w" "/opt/crater/workdir" "-m" "1536M" "--network" "none" "rustops/crates-build-env" "/opt/crater/cargo-home/bin/cargo" "+1.37.0" "build" "--frozen"`
[INFO] [stdout] 8167bc1f17170f4705ebab30f1fb038ebd0e065ae8656dad33e9293065a0d987
[INFO] running `"docker" "start" "-a" "8167bc1f17170f4705ebab30f1fb038ebd0e065ae8656dad33e9293065a0d987"`
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]    Compiling bio v0.28.2 (/opt/crater/workdir)
[INFO] [stderr]    Compiling strum v0.13.0
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling itertools-num v0.1.3
[INFO] [stderr]    Compiling approx v0.3.2
[INFO] [stderr]    Compiling ndarray v0.12.1
[INFO] [stderr]    Compiling statrs v0.9.0
[INFO] [stderr]    Compiling strum_macros v0.13.0
[INFO] [stderr]    Compiling bstr v0.2.7
[INFO] [stderr]    Compiling multimap v0.4.0
[INFO] [stderr]    Compiling vec_map v0.8.1
[INFO] [stderr]    Compiling bio-types v0.5.1
[INFO] [stderr]    Compiling bv v0.10.0
[INFO] [stderr]    Compiling csv v1.1.1
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 25.24s
[INFO] running `"docker" "inspect" "8167bc1f17170f4705ebab30f1fb038ebd0e065ae8656dad33e9293065a0d987"`
[INFO] running `"docker" "rm" "-f" "8167bc1f17170f4705ebab30f1fb038ebd0e065ae8656dad33e9293065a0d987"`
[INFO] [stdout] 8167bc1f17170f4705ebab30f1fb038ebd0e065ae8656dad33e9293065a0d987
[INFO] running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/beta-1.38-1/worker-0/1.37.0:/opt/crater/target:rw,Z" "-v" "/mnt/big/crater/work/ex/beta-1.38-1/sources/1.37.0/reg/bio/0.28.2:/opt/crater/workdir:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/opt/crater/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/opt/crater/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/opt/crater/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/crater/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/crater/cargo-home" "-e" "RUSTUP_HOME=/opt/crater/rustup-home" "-w" "/opt/crater/workdir" "-m" "1536M" "--network" "none" "rustops/crates-build-env" "/opt/crater/cargo-home/bin/cargo" "+1.37.0" "test" "--frozen" "--no-run"`
[INFO] [stdout] 134af9088039a1f637aeecd2da2069466980190bcf00f6a00f394ed60f5ccb30
[INFO] running `"docker" "start" "-a" "134af9088039a1f637aeecd2da2069466980190bcf00f6a00f394ed60f5ccb30"`
[INFO] [stderr]    Compiling bio v0.28.2 (/opt/crater/workdir)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 22.53s
[INFO] running `"docker" "inspect" "134af9088039a1f637aeecd2da2069466980190bcf00f6a00f394ed60f5ccb30"`
[INFO] running `"docker" "rm" "-f" "134af9088039a1f637aeecd2da2069466980190bcf00f6a00f394ed60f5ccb30"`
[INFO] [stdout] 134af9088039a1f637aeecd2da2069466980190bcf00f6a00f394ed60f5ccb30
[INFO] running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/beta-1.38-1/worker-0/1.37.0:/opt/crater/target:rw,Z" "-v" "/mnt/big/crater/work/ex/beta-1.38-1/sources/1.37.0/reg/bio/0.28.2:/opt/crater/workdir:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/opt/crater/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/opt/crater/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/opt/crater/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/crater/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/crater/cargo-home" "-e" "RUSTUP_HOME=/opt/crater/rustup-home" "-w" "/opt/crater/workdir" "-m" "1536M" "--network" "none" "rustops/crates-build-env" "/opt/crater/cargo-home/bin/cargo" "+1.37.0" "test" "--frozen"`
[INFO] [stdout] b89e4df500bf3321518ef70124a2c92f9e22cce2db62491b8b067ee333f365a6
[INFO] running `"docker" "start" "-a" "b89e4df500bf3321518ef70124a2c92f9e22cce2db62491b8b067ee333f365a6"`
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 0.06s
[INFO] [stderr]      Running /opt/crater/target/debug/deps/bio-fab0e0a1b9637487
[INFO] [stdout] 
[INFO] [stdout] running 271 tests
[INFO] [stdout] test alignment::distance::tests::test_levenshtein_dist ... ok
