[INFO] updating cached repository chfi/rust-qtlreaper [INFO] running `"git" "fetch" "--all"` [INFO] [stdout] Fetching origin [INFO] [stderr] From git://github.com/chfi/rust-qtlreaper [INFO] [stderr] * branch HEAD -> FETCH_HEAD [INFO] running `"git" "clone" "work/cache/sources/gh/chfi/rust-qtlreaper" "work/ex/beta-1.38-1/sources/1.37.0/gh/chfi/rust-qtlreaper"` [INFO] [stderr] Cloning into 'work/ex/beta-1.38-1/sources/1.37.0/gh/chfi/rust-qtlreaper'... [INFO] [stderr] done. [INFO] running `"git" "clone" "work/cache/sources/gh/chfi/rust-qtlreaper" "work/ex/beta-1.38-1/sources/beta-2019-08-13/gh/chfi/rust-qtlreaper"` [INFO] [stderr] Cloning into 'work/ex/beta-1.38-1/sources/beta-2019-08-13/gh/chfi/rust-qtlreaper'... [INFO] [stderr] done. [INFO] running `"git" "rev-parse" "HEAD"` [INFO] [stdout] bf1901645206763d660a2499889f42d369672d79 [INFO] sha for GitHub repo chfi/rust-qtlreaper: bf1901645206763d660a2499889f42d369672d79 [INFO] validating manifest of chfi/rust-qtlreaper on toolchain 1.37.0 [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+1.37.0" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] validating manifest of chfi/rust-qtlreaper on toolchain beta-2019-08-13 [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+beta-2019-08-13" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] started frobbing chfi/rust-qtlreaper [INFO] finished frobbing chfi/rust-qtlreaper [INFO] frobbed toml for chfi/rust-qtlreaper written to work/ex/beta-1.38-1/sources/1.37.0/gh/chfi/rust-qtlreaper/Cargo.toml [INFO] started frobbing chfi/rust-qtlreaper [INFO] finished frobbing chfi/rust-qtlreaper [INFO] frobbed toml for chfi/rust-qtlreaper written to work/ex/beta-1.38-1/sources/beta-2019-08-13/gh/chfi/rust-qtlreaper/Cargo.toml [INFO] crate chfi/rust-qtlreaper already has a lockfile, it will not be regenerated [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+1.37.0" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+beta-2019-08-13" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] testing chfi/rust-qtlreaper against 1.37.0 for beta-1.38-1 [INFO] running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/beta-1.38-1/worker-4/1.37.0:/opt/crater/target:rw,Z" "-v" "/mnt/big/crater/work/ex/beta-1.38-1/sources/1.37.0/gh/chfi/rust-qtlreaper:/opt/crater/workdir:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/opt/crater/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/opt/crater/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/opt/crater/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/crater/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/crater/cargo-home" "-e" "RUSTUP_HOME=/opt/crater/rustup-home" "-w" "/opt/crater/workdir" "-m" "1536M" "--network" "none" "rustops/crates-build-env" "/opt/crater/cargo-home/bin/cargo" "+1.37.0" "build" "--frozen"` [INFO] [stdout] 1d6d8f732f411a916ae5564c13f5f74ef454f156c54acfd43f57327b08ebc862 [INFO] running `"docker" "start" "-a" "1d6d8f732f411a916ae5564c13f5f74ef454f156c54acfd43f57327b08ebc862"` [INFO] [stderr] Compiling clap v2.33.0 [INFO] [stderr] Compiling structopt-derive v0.2.15 [INFO] [stderr] Compiling rayon-core v1.4.1 [INFO] [stderr] Compiling rayon v1.0.3 [INFO] [stderr] Compiling structopt v0.2.15 [INFO] [stderr] Compiling qtlreaper v0.1.2 (/opt/crater/workdir) [INFO] [stderr] warning: unused variable: `n` [INFO] [stderr] --> src/regression.rs:149:9 [INFO] [stderr] | [INFO] [stderr] 149 | let n = traits.len(); [INFO] [stderr] | ^ help: consider prefixing with an underscore: `_n` [INFO] [stderr] | [INFO] [stderr] = note: #[warn(unused_variables)] on by default [INFO] [stderr] [INFO] [stderr] warning: unused variable: `i` [INFO] [stderr] --> src/regression.rs:164:9 [INFO] [stderr] | [INFO] [stderr] 164 | for i in 0..n_test { [INFO] [stderr] | ^ help: consider prefixing with an underscore: `_i` [INFO] [stderr] [INFO] [stderr] warning: constant item is never used: `PERMUTATION_TESTSIZE` [INFO] [stderr] --> src/regression.rs:5:1 [INFO] [stderr] | [INFO] [stderr] 5 | const PERMUTATION_TESTSIZE: usize = 1000; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: #[warn(dead_code)] on by default [INFO] [stderr] [INFO] [stderr] warning: function is never used: `regression_2n_variance` [INFO] [stderr] --> src/regression.rs:251:1 [INFO] [stderr] | [INFO] [stderr] 251 | / fn regression_2n_variance( [INFO] [stderr] 252 | | traits: &[f64], [INFO] [stderr] 253 | | genotypes: &[f64], [INFO] [stderr] 254 | | variance: &[f64], [INFO] [stderr] ... | [INFO] [stderr] 298 | | } [INFO] [stderr] 299 | | } [INFO] [stderr] | |_^ [INFO] [stderr] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 30.78s [INFO] running `"docker" "inspect" "1d6d8f732f411a916ae5564c13f5f74ef454f156c54acfd43f57327b08ebc862"` [INFO] running `"docker" "rm" "-f" "1d6d8f732f411a916ae5564c13f5f74ef454f156c54acfd43f57327b08ebc862"` [INFO] [stdout] 1d6d8f732f411a916ae5564c13f5f74ef454f156c54acfd43f57327b08ebc862 [INFO] running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/beta-1.38-1/worker-4/1.37.0:/opt/crater/target:rw,Z" "-v" "/mnt/big/crater/work/ex/beta-1.38-1/sources/1.37.0/gh/chfi/rust-qtlreaper:/opt/crater/workdir:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/opt/crater/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/opt/crater/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/opt/crater/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/crater/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/crater/cargo-home" "-e" "RUSTUP_HOME=/opt/crater/rustup-home" "-w" "/opt/crater/workdir" "-m" "1536M" "--network" "none" "rustops/crates-build-env" "/opt/crater/cargo-home/bin/cargo" "+1.37.0" "test" "--frozen" "--no-run"` [INFO] [stdout] f66e83d86d31d54b5f30d093d1453d9393469608f37488a3ee2d329cd641b1bd [INFO] running `"docker" "start" "-a" "f66e83d86d31d54b5f30d093d1453d9393469608f37488a3ee2d329cd641b1bd"` [INFO] [stderr] Compiling qtlreaper v0.1.2 (/opt/crater/workdir) [INFO] [stderr] warning: unused variable: `n` [INFO] [stderr] --> src/regression.rs:149:9 [INFO] [stderr] | [INFO] [stderr] 149 | let n = traits.len(); [INFO] [stderr] | ^ help: consider prefixing with an underscore: `_n` [INFO] [stderr] | [INFO] [stderr] = note: #[warn(unused_variables)] on by default [INFO] [stderr] [INFO] [stderr] warning: unused variable: `i` [INFO] [stderr] --> src/regression.rs:164:9 [INFO] [stderr] | [INFO] [stderr] 164 | for i in 0..n_test { [INFO] [stderr] | ^ help: consider prefixing with an underscore: `_i` [INFO] [stderr] [INFO] [stderr] warning: constant item is never used: `PERMUTATION_TESTSIZE` [INFO] [stderr] --> src/regression.rs:5:1 [INFO] [stderr] | [INFO] [stderr] 5 | const PERMUTATION_TESTSIZE: usize = 1000; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: #[warn(dead_code)] on by default [INFO] [stderr] [INFO] [stderr] warning: function is never used: `regression_2n_variance` [INFO] [stderr] --> src/regression.rs:251:1 [INFO] [stderr] | [INFO] [stderr] 251 | / fn regression_2n_variance( [INFO] [stderr] 252 | | traits: &[f64], [INFO] [stderr] 253 | | genotypes: &[f64], [INFO] [stderr] 254 | | variance: &[f64], [INFO] [stderr] ... | [INFO] [stderr] 298 | | } [INFO] [stderr] 299 | | } [INFO] [stderr] | |_^ [INFO] [stderr] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 2.90s [INFO] running `"docker" "inspect" "f66e83d86d31d54b5f30d093d1453d9393469608f37488a3ee2d329cd641b1bd"` [INFO] running `"docker" "rm" "-f" "f66e83d86d31d54b5f30d093d1453d9393469608f37488a3ee2d329cd641b1bd"` [INFO] [stdout] f66e83d86d31d54b5f30d093d1453d9393469608f37488a3ee2d329cd641b1bd [INFO] running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/beta-1.38-1/worker-4/1.37.0:/opt/crater/target:rw,Z" "-v" "/mnt/big/crater/work/ex/beta-1.38-1/sources/1.37.0/gh/chfi/rust-qtlreaper:/opt/crater/workdir:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/opt/crater/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/opt/crater/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/opt/crater/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/crater/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/crater/cargo-home" "-e" "RUSTUP_HOME=/opt/crater/rustup-home" "-w" "/opt/crater/workdir" "-m" "1536M" "--network" "none" "rustops/crates-build-env" "/opt/crater/cargo-home/bin/cargo" "+1.37.0" "test" "--frozen"` [INFO] [stdout] 9f6869f51e10ae9bc0db8351a8a4175bc98d66a71d6bfc60b7a25cc7ed24d531 [INFO] running `"docker" "start" "-a" "9f6869f51e10ae9bc0db8351a8a4175bc98d66a71d6bfc60b7a25cc7ed24d531"` [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 0.08s [INFO] [stderr] Running /opt/crater/target/debug/deps/qtlreaper-8910719cf97e70b9 [INFO] [stdout] [INFO] [stdout] running 3 tests [INFO] [stdout] test geneobject::tests::it_can_parse_header ... ok [INFO] [stdout] test geneobject::tests::it_can_parse_metadata ... ok [INFO] [stdout] test geneobject::tests::it_can_estimate_unknown_genotypes ... FAILED [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] [INFO] [stdout] ---- geneobject::tests::it_can_estimate_unknown_genotypes stdout ---- [INFO] [stdout] thread 'geneobject::tests::it_can_estimate_unknown_genotypes' panicked at 'assertion failed: `(left == right)` [INFO] [stdout] left: `[Locus { dominance: None, genotype: [(Mat, -1.0), (Mat, -1.0), (Pat, 1.0)], marker: Marker { name: "Mk1", centi_morgan: 10.0, mega_basepair: None, chromosome: "1" } }, Locus { dominance: None, genotype: [(Unk, -0.18523506128077272), (Pat, 1.0), (Unk, 0.9616255554798838)], marker: Marker { name: "Mk2", centi_morgan: 30.3, mega_basepair: None, chromosome: "1" } }, Locus { dominance: None, genotype: [(Unk, 0.18906668494617707), (Unk, 0.3421367343627406), (Pat, 1.0)], marker: Marker { name: "Mk3", centi_morgan: 40.1, mega_basepair: None, chromosome: "1" } }, Locus { dominance: None, genotype: [(Unk, 0.5826065314914579), (Unk, -0.32233300305265566), (Unk, 0.3223330030526552)], marker: Marker { name: "Mk4", centi_morgan: 50.2, mega_basepair: None, chromosome: "1" } }, Locus { dominance: None, genotype: [(Pat, 1.0), (Mat, -1.0), (Unk, -0.34213673436274084)], marker: Marker { name: "Mk5", centi_morgan: 60.3, mega_basepair: None, chromosome: "1" } }, Locus { dominance: None, genotype: [(Pat, 1.0), (Mat, -1.0), (Mat, -1.0)], marker: Marker { name: "Mk6", centi_morgan: 70.1, mega_basepair: None, chromosome: "1" } }]`, [INFO] [stdout] right: `[Locus { dominance: