[INFO] updating cached repository guertinlab/kmer_mask_em [INFO] running `"git" "fetch" "--all"` [INFO] [stdout] Fetching origin [INFO] [stderr] From git://github.com/guertinlab/kmer_mask_em [INFO] [stderr] * branch HEAD -> FETCH_HEAD [INFO] running `"git" "clone" "work/cache/sources/gh/guertinlab/kmer_mask_em" "work/ex/beta-1.38-1/sources/1.37.0/gh/guertinlab/kmer_mask_em"` [INFO] [stderr] Cloning into 'work/ex/beta-1.38-1/sources/1.37.0/gh/guertinlab/kmer_mask_em'... [INFO] [stderr] done. [INFO] running `"git" "clone" "work/cache/sources/gh/guertinlab/kmer_mask_em" "work/ex/beta-1.38-1/sources/beta-2019-08-13/gh/guertinlab/kmer_mask_em"` [INFO] [stderr] Cloning into 'work/ex/beta-1.38-1/sources/beta-2019-08-13/gh/guertinlab/kmer_mask_em'... [INFO] [stderr] done. [INFO] running `"git" "rev-parse" "HEAD"` [INFO] [stdout] c1ae4fc642bd6330c9db7a4cf31f9b304ff6a874 [INFO] sha for GitHub repo guertinlab/kmer_mask_em: c1ae4fc642bd6330c9db7a4cf31f9b304ff6a874 [INFO] validating manifest of guertinlab/kmer_mask_em on toolchain 1.37.0 [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+1.37.0" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] validating manifest of guertinlab/kmer_mask_em on toolchain beta-2019-08-13 [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+beta-2019-08-13" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] started frobbing guertinlab/kmer_mask_em [INFO] finished frobbing guertinlab/kmer_mask_em [INFO] frobbed toml for guertinlab/kmer_mask_em written to work/ex/beta-1.38-1/sources/1.37.0/gh/guertinlab/kmer_mask_em/Cargo.toml [INFO] started frobbing guertinlab/kmer_mask_em [INFO] finished frobbing guertinlab/kmer_mask_em [INFO] frobbed toml for guertinlab/kmer_mask_em written to work/ex/beta-1.38-1/sources/beta-2019-08-13/gh/guertinlab/kmer_mask_em/Cargo.toml [INFO] crate guertinlab/kmer_mask_em already has a lockfile, it will not be regenerated [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+1.37.0" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] error: the lock file /mnt/big/crater/work/ex/beta-1.38-1/sources/1.37.0/gh/guertinlab/kmer_mask_em/Cargo.lock needs to be updated but --locked was passed to prevent this [INFO] the lockfile is outdated, regenerating it [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+1.37.0" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update"` [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+beta-2019-08-13" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update"` [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+1.37.0" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+beta-2019-08-13" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] testing guertinlab/kmer_mask_em against 1.37.0 for beta-1.38-1 [INFO] running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/beta-1.38-1/worker-0/1.37.0:/opt/crater/target:rw,Z" "-v" "/mnt/big/crater/work/ex/beta-1.38-1/sources/1.37.0/gh/guertinlab/kmer_mask_em:/opt/crater/workdir:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/opt/crater/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/opt/crater/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/opt/crater/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/crater/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/crater/cargo-home" "-e" "RUSTUP_HOME=/opt/crater/rustup-home" "-w" "/opt/crater/workdir" "-m" "1536M" "--network" "none" "rustops/crates-build-env" "/opt/crater/cargo-home/bin/cargo" "+1.37.0" "build" "--frozen"` [INFO] [stdout] 