[INFO] [stdout] test alignment::pairwise::banded::banded::test_aligner_new ... ok
[INFO] [stdout] test alignment::distance::tests::test_hamming_dist_good ... ok
[INFO] [stdout] test alignment::pairwise::banded::banded::test_band_add_entry ... ok
[INFO] [stdout] test alignment::pairwise::banded::banded::test_band_add_kmer ... ok
[INFO] [stdout] test alignment::pairwise::banded::banded::test_blosum62 ... ok
[INFO] [stdout] test alignment::pairwise::banded::banded::test_band_ends_inside ... ok
[INFO] [stdout] test alignment::pairwise::banded::banded::test_global ... ok
[INFO] [stdout] test alignment::pairwise::banded::banded::test_global_affine_ins ... ok
[INFO] [stdout] test alignment::pairwise::banded::banded::test_deletion ... ok
[INFO] [stdout] test alignment::pairwise::banded::banded::test_global_right_del ... ok
[INFO] [stdout] test alignment::pairwise::banded::banded::test_global_affine_ins2 ... ok
[INFO] [stdout] test alignment::pairwise::banded::banded::test_insert_in_between_semiglobal ... ok
[INFO] [stdout] test alignment::pairwise::banded::banded::test_issue11 ... ok
[INFO] [stdout] test alignment::pairwise::banded::banded::test_insert_only_semiglobal ... ok
[INFO] [stdout] test alignment::pairwise::banded::banded::test_issue12_2 ... ok
[INFO] [stdout] test alignment::pairwise::banded::banded::test_band_starts_inside ... ok
[INFO] [stdout] test alignment::pairwise::banded::banded::test_issue12_3 ... ok
[INFO] [stdout] test alignment::pairwise::banded::banded::test_insertion ... ok
[INFO] [stdout] test alignment::pairwise::banded::banded::test_issue12_1 ... ok
[INFO] [stdout] test alignment::pairwise::banded::banded::test_local ... ok
[INFO] [stdout] test alignment::pairwise::banded::banded::test_local_affine_ins2 ... ok
[INFO] [stdout] test alignment::pairwise::banded::banded::test_band_is_fully_inside ... ok
[INFO] [stdout] test alignment::pairwise::banded::banded::test_left_aligned_ins ... ok
[INFO] [stdout] test alignment::pairwise::banded::banded::test_left_aligned_del ... ok
[INFO] [stdout] test alignment::pairwise::banded::banded::test_longer_string_all_operations ... ok
[INFO] [stdout] test alignment::pairwise::banded::banded::test_local_empty ... ok
[INFO] [stdout] test alignment::pairwise::banded::banded::test_overhangs1 ... ok
[INFO] [stdout] test alignment::pairwise::banded::banded::test_semiglobal ... ok
[INFO] [stdout] test alignment::pairwise::banded::banded::test_semiglobal_gap_open_lt_mismatch ... ok
[INFO] [stdout] test alignment::pairwise::banded::banded::test_semiglobal_simple ... ok
[INFO] [stdout] test alignment::pairwise::banded::banded::test_overhangs3 ... ok
[INFO] [stdout] test alignment::pairwise::banded::banded::test_overhangs4 ... ok
[INFO] [stdout] test alignment::pairwise::banded::banded::test_same ... ok
[INFO] [stdout] test alignment::pairwise::banded::banded::test_overhangs2 ... ok
[INFO] [stdout] test alignment::pairwise::banded::banded::test_xclip_prefix_custom ... ok
[INFO] [stdout] test alignment::pairwise::banded::banded::test_yclip_suffix_custom ... ok
[INFO] [stdout] test alignment::pairwise::banded::banded::test_xclip_suffix_custom ... ok
[INFO] [stdout] test alignment::pairwise::tests::test_aligner_new ... ok
[INFO] [stdout] test alignment::pairwise::tests::test_blosum62 ... ok
[INFO] [stdout] test alignment::pairwise::banded::banded::test_yclip_prefix_custom ... ok
[INFO] [stdout] test alignment::pairwise::tests::test_global ... ok
[INFO] [stdout] test alignment::pairwise::tests::test_global_affine_ins2 ... ok
[INFO] [stdout] test alignment::pairwise::banded::banded::test_overhangs5 ... ok
[INFO] [stdout] test alignment::pairwise::tests::test_global_right_del ... ok
[INFO] [stdout] test alignment::pairwise::tests::test_insert_in_between_semiglobal ... ok
[INFO] [stdout] test alignment::pairwise::tests::test_global_affine_ins ... ok
