[INFO] updating cached repository zaeleus/noodles-fpkm [INFO] running `"git" "fetch" "--all"` [INFO] [stdout] Fetching origin [INFO] [stderr] From git://github.com/zaeleus/noodles-fpkm [INFO] [stderr] * branch HEAD -> FETCH_HEAD [INFO] running `"git" "clone" "work/cache/sources/gh/zaeleus/noodles-fpkm" "work/ex/beta-1.38-1/sources/1.37.0/gh/zaeleus/noodles-fpkm"` [INFO] [stderr] Cloning into 'work/ex/beta-1.38-1/sources/1.37.0/gh/zaeleus/noodles-fpkm'... [INFO] [stderr] done. [INFO] running `"git" "clone" "work/cache/sources/gh/zaeleus/noodles-fpkm" "work/ex/beta-1.38-1/sources/beta-2019-08-13/gh/zaeleus/noodles-fpkm"` [INFO] [stderr] Cloning into 'work/ex/beta-1.38-1/sources/beta-2019-08-13/gh/zaeleus/noodles-fpkm'... [INFO] [stderr] done. [INFO] running `"git" "rev-parse" "HEAD"` [INFO] [stdout] 16fcd4da35d307ff5db175b605e8b5494aec9cd3 [INFO] sha for GitHub repo zaeleus/noodles-fpkm: 16fcd4da35d307ff5db175b605e8b5494aec9cd3 [INFO] validating manifest of zaeleus/noodles-fpkm on toolchain 1.37.0 [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+1.37.0" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] validating manifest of zaeleus/noodles-fpkm on toolchain beta-2019-08-13 [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+beta-2019-08-13" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] started frobbing zaeleus/noodles-fpkm [INFO] finished frobbing zaeleus/noodles-fpkm [INFO] frobbed toml for zaeleus/noodles-fpkm written to work/ex/beta-1.38-1/sources/1.37.0/gh/zaeleus/noodles-fpkm/Cargo.toml [INFO] started frobbing zaeleus/noodles-fpkm [INFO] finished frobbing zaeleus/noodles-fpkm [INFO] frobbed toml for zaeleus/noodles-fpkm written to work/ex/beta-1.38-1/sources/beta-2019-08-13/gh/zaeleus/noodles-fpkm/Cargo.toml [INFO] crate zaeleus/noodles-fpkm already has a lockfile, it will not be regenerated [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+1.37.0" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+beta-2019-08-13" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] testing zaeleus/noodles-fpkm against 1.37.0 for beta-1.38-1 [INFO] running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/beta-1.38-1/worker-2/1.37.0:/opt/crater/target:rw,Z" "-v" "/mnt/big/crater/work/ex/beta-1.38-1/sources/1.37.0/gh/zaeleus/noodles-fpkm:/opt/crater/workdir:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/opt/crater/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/opt/crater/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/opt/crater/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/crater/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/crater/cargo-home" "-e" "RUSTUP_HOME=/opt/crater/rustup-home" "-w" "/opt/crater/workdir" "-m" "1536M" "--network" "none" "rustops/crates-build-env" "/opt/crater/cargo-home/bin/cargo" "+1.37.0" "build" "--frozen"` [INFO] [stdout] d81b97e777e56db7e8256158adb1822b88807c3494e6ccb0f36865e1e907b857 [INFO] running `"docker" "start" "-a" "d81b97e777e56db7e8256158adb1822b88807c3494e6ccb0f36865e1e907b857"` [INFO] [stderr] Compiling libc v0.2.47 [INFO] [stderr] Compiling serde v1.0.84 [INFO] [stderr] Compiling memchr v2.1.2 [INFO] [stderr] Compiling miniz-sys v0.1.11 [INFO] [stderr] Compiling atty v0.2.11 [INFO] [stderr] Compiling flate2 v1.0.6 [INFO] [stderr] Compiling clap v2.32.0 [INFO] [stderr] Compiling aho-corasick v0.6.9 [INFO] [stderr] Compiling csv-core v0.1.5 [INFO] [stderr] Compiling regex v1.1.0 [INFO] [stderr] Compiling env_logger v0.6.0 [INFO] [stderr] Compiling csv v1.0.5 [INFO] [stderr] Compiling noodles v0.1.0 (https://github.com/zaeleus/noodles.git#521009a6) [INFO] [stderr] Compiling noodles-fpkm v0.1.0 (/opt/crater/workdir) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 44.57s [INFO] running `"docker" "inspect" "d81b97e777e56db7e8256158adb1822b88807c3494e6ccb0f36865e1e907b857"` [INFO] running `"docker" "rm" "-f" "d81b97e777e56db7e8256158adb1822b88807c3494e6ccb0f36865e1e907b857"` [INFO] [stdout] d81b97e777e56db7e8256158adb1822b88807c3494e6ccb0f36865e1e907b857 [INFO] running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/beta-1.38-1/worker-2/1.37.0:/opt/crater/target:rw,Z" "-v" "/mnt/big/crater/work/ex/beta-1.38-1/sources/1.37.0/gh/zaeleus/noodles-fpkm:/opt/crater/workdir:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/opt/crater/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/opt/crater/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/opt/crater/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/crater/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/crater/cargo-home" "-e" "RUSTUP_HOME=/opt/crater/rustup-home" "-w" "/opt/crater/workdir" "-m" "1536M" "--network" "none" "rustops/crates-build-env" "/opt/crater/cargo-home/bin/cargo" "+1.37.0" "test" "--frozen" "--no-run"` [INFO] [stdout] 97c319579f67fb5ac136ee4d3984cd8d452abec8e4ef19a7aaad981d84986567 [INFO] running `"docker" "start" "-a" "97c319579f67fb5ac136ee4d3984cd8d452abec8e4ef19a7aaad981d84986567"` [INFO] [stderr] Compiling noodles-fpkm v0.1.0 (/opt/crater/workdir) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 3.78s [INFO] running `"docker" "inspect" "97c319579f67fb5ac136ee4d3984cd8d452abec8e4ef19a7aaad981d84986567"` [INFO] running `"docker" "rm" "-f" "97c319579f67fb5ac136ee4d3984cd8d452abec8e4ef19a7aaad981d84986567"` [INFO] [stdout] 97c319579f67fb5ac136ee4d3984cd8d452abec8e4ef19a7aaad981d84986567 [INFO] running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/beta-1.38-1/worker-2/1.37.0:/opt/crater/target:rw,Z" "-v" "/mnt/big/crater/work/ex/beta-1.38-1/sources/1.37.0/gh/zaeleus/noodles-fpkm:/opt/crater/workdir:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/opt/crater/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/opt/crater/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/opt/crater/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/crater/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/crater/cargo-home" "-e" "RUSTUP_HOME=/opt/crater/rustup-home" "-w" "/opt/crater/workdir" "-m" "1536M" "--network" "none" "rustops/crates-build-env" "/opt/crater/cargo-home/bin/cargo" "+1.37.0" "test" "--frozen"` [INFO] [stdout] 62cf2b23d79cfde24ad874ed874e8615ad2d6e7d7beb2c29ddfc5cb1ef87d241 [INFO] running `"docker" "start" "-a" "62cf2b23d79cfde24ad874ed874e8615ad2d6e7d7beb2c29ddfc5cb1ef87d241"` [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 0.09s [INFO] [stderr] Running /opt/crater/target/debug/deps/noodles_fpkm-bf7b0de8619f8f47 [INFO] [stdout] [INFO] [stdout] running 10 tests [INFO] [stdout] test counts::tests::test_parse_name ... ok [INFO] [stdout] test counts::tests::test_parse_count ... ok [INFO] [stdout] test counts::tests::test_insert_count ... ok [INFO] [stdout] test tests::test_calculate_fpkms_with_missing_feature ... ok [INFO] [stdout] test tests::test_calculate_fpkms_is_ordered_by_feature_id ... ok [INFO] [stdout] test tests::test_calculate_fpkms ... ok [INFO] [stdout] test counts::tests::test_read_counts_with_duplicate_identifiers ... ok [INFO] [stdout] test tests::test_calculate_fpkm ... ok [INFO] [stdout] test tests::test_calculate_tpm ... ok [INFO] [stdout] test tests::test_sum_nonoverlapping_interval_lengths ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 10 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] [stderr] Running /opt/crater/target/debug/deps/noodles_fpkm-8278a70417b5ad05 [INFO] [stdout] [INFO] [stdout] running 1 test [INFO] [stdout] test tests::test_write_expressions ... ok [INFO] [stderr] Doc-tests noodles-fpkm [INFO] [stdout] [INFO] [stdout] test result: ok. 1 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 5 tests [INFO] [stdout] test src/features.rs - features::merge_intervals (line 56) ... ok [INFO] [stdout] test src/features.rs - features::Feature::len (line 23) ... ok [INFO] [stdout] test src/counts.rs - counts::sum_counts (line 109) ... ok [INFO] [stdout] test src/counts.rs - counts::read_counts (line 28) ... ok [INFO] [stdout] test src/features.rs - features::read_features (line 103) ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 5 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] running `"docker" "inspect" "62cf2b23d79cfde24ad874ed874e8615ad2d6e7d7beb2c29ddfc5cb1ef87d241"` [INFO] running `"docker" "rm" "-f" "62cf2b23d79cfde24ad874ed874e8615ad2d6e7d7beb2c29ddfc5cb1ef87d241"` [INFO] [stdout] 62cf2b23d79cfde24ad874ed874e8615ad2d6e7d7beb2c29ddfc5cb1ef87d241