None, genotype: [(Mat, -1.0), (Mat, -1.0), (Pat, 1.0)], marker: Marker { name: "Mk1", centi_morgan: 10.0, mega_basepair: None, chromosome: "1" } }, Locus { dominance: None, genotype: [(Unk, -0.18523506128077272), (Pat, 1.0), (Unk, 0.9616255554798838)], marker: Marker { name: "Mk2", centi_morgan: 30.3, mega_basepair: None, chromosome: "1" } }, Locus { dominance: None, genotype: [(Unk, 0.18906668494617707), (Unk, 0.3421367343627405), (Pat, 1.0)], marker: Marker { name: "Mk3", centi_morgan: 40.1, mega_basepair: None, chromosome: "1" } }, Locus { dominance: None, genotype: [(Unk, 0.5826065314914579), (Unk, -0.3223330030526561), (Unk, 0.3223330030526552)], marker: Marker { name: "Mk4", centi_morgan: 50.2, mega_basepair: None, chromosome: "1" } }, Locus { dominance: None, genotype: [(Pat, 1.0), (Mat, -1.0), (Unk, -0.34213673436274084)], marker: Marker { name: "Mk5", centi_morgan: 60.3, mega_basepair: None, chromosome: "1" } }, Locus { dominance: None, genotype: [(Pat, 1.0), (Mat, -1.0), (Mat, -1.0)], marker: Marker { name: "Mk6", centi_morgan: 70.1, mega_basepair: None, chromosome: "1" } }]`', src/geneobject.rs:895:9 [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x5619433e6abb - backtrace::backtrace::libunwind::trace::hfe5db90796807973 [INFO] [stdout] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.29/src/backtrace/libunwind.rs:88 [INFO] [stdout] 1: 0x5619433e6abb - backtrace::backtrace::trace_unsynchronized::h34b865a835594335 [INFO] [stdout] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.29/src/backtrace/mod.rs:66 [INFO] [stdout] 2: 0x5619433e6abb - std::sys_common::backtrace::_print::h527254ae44989167 [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:47 [INFO] [stdout] 3: 0x5619433e6abb - std::sys_common::backtrace::print::he85dd5ddddf46503 [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:36 [INFO] [stdout] 4: 0x5619433e6abb - std::panicking::default_hook::{{closure}}::h847a2eb38b396f14 [INFO] [stdout] at src/libstd/panicking.rs:200 [INFO] [stdout] 5: 0x5619433e672a - std::panicking::default_hook::h2ca0f9a30a0e206b [INFO] [stdout] at src/libstd/panicking.rs:211 [INFO] [stdout] 6: 0x5619433e7230 - std::panicking::rust_panic_with_hook::hffcefc09751839d1 [INFO] [stdout] at src/libstd/panicking.rs:477 [INFO] [stdout] 7: 0x5619433e6db2 - std::panicking::continue_panic_fmt::hc0f142c930c846fc [INFO] [stdout] at src/libstd/panicking.rs:384 [INFO] [stdout] 8: 0x5619433e6cff - std::panicking::begin_panic_fmt::ha6acf0ffd6d7f80d [INFO] [stdout] at src/libstd/panicking.rs:339 [INFO] [stdout] 9: 0x561943388f60 - qtlreaper::geneobject::tests::it_can_estimate_unknown_genotypes::h2024574495325c2a [INFO] [stdout] at src/geneobject.rs:895 [INFO] [stdout] 10: 0x5619433872ba - qtlreaper::geneobject::tests::it_can_estimate_unknown_genotypes::{{closure}}::hb2f6910614b1b0e1 [INFO] [stdout] at src/geneobject.rs:780 [INFO] [stdout] 11: 0x56194337d04e - core::ops::function::FnOnce::call_once::h6e909515c83c095d [INFO] [stdout] at /rustc/eae3437dfe991621e8afdc82734f4a172d7ddf9b/src/libcore/ops/function.rs:231 [INFO] [stdout] 12: 0x56194339a7df - as core::ops::function::FnOnce>::call_once::h4a13ee3f0d7b4201 [INFO] [stdout] at /rustc/eae3437dfe991621e8afdc82734f4a172d7ddf9b/src/liballoc/boxed.rs:746 [INFO] [stdout] 13: 0x5619433e97aa - __rust_maybe_catch_panic [INFO] [stdout] at src/libpanic_unwind/lib.rs:82 [INFO] [stdout] 14: 0x5619433b4dd8 - std::panicking::try::h5a93466ab2078586 [INFO] [stdout] at /rustc/eae3437dfe991621e8afdc82734f4a172d7ddf9b/src/libstd/panicking.rs:275 [INFO] [stdout] 15: 0x5619433b4dd8 - std::panic::catch_unwind::h752cbeae6ac7bdea [INFO] [stdout] at /rustc/eae3437dfe991621e8afdc82734f4a172d7ddf9b/src/libstd/panic.rs:394 [INFO] [stdout] 16: 0x5619433b4dd8 - test::run_test::run_test_inner::{{closure}}::h206c9c16936edaca [INFO] [stdout] at src/libtest/lib.rs:1466 [INFO] [stdout] 17: 0x56194338fc55 - std::sys_common::backtrace::__rust_begin_short_backtrace::hc7edbac42990d270 [INFO] [stdout] at /rustc/eae3437dfe991621e8afdc82734f4a172d7ddf9b/src/libstd/sys_common/backtrace.rs:77 [INFO] [stdout] 18: 0x561943393d15 - std::thread::Builder::spawn_unchecked::{{closure}}::{{closure}}::he53c58e7adee87af [INFO] [stdout] at /rustc/eae3437dfe991621e8afdc82734f4a172d7ddf9b/src/libstd/thread/mod.rs:470 [INFO] [stdout] 19: 0x561943393d15 - as core::ops::function::FnOnce<()>>::call_once::h1aff7c42b6bb3726 [INFO] [stdout] at /rustc/eae3437dfe991621e8afdc82734f4a172d7ddf9b/src/libstd/panic.rs:315 [INFO] [stdout] 20: 0x561943393d15 - std::panicking::try::do_call::h41f8559f88100f6c [INFO] [stdout] at /rustc/eae3437dfe991621e8afdc82734f4a172d7ddf9b/src/libstd/panicking.rs:296 [INFO] [stdout] 21: 0x5619433e97aa - __rust_maybe_catch_panic [INFO] [stdout] at src/libpanic_unwind/lib.rs:82 [INFO] [stdout] 22: 0x561943394412 - std::panicking::try::hb54ba808181fe352 [INFO] [stdout] at /rustc/eae3437dfe991621e8afdc82734f4a172d7ddf9b/src/libstd/panicking.rs:275 [INFO] [stdout] 23: 0x561943394412 - std::panic::catch_unwind::h555ccf4e835e93f4 [INFO] [stdout] at /rustc/eae3437dfe991621e8afdc82734f4a172d7ddf9b/src/libstd/panic.rs:394 [INFO] [stdout] 24: 0x561943394412 - std::thread::Builder::spawn_unchecked::{{closure}}::hd4dae6e19e80fc1a [INFO] [stdout] at /rustc/eae3437dfe991621e8afdc82734f4a172d7ddf9b/src/libstd/thread/mod.rs:469 [INFO] [stdout] 25: 0x561943394412 - core::ops::function::FnOnce::call_once{{vtable.shim}}::hc35d54c07710e1a1 [INFO] [stdout] at /rustc/eae3437dfe991621e8afdc82734f4a172d7ddf9b/src/libcore/ops/function.rs:231 [INFO] [stdout] 26: 0x5619433dc85f - as core::ops::function::FnOnce>::call_once::h42806b83647d4c79 [INFO] [stdout] at /rustc/eae3437dfe991621e8afdc82734f4a172d7ddf9b/src/liballoc/boxed.rs:746 [INFO] [stdout] 27: 0x5619433e8f00 - as core::ops::function::FnOnce>::call_once::h83c921c8e826dd1d [INFO] [stdout] at /rustc/eae3437dfe991621e8afdc82734f4a172d7ddf9b/src/liballoc/boxed.rs:746 [INFO] [stdout] 28: 0x5619433e8f00 - std::sys_common::thread::start_thread::h2613204ce513782e [INFO] [stdout] at src/libstd/sys_common/thread.rs:13 [INFO] [stdout] 29: 0x5619433e8f00 - std::sys::unix::thread::Thread::new::thread_start::h4570080769500bcd [INFO] [stdout] at src/libstd/sys/unix/thread.rs:79 [INFO] [stdout] 30: 0x7fa7277624a4 - start_thread [INFO] [stdout] 31: 0x7fa72728dd0f - __clone [INFO] [stdout] 32: 0x0 - [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] geneobject::tests::it_can_estimate_unknown_genotypes [INFO] [stdout] [INFO] [stdout] test result: FAILED. 2 passed; 1 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] [stderr] error: test failed, to rerun pass '--lib' [INFO] running `"docker" "inspect" "9f6869f51e10ae9bc0db8351a8a4175bc98d66a71d6bfc60b7a25cc7ed24d531"` [INFO] running `"docker" "rm" "-f" "9f6869f51e10ae9bc0db8351a8a4175bc98d66a71d6bfc60b7a25cc7ed24d531"` [INFO] [stdout] 9f6869f51e10ae9bc0db8351a8a4175bc98d66a71d6bfc60b7a25cc7ed24d531