[INFO] [stdout] test alignment::pairwise::banded::banded::test_substitutions ... ok
[INFO] [stdout] test alignment::pairwise::tests::test_issue11 ... ok
[INFO] [stdout] test alignment::pairwise::tests::test_insert_only_semiglobal ... ok
[INFO] [stdout] test alignment::pairwise::tests::test_issue12_1 ... ok
[INFO] [stdout] test alignment::pairwise::tests::test_issue12_2 ... ok
[INFO] [stdout] test alignment::pairwise::tests::test_local ... ok
[INFO] [stdout] test alignment::pairwise::tests::test_local_affine_ins2 ... ok
[INFO] [stdout] test alignment::pairwise::tests::test_left_aligned_ins ... ok
[INFO] [stdout] test alignment::pairwise::tests::test_scoring_from_scores ... ok
[INFO] [stdout] test alignment::pairwise::tests::test_semiglobal ... ok
[INFO] [stdout] test alignment::pairwise::tests::test_xclip_prefix_custom ... ok
[INFO] [stdout] test alignment::pairwise::tests::test_xclip_suffix_custom ... ok
[INFO] [stdout] test alignment::pairwise::tests::test_longer_string_all_operations ... ok
[INFO] [stdout] test alignment::pairwise::tests::test_semiglobal_simple ... ok
[INFO] [stdout] test alignment::pairwise::tests::test_semiglobal_gap_open_lt_mismatch ... ok
[INFO] [stdout] test alignment::pairwise::tests::test_issue12_3 ... ok
[INFO] [stdout] test alignment::pairwise::tests::test_left_aligned_del ... ok
[INFO] [stdout] test alignment::poa::tests::test_alt_branched_alignment ... ok
[INFO] [stdout] test alignment::poa::tests::test_branched_alignment ... ok
[INFO] [stdout] test alignment::poa::tests::test_alignment ... ok
[INFO] [stdout] test alignment::pairwise::tests::traceback_cell ... ok
[INFO] [stdout] test alignment::pairwise::tests::test_yclip_suffix_custom ... ok
[INFO] [stdout] test alignment::sparse::sparse_alignment::test_find_kmer_matches ... ok
[INFO] [stdout] test alignment::poa::tests::test_init_graph ... ok
[INFO] [stdout] test alignment::pairwise::tests::test_yclip_prefix_custom ... ok
[INFO] [stdout] test alignment::poa::tests::test_poa_method_chaining ... ok
[INFO] [stdout] test alignment::poa::tests::test_insertion_on_branch ... ok
[INFO] [stdout] test alignment::sparse::sparse_alignment::test_expanded_matches ... ok
[INFO] [stdout] test alignment::sparse::sparse_alignment::test_lcskpp0 ... ok
[INFO] [stdout] test alignment::sparse::sparse_alignment::test_lcskpp1 ... ok
[INFO] [stdout] test alignment::sparse::sparse_alignment::test_sdp1 ... ok
[INFO] [stdout] test alignment::sparse::sparse_alignment::test_sdp2 ... ok
[INFO] [stdout] test alignment::sparse::sparse_alignment::test_sdpkpp_same ... ok
[INFO] [stdout] test alignment::sparse::sparse_alignment::test_lcskpp_same ... ok
[INFO] [stdout] test alignment::sparse::sparse_alignment::test_lcskpp2 ... ok
[INFO] [stdout] test alignment::sparse::sparse_alignment::test_sdp ... ok
[INFO] [stdout] test alphabets::protein::tests::is_no_word ... ok
[INFO] [stdout] test alphabets::protein::tests::is_word ... ok
[INFO] [stdout] test alphabets::rna::tests::is_word ... ok
[INFO] [stdout] test alphabets::protein::tests::symbol_is_no_word ... ok
[INFO] [stdout] test alphabets::protein::tests::number_is_no_word ... ok
[INFO] [stdout] test alphabets::rna::tests::number_is_no_word ... ok
[INFO] [stdout] test alphabets::rna::tests::symbol_is_no_word ... ok
[INFO] [stdout] test alphabets::rna::tests::test_reverse_complement ... ok
[INFO] [stdout] test alphabets::rna::tests::is_no_word ... ok
[INFO] [stdout] test alignment::sparse::sparse_alignment::test_sdpkpp_tandem_repeat ... ok
[INFO] [stdout] test data_structures::annot_map::tests::lookup ... ok
[INFO] [stdout] test data_structures::bit_tree::test_bit_tree::test_bit_tree ... ok
[INFO] [stdout] test data_structures::bitenc::tests::test_bitenc ... ok
[INFO] [stdout] test alignment::sparse::sparse_alignment::test_lcskpp_tandem_repeat ... ok
[INFO] [stdout] test data_structures::bitenc::tests::test_push_values ... ok