194cebe00451f179c1bcaffa2bfbf8fbe30e0beec6f30aa4fbae8edc5a3215fc [INFO] running `"docker" "start" "-a" "194cebe00451f179c1bcaffa2bfbf8fbe30e0beec6f30aa4fbae8edc5a3215fc"` [INFO] [stderr] Compiling tabwriter v1.1.0 [INFO] [stderr] Compiling rayon v0.6.0 [INFO] [stderr] Compiling docopt v0.7.0 [INFO] [stderr] Compiling kmermask_em v0.1.0 (/opt/crater/workdir) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 12.17s [INFO] running `"docker" "inspect" "194cebe00451f179c1bcaffa2bfbf8fbe30e0beec6f30aa4fbae8edc5a3215fc"` [INFO] running `"docker" "rm" "-f" "194cebe00451f179c1bcaffa2bfbf8fbe30e0beec6f30aa4fbae8edc5a3215fc"` [INFO] [stdout] 194cebe00451f179c1bcaffa2bfbf8fbe30e0beec6f30aa4fbae8edc5a3215fc [INFO] running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/beta-1.38-1/worker-0/1.37.0:/opt/crater/target:rw,Z" "-v" "/mnt/big/crater/work/ex/beta-1.38-1/sources/1.37.0/gh/guertinlab/kmer_mask_em:/opt/crater/workdir:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/opt/crater/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/opt/crater/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/opt/crater/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/crater/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/crater/cargo-home" "-e" "RUSTUP_HOME=/opt/crater/rustup-home" "-w" "/opt/crater/workdir" "-m" "1536M" "--network" "none" "rustops/crates-build-env" "/opt/crater/cargo-home/bin/cargo" "+1.37.0" "test" "--frozen" "--no-run"` [INFO] [stdout] ffe156780e4792e48f9faed110eb967917919eb83b093ee640a9b8fdec14af48 [INFO] running `"docker" "start" "-a" "ffe156780e4792e48f9faed110eb967917919eb83b093ee640a9b8fdec14af48"` [INFO] [stderr] Compiling kmermask_em v0.1.0 (/opt/crater/workdir) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 1.20s [INFO] running `"docker" "inspect" "ffe156780e4792e48f9faed110eb967917919eb83b093ee640a9b8fdec14af48"` [INFO] running `"docker" "rm" "-f" "ffe156780e4792e48f9faed110eb967917919eb83b093ee640a9b8fdec14af48"` [INFO] [stdout] ffe156780e4792e48f9faed110eb967917919eb83b093ee640a9b8fdec14af48 [INFO] running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/beta-1.38-1/worker-0/1.37.0:/opt/crater/target:rw,Z" "-v" "/mnt/big/crater/work/ex/beta-1.38-1/sources/1.37.0/gh/guertinlab/kmer_mask_em:/opt/crater/workdir:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/opt/crater/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/opt/crater/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/opt/crater/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/crater/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/crater/cargo-home" "-e" "RUSTUP_HOME=/opt/crater/rustup-home" "-w" "/opt/crater/workdir" "-m" "1536M" "--network" "none" "rustops/crates-build-env" "/opt/crater/cargo-home/bin/cargo" "+1.37.0" "test" "--frozen"` [INFO] [stdout] 2b6b0c7ac8af400d1f0ef48d0caa0d047b687c53b3dc009790dc0fcb64dab9f8 [INFO] running `"docker" "start" "-a" "2b6b0c7ac8af400d1f0ef48d0caa0d047b687c53b3dc009790dc0fcb64dab9f8"` [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 0.02s [INFO] [stderr] Running /opt/crater/target/debug/deps/kmermask_em-bbcc0d34bc62e519 [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] running `"docker" "inspect" "2b6b0c7ac8af400d1f0ef48d0caa0d047b687c53b3dc009790dc0fcb64dab9f8"` [INFO] running `"docker" "rm" "-f" "2b6b0c7ac8af400d1f0ef48d0caa0d047b687c53b3dc009790dc0fcb64dab9f8"` [INFO] [stdout] 2b6b0c7ac8af400d1f0ef48d0caa0d047b687c53b3dc009790dc0fcb64dab9f8