[INFO] updating cached repository TuBieJun/consensus [INFO] running `"git" "fetch" "--all"` [INFO] [stdout] Fetching origin [INFO] [stderr] From git://github.com/TuBieJun/consensus [INFO] [stderr] * branch HEAD -> FETCH_HEAD [INFO] running `"git" "clone" "work/cache/sources/gh/TuBieJun/consensus" "work/ex/beta-1.38-1/sources/1.37.0/gh/TuBieJun/consensus"` [INFO] [stderr] Cloning into 'work/ex/beta-1.38-1/sources/1.37.0/gh/TuBieJun/consensus'... [INFO] [stderr] done. [INFO] running `"git" "clone" "work/cache/sources/gh/TuBieJun/consensus" "work/ex/beta-1.38-1/sources/beta-2019-08-13/gh/TuBieJun/consensus"` [INFO] [stderr] Cloning into 'work/ex/beta-1.38-1/sources/beta-2019-08-13/gh/TuBieJun/consensus'... [INFO] [stderr] done. [INFO] running `"git" "rev-parse" "HEAD"` [INFO] [stdout] c40ebfab0e62be16d5d1c67214244e4f6e3edaec [INFO] sha for GitHub repo TuBieJun/consensus: c40ebfab0e62be16d5d1c67214244e4f6e3edaec [INFO] validating manifest of TuBieJun/consensus on toolchain 1.37.0 [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+1.37.0" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] validating manifest of TuBieJun/consensus on toolchain beta-2019-08-13 [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+beta-2019-08-13" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] started frobbing TuBieJun/consensus [INFO] finished frobbing TuBieJun/consensus [INFO] frobbed toml for TuBieJun/consensus written to work/ex/beta-1.38-1/sources/1.37.0/gh/TuBieJun/consensus/Cargo.toml [INFO] started frobbing TuBieJun/consensus [INFO] finished frobbing TuBieJun/consensus [INFO] frobbed toml for TuBieJun/consensus written to work/ex/beta-1.38-1/sources/beta-2019-08-13/gh/TuBieJun/consensus/Cargo.toml [INFO] crate TuBieJun/consensus already has a lockfile, it will not be regenerated [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+1.37.0" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+beta-2019-08-13" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] testing TuBieJun/consensus against 1.37.0 for beta-1.38-1 [INFO] running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/beta-1.38-1/worker-0/1.37.0:/opt/crater/target:rw,Z" "-v" "/mnt/big/crater/work/ex/beta-1.38-1/sources/1.37.0/gh/TuBieJun/consensus:/opt/crater/workdir:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/opt/crater/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/opt/crater/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/opt/crater/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/crater/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/crater/cargo-home" "-e" "RUSTUP_HOME=/opt/crater/rustup-home" "-w" "/opt/crater/workdir" "-m" "1536M" "--network" "none" "rustops/crates-build-env" "/opt/crater/cargo-home/bin/cargo" "+1.37.0" "build" "--frozen"` [INFO] [stdout] 9380d3f7ac4d99d75995ff5675d7352e062bedb0a6558d02c0245c822543b927 [INFO] running `"docker" "start" "-a" "9380d3f7ac4d99d75995ff5675d7352e062bedb0a6558d02c0245c822543b927"` [INFO] [stderr] Compiling quick-error v1.2.1 [INFO] [stderr] Compiling ieee754 v0.2.2 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling atty v0.2.6 [INFO] [stderr] Compiling itertools v0.6.5 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling fs-utils v1.0.0 [INFO] [stderr] Compiling clap v2.29.0 [INFO] [stderr] Compiling rust-htslib v0.15.0 [INFO] [stderr] Compiling consensus v0.1.0 (/opt/crater/workdir) [INFO] [stderr] warning: unused import: `std::env` [INFO] [stderr] --> src/main.rs:12:5 [INFO] [stderr] | [INFO] [stderr] 12 | use std::env; [INFO] [stderr] | ^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: #[warn(unused_imports)] on by default [INFO] [stderr] [INFO] [stderr] warning: unused import: `rust_htslib::prelude::*` [INFO] [stderr] --> src/main.rs:16:5 [INFO] [stderr] | [INFO] [stderr] 16 | use rust_htslib::prelude::*; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `std::io` [INFO] [stderr] --> src/main.rs:21:5 [INFO] [stderr] | [INFO] [stderr] 21 | use std::io; [INFO] [stderr] | ^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `PathBuf` [INFO] [stderr] --> src/main.rs:25:23 [INFO] [stderr] | [INFO] [stderr] 25 | use std::path::{Path, PathBuf}; [INFO] [stderr] | ^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `SubCommand` [INFO] [stderr] --> src/main.rs:26:22 [INFO] [stderr] | [INFO] [stderr] 26 | use clap::{Arg, App, SubCommand}; [INFO] [stderr] | ^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unnecessary parentheses around `if` condition [INFO] [stderr] --> src/main.rs:218:20 [INFO] [stderr] | [INFO] [stderr] 218 | if (num_position[&(i as usize)] == num_position[&(0 as usize)]) { [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: remove these parentheses [INFO] [stderr] | [INFO] [stderr] = note: #[warn(unused_parens)] on by default [INFO] [stderr] [INFO] [stderr] warning: unnecessary parentheses around `if` condition [INFO] [stderr] --> src/main.rs:239:16 [INFO] [stderr] | [INFO] [stderr] 239 | if (baseEach_percent_record.len() > 0) { [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: remove these parentheses [INFO] [stderr] [INFO] [stderr] warning: unused import: `std::io::prelude` [INFO] [stderr] --> src/main.rs:22:5 [INFO] [stderr] | [INFO] [stderr] 22 | use std::io::prelude::*; [INFO] [stderr] | ^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused variable: `consensus_base` [INFO] [stderr] --> src/main.rs:139:9 [INFO] [stderr] | [INFO] [stderr] 139 | let consensus_base:Vec = Vec::new(); [INFO] [stderr] | ^^^^^^^^^^^^^^ help: consider prefixing with an underscore: `_consensus_base` [INFO] [