[INFO] [stdout] test data_structures::bwt::tests::test_bwtfind ... ok
[INFO] [stdout] test data_structures::bwt::tests::test_invert_bwt ... ok
[INFO] [stdout] test data_structures::bwt::tests::test_occ ... ok
[INFO] [stdout] test data_structures::annot_map::tests::overlaps ... ok
[INFO] [stdout] test data_structures::fmindex::tests::test_init_interval ... ok
[INFO] [stdout] test data_structures::fmindex::tests::test_fmindex ... ok
[INFO] [stdout] test alignment::distance::tests::test_hamming_dist_bad ... ok
[INFO] [stdout] test data_structures::interval_tree::tests::test_insertion_and_intersection ... ok
[INFO] [stdout] test data_structures::bitenc::tests::test_issue29 ... ok
[INFO] [stdout] test data_structures::fmindex::tests::test_smems ... ok
[INFO] [stdout] test data_structures::qgram_index::tests::test_exact_matches ... ok
[INFO] [stdout] test data_structures::qgram_index::tests::test_exact_matches_self ... ok
[INFO] [stdout] test data_structures::qgram_index::tests::test_matches ... ok
[INFO] [stdout] test data_structures::interval_tree::tests::iter_mut ... ok
[INFO] [stdout] test data_structures::interval_tree::tests::from_iterator ... ok
[INFO] [stdout] test data_structures::qgram_index::tests::test_qgram_matches ... ok
[INFO] [stdout] test data_structures::interval_tree::tests::zero_width_ranges ... ok
[INFO] [stdout] test data_structures::rank_select::tests::test_select ... ok
[INFO] [stdout] test data_structures::rank_select::tests::test_rank_select2 ... ok
[INFO] [stdout] test data_structures::rank_select::tests::test_rank_select ... ok
[INFO] [stdout] test data_structures::rank_select::tests::test_rank_k ... ok
[INFO] [stdout] test data_structures::rank_select::tests::test_select_end ... ok
[INFO] [stdout] test data_structures::rank_select::tests::test_select_start ... ok
[INFO] [stdout] test data_structures::rank_select::tests::test_single_select ... ok
[INFO] [stdout] test data_structures::suffix_array::tests::test_buckets ... ok
[INFO] [stdout] test data_structures::suffix_array::tests::test_lms_pos ... ok
[INFO] [stdout] test data_structures::suffix_array::tests::test_pos ... ok
[INFO] [stdout] test data_structures::suffix_array::tests::test_handles_sentinels_properly ... ok
[INFO] [stdout] test data_structures::suffix_array::tests::test_pos_types ... ok
[INFO] [stdout] test data_structures::suffix_array::tests::test_issue10_2 ... ok
[INFO] [stdout] test data_structures::suffix_array::tests::test_issue10_1 ... ok
[INFO] [stdout] test alignment::pairwise::banded::banded::test_big ... ok
[INFO] [stdout] test io::fasta::tests::test_faread_trait ... ok
[INFO] [stdout] test io::bed::tests::test_writer ... ok
[INFO] [stdout] test io::bed::tests::spliced_to_bed ... ok
[INFO] [stdout] test io::bed::tests::test_reader ... ok
[INFO] [stdout] test data_structures::suffix_array::tests::test_sorts_lexically ... ok
[INFO] [stdout] test io::fasta::tests::test_indexed_reader_all ... ok
[INFO] [stdout] test io::fasta::tests::test_indexed_reader ... ok
[INFO] [stdout] test io::fasta::tests::test_indexed_reader_bad_reader ... ok
[INFO] [stdout] test io::fasta::tests::test_indexed_reader_crlf_all ... ok
[INFO] [stdout] test io::fasta::tests::test_indexed_reader_crlf ... ok
[INFO] [stdout] test io::fasta::tests::test_index_sequences ... ok
[INFO] [stdout] test io::fasta::tests::test_indexed_reader_by_rid_all ... ok
[INFO] [stdout] test io::fasta::tests::test_indexed_reader_iter_by_rid_all ... ok
[INFO] [stdout] test io::fasta::tests::test_indexed_reader_iter ... ok
[INFO] [stdout] test io::fasta::tests::test_indexed_reader_iter_all ... ok
[INFO] [stdout] test io::fasta::tests::test_indexed_reader_crlf_by_rid_all ... ok
[INFO] [stdout] test data_structures::interval_tree::tests::test_insertion_and_intersection_2 ... ok
[INFO] [stdout] test io::fasta::tests::test_indexed_reader_iter_seek_fails ... ok
[INFO] [stdout] test io::fasta::tests::test_indexed_reader_iter_size_hint ... ok
[INFO] [stdout] test io::fasta::tests::test_indexed_reader_no_fetch_read_fails ... ok
[INFO] [stdout] test io::fasta::tests::test_indexed_reader_no_fetch_read_iter_fails ... ok
[INFO] [stdout] test io::fasta::tests::test_indexed_reader_no_trailing_lf ... ok
[INFO] [stdout] test io::fasta::tests::test_indexed_reader_read_seek_fails ... ok
[INFO] [stdout] test io::fasta::tests::test_indexed_reader_read_read_fails ... ok
[INFO] [stdout] test io::fasta::tests::test_reader ... ok
[INFO] [stdout] test io::fasta::tests::test_reader_no_id ... ok
[INFO] [stdout] test io::fasta::tests::test_reader_non_ascii_sequence ... ok
[INFO] [stdout] test io::fasta::tests::test_reader_read_fails ... ok
[INFO] [stdout] test io::fasta::tests::test_indexed_reader_iter_crlf ... ok
[INFO] [stdout] test io::fasta::tests::test_indexed_reader_iter_crlf_all ... ok
[INFO] [stdout] test io::fasta::tests::test_indexed_reader_iter_crlf_by_rid_all ... ok
[INFO] [stdout] test io::fasta::tests::test_indexed_reader_iter_read_fails ... ok
[INFO] [stdout] test io::fasta::tests::test_reader_read_fails_iter ... ok
[INFO] [stdout] test io::fastq::tests::test_reader ... ok
[INFO] [stdout] test io::fasta::tests::test_reader_wrong_header ... ok
[INFO] [stdout] test io::fastq::tests::test_fqread_trait ... ok
[INFO] [stdout] test io::fastq::tests::test_writer ... ok
[INFO] [stdout] test io::fasta::tests::test_indexed_reader_reused_buffer ... ok
[INFO] [stdout] test io::fastq::tests::test_record_with_attrs ... ok
[INFO] [stdout] test io::gff::tests::test_reader_gtf2_2 ... ok
[INFO] [stdout] test io::gff::tests::test_convert_gtf2_to_gff3 ... ok
[INFO] [stdout] test io::fasta::tests::test_record_with_attrs ... ok
[INFO] [stdout] test io::fasta::tests::test_writer ... ok
[INFO] [stdout] test data_structures::fmindex::tests::test_issue39 ... ok
[INFO] [stdout] test pattern_matching::bom::tests::test_delta ... ok
[INFO] [stdout] test io::gff::tests::test_reader_gtf2 ... ok
[INFO] [stdout] test pattern_matching::horspool::tests::test_find_all ... ok
[INFO] [stdout] test pattern_matching::bom::tests::test_find_all ... ok
[INFO] [stdout] test pattern_matching::horspool::tests::test_shift ... ok
[INFO] [stdout] test pattern_matching::kmp::tests::test_delta ... ok
[INFO] [stdout] test pattern_matching::kmp::tests::test_find_all ... ok
[INFO] [stdout] test pattern_matching::kmp::tests::test_find_all_at_start ... ok
[INFO] [stdout] test pattern_matching::kmp::tests::test_lps ... ok
[INFO] [stdout] test io::gff::tests::test_reader_gtf2_dup_attr_keys ... ok
[INFO] [stdout] test io::gff::tests::test_reader_gff3 ... ok
[INFO] [stdout] test io::gff::tests::test_writer_gtf2 ... ok
[INFO] [stdout] test pattern_matching::bndm::tests::test_find_all ... ok
[INFO] [stdout] test pattern_matching::myers::long::tests::test_full_position ... ok
[INFO] [stdout] test pattern_matching::myers::long::tests::test_find_all_end ... ok
[INFO] [stdout] test pattern_matching::myers::long::tests::test_long_shorter ... ok
[INFO] [stdout] test pattern_matching::myers::long::tests::test_ambig ... ok
[INFO] [stdout] test pattern_matching::myers::long::tests::test_distance ... ok
[INFO] [stdout] test pattern_matching::myers::long::tests::test_large_dist ... ok
[INFO] [stdout] test pattern_matching::myers::long::tests::test_alignment ... ok
[INFO] [stdout] test pattern_matching::myers::long::tests::test_traceback_path2 ... ok
[INFO] [stdout] test pattern_matching::myers::long::tests::test_shorter ... ok
[INFO] [stdout] test pattern_matching::myers::long::tests::test_traceback_path ... ok
[INFO] [stdout] test pattern_matching::myers::long::tests::test_position_cmp ... ok
[INFO] [stdout] test pattern_matching::myers::long::tests::test_path_at ... ok
[INFO] [stdout] test pattern_matching::myers::long::tests::test_longest_possible ... ok
[INFO] [stdout] test pattern_matching::myers::tests::test_full_position ... ok
[INFO] [stdout] test pattern_matching::myers::tests::test_find_all_end ... ok
[INFO] [stdout] test pattern_matching::myers::tests::test_large_dist ... ok
[INFO] [stdout] test pattern_matching::myers::tests::test_alignment ... ok
[INFO] [stdout] test pattern_matching::myers::tests::test_ambig ... ok
[INFO] [stdout] test pattern_matching::myers::tests::test_distance ... ok
[INFO] [stdout] test pattern_matching::myers::tests::test_long_shorter ... ok
[INFO] [stdout] test pattern_matching::myers::tests::test_longest_possible ... ok
[INFO] [stdout] test pattern_matching::myers::tests::test_path_at ... ok
[INFO] [stdout] test pattern_matching::myers::tests::test_traceback_path2 ... ok
[INFO] [stdout] test pattern_matching::myers::tests::test_shorter ... ok
[INFO] [stdout] test pattern_matching::myers::tests::test_position_cmp ... ok
[INFO] [stdout] test pattern_matching::myers::tests::test_traceback_path ... ok
[INFO] [stdout] test pattern_matching::pssm::dnamotif::tests::simple_pssm ... ok
[INFO] [stdout] test pattern_matching::pssm::dnamotif::tests::test_info_content ... ok
[INFO] [stdout] test pattern_matching::pssm::dnamotif::tests::test_inconsist_err ... ok
[INFO] [stdout] test pattern_matching::pssm::dnamotif::tests::find_motif ... ok
[INFO] [stdout] test io::gff::tests::test_writer_gff3 ... ok
[INFO] [stdout] test pattern_matching::pssm::dnamotif::tests::test_mono_err ... ok
[INFO] [stdout] test pattern_matching::shift_and::tests::test_find_all ... ok
[INFO] [stdout] test pattern_matching::pssm::protmotif::tests::test_inconsist_err ... ok
[INFO] [stdout] test pattern_matching::pssm::protmotif::tests::test_mono_err ... ok
[INFO] [stdout] test pattern_matching::pssm::protmotif::tests::test_scoring ... ok
[INFO] [stdout] test pattern_matching::pssm::protmotif::tests::test_info_content ... ok
[INFO] [stdout] test pattern_matching::ukkonen::tests::test_find_all_end ... ok
[INFO] [stdout] test pattern_matching::ukkonen::tests::test_find_start ... ok
[INFO] [stdout] test scores::blosum62::tests::test_blosum62 ... ok
[INFO] [stdout] test scores::pam120::tests::test_pam120 ... ok
[INFO] [stdout] test scores::pam200::tests::test_pam200 ... ok
[INFO] [stdout] test seq_analysis::gc::tests::test_gc_content ... ok
[INFO] [stdout] test stats::bayesian::tests::test_expected_fdr ... ok
[INFO] [stdout] test seq_analysis::orf::tests::test_orf ... ok
[INFO] [stdout] test stats::combinatorics::tests::test_comb_scaled ... ok
[INFO] [stdout] test stats::bayesian::bayes_factors::tests::test_bayes_factor ... ok
[INFO] [stdout] test stats::combinatorics::tests::test_comb ... ok
[INFO] [stdout] test stats::hmm::tests::test_discrete_backward_toy_example ... ok
[INFO] [stdout] test stats::hmm::tests::test_discrete_viterbi_toy_example ... ok
[INFO] [stdout] test stats::hmm::tests::test_gaussian_backward_simple_example ... ok
[INFO] [stdout] test stats::hmm::tests::test_gaussian_forward_equals_backward_simple_example ... ok
[INFO] [stdout] test stats::hmm::tests::test_gaussian_forward_simple_example ... ok
[INFO] [stdout] test stats::hmm::tests::test_gaussian_viterbi_simple_example ... ok
[INFO] [stdout] test stats::pairhmm::tests::test_deletion ... ok
[INFO] [stdout] test stats::pairhmm::tests::test_insertion ... ok
[INFO] [stdout] test stats::hmm::tests::test_discrete_forward_toy_example ... ok
[INFO] [stdout] test pattern_matching::myers::tests::test_pattern_too_long ... ok
[INFO] [stdout] test pattern_matching::myers::tests::test_pattern_too_long_builder ... ok
[INFO] [stdout] test stats::pairhmm::tests::test_same ... ok
[INFO] [stdout] test stats::probs::tests::test_cap_numerical_overshoot ... ok
[INFO] [stdout] test stats::pairhmm::tests::test_mismatch ... ok
[INFO] [stdout] test stats::probs::tests::test_cap_numerical_overshoot_panic ... ok
[INFO] [stdout] test stats::probs::cdf::test::test_cdf ... ok
[INFO] [stdout] test stats::probs::tests::test_one_minus ... ok
[INFO] [stdout] test scores::pam40::tests::test_pam40 ... ok
[INFO] [stdout] test scores::pam250::tests::test_pam250 ... ok
[INFO] [stdout] test stats::probs::tests::test_simpsons_integrate ... ok
[INFO] [stdout] test stats::probs::tests::test_sub ... ok
[INFO] [stdout] test stats::probs::tests::test_sum_one_zero ... ok
[INFO] [stdout] test stats::pairhmm::tests::test_large ... ok
[INFO] [stdout] test stats::probs::tests::test_cumsum ... ok
[INFO] [stdout] test stats::probs::tests::test_empty_sum ... ok
[INFO] [stdout] test utils::fastexp::tests::test_fastexp ... ok
[INFO] [stdout] test stats::probs::tests::test_sum ... ok
[INFO] [stdout] test stats::probs::tests::test_trapezoidal_integrate ... ok
[INFO] [stdout] test utils::interval::tests::range_interval_conversions ... ok
[INFO] [stdout] test utils::interval::tests::negative_width_range ... ok
[INFO] [stdout] test stats::probs::tests::test_zero ... ok
[INFO] [stdout] test utils::text::tests::test_print_sequence ... ok
[INFO] [stdout] test utils::tests::test_scan ... ok
[INFO] [stdout] test utils::tests::test_prescan ... ok
[INFO] [stdout] test data_structures::interpolation_table::tests::test_interpolation_table ... ok
[INFO] [stdout] test stats::hmm::tests::test_discrete_forward_equals_backward_toy_example ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 271 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests bio
[INFO] [stdout] 
[INFO] [stdout] running 61 tests
[INFO] [stdout] test <::custom_derive::custom_derive macros> - stats::probs::LogProb (line 50) ... ok
[INFO] [stdout] test <::custom_derive::custom_derive macros> - stats::probs::Prob (line 46) ... ok
[INFO] [stdout] test <::custom_derive::custom_derive macros> - stats::probs::PHREDProb (line 46) ... ok
[INFO] [stdout] test src/alignment/distance.rs - alignment::distance::hamming (line 16) ... ok
[INFO] [stdout] test src/alignment/distance.rs - alignment::distance::levenshtein (line 48) ... ok
[INFO] [stdout] test src/alignment/poa.rs - alignment::poa (line 19) ... ok
[INFO] [stdout] test src/alignment/pairwise/banded.rs - alignment::pairwise::banded (line 20) ... ok
[INFO] [stdout] test src/alignment/pairwise/mod.rs - alignment::pairwise (line 13) ... ok
[INFO] [stdout] test src/alignment/sparse.rs - alignment::sparse (line 18) ... ok
[INFO] [stdout] test src/alphabets/rna.rs - alphabets::rna (line 10) ... ok
[INFO] [stdout] test src/data_structures/annot_map.rs - data_structures::annot_map::AnnotMap<R, T>::find (line 92) ... ok
[INFO] [stdout] test src/alphabets/dna.rs - alphabets::dna (line 10) ... ok
[INFO] [stdout] test src/alphabets/mod.rs - alphabets (line 10) ... ok
[INFO] [stdout] test src/data_structures/annot_map.rs - data_structures::annot_map::AnnotMap<R, T>::new (line 39) ... ok
[INFO] [stdout] test src/alphabets/protein.rs - alphabets::protein (line 10) ... ok
[INFO] [stdout] test src/data_structures/annot_map.rs - data_structures::annot_map::AnnotMap<R, T>::insert_at (line 58) ... ok
[INFO] [stdout] test src/data_structures/bit_tree.rs - data_structures::bit_tree (line 12) ... ok
[INFO] [stdout] test src/data_structures/fmindex.rs - data_structures::fmindex (line 32) ... ok
[INFO] [stdout] test src/data_structures/bwt.rs - data_structures::bwt::bwt (line 32) ... ok
[INFO] [stdout] test src/data_structures/bitenc.rs - data_structures::bitenc (line 11) ... ok
[INFO] [stdout] test src/data_structures/fmindex.rs - data_structures::fmindex (line 12) ... ok
[INFO] [stdout] test src/data_structures/interval_tree.rs - data_structures::interval_tree (line 14) ... ok
[INFO] [stdout] test src/data_structures/fmindex.rs - data_structures::fmindex::FMIndexable::backward_search (line 96) ... ok
[INFO] [stdout] test src/data_structures/fmindex.rs - data_structures::fmindex::FMDIndex<DBWT, DLess, DOcc>::smems (line 258) ... ok
[INFO] [stdout] test src/data_structures/rank_select.rs - data_structures::rank_select (line 11) ... ok
[INFO] [stdout] test src/data_structures/qgram_index.rs - data_structures::qgram_index (line 10) ... ok
[INFO] [stdout] test src/data_structures/suffix_array.rs - data_structures::suffix_array::lcp (line 239) ... ok
[INFO] [stdout] test src/data_structures/smallints.rs - data_structures::smallints (line 13) ... ok
[INFO] [stdout] test src/data_structures/suffix_array.rs - data_structures::suffix_array::shortest_unique_substrings (line 304) ... ok
[INFO] [stdout] test src/io/bed.rs - io::bed (line 10) ... ok
[INFO] [stdout] test src/data_structures/suffix_array.rs - data_structures::suffix_array::suffix_array (line 198) ... ok
[INFO] [stdout] test src/io/fasta.rs - io::fasta::Reader<R>::new (line 54) ... ok
[INFO] [stdout] test src/io/bed.rs - io::bed::Record (line 314) ... ok
[INFO] [stdout] test src/io/fasta.rs - io::fasta (line 10) ... ok
[INFO] [stdout] test src/io/bed.rs - io::bed::annot::contig::Contig<String, strand::Strand>::from (line 237) ... ok
[INFO] [stdout] test src/io/fastq.rs - io::fastq (line 10) ... ok
[INFO] [stdout] test src/io/fasta.rs - io::fasta::Reader<R>::read (line 119) ... ok
[INFO] [stdout] test src/io/fasta.rs - io::fasta::Reader<R>::records (line 74) ... ok
[INFO] [stdout] test src/io/gff.rs - io::gff (line 14) ... ok
[INFO] [stdout] test src/io/fastq.rs - io::fastq::Reader<R>::read (line 81) ... ok
[INFO] [stdout] test src/lib.rs -  (line 31) ... ok
[INFO] [stdout] test src/lib.rs -  (line 54) ... ok
[INFO] [stdout] test src/pattern_matching/bndm.rs - pattern_matching::bndm (line 12) ... ok
[INFO] [stdout] test src/pattern_matching/bom.rs - pattern_matching::bom (line 12) ... ok
[INFO] [stdout] test src/pattern_matching/horspool.rs - pattern_matching::horspool (line 32) ... ok
[INFO] [stdout] test src/pattern_matching/kmp.rs - pattern_matching::kmp (line 16) ... ok
[INFO] [stdout] test src/pattern_matching/myers/builder.rs - pattern_matching::myers::builder::MyersBuilder (line 13) ... ok
[INFO] [stdout] test src/pattern_matching/myers/builder.rs - pattern_matching::myers::builder::MyersBuilder::ambig (line 67) ... ok
[INFO] [stdout] test src/pattern_matching/myers/builder.rs - pattern_matching::myers::builder::MyersBuilder::build (line 149) ... ok
[INFO] [stdout] test src/pattern_matching/myers/builder.rs - pattern_matching::myers::builder::MyersBuilder::text_wildcard (line 102) ... ok
[INFO] [stdout] test src/pattern_matching/myers/mod.rs - pattern_matching::myers (line 109) ... ok
[INFO] [stdout] test src/pattern_matching/myers/mod.rs - pattern_matching::myers (line 172) ... ok
[INFO] [stdout] test src/pattern_matching/myers/mod.rs - pattern_matching::myers (line 216) ... ok
[INFO] [stdout] test src/pattern_matching/myers/mod.rs - pattern_matching::myers (line 29) ... ok
[INFO] [stdout] test src/pattern_matching/myers/mod.rs - pattern_matching::myers (line 54) ... ok
[INFO] [stdout] test src/seq_analysis/orf.rs - seq_analysis::orf (line 12) ... ok
[INFO] [stdout] test src/pattern_matching/myers/mod.rs - pattern_matching::myers (line 89) ... ok
[INFO] [stdout] test src/pattern_matching/ukkonen.rs - pattern_matching::ukkonen (line 17) ... ok
[INFO] [stdout] test src/pattern_matching/shift_and.rs - pattern_matching::shift_and (line 12) ... ok
[INFO] [stdout] test src/stats/hmm.rs - stats::hmm (line 37) ... ok
[INFO] [stdout] test src/stats/hmm.rs - stats::hmm (line 15) ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 61 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
[INFO] [stdout] 
[INFO] running `"docker" "inspect" "b89e4df500bf3321518ef70124a2c92f9e22cce2db62491b8b067ee333f365a6"`
[INFO] running `"docker" "rm" "-f" "b89e4df500bf3321518ef70124a2c92f9e22cce2db62491b8b067ee333f365a6"`
[INFO] [stdout] b89e4df500bf3321518ef70124a2c92f9e22cce2db62491b8b067ee333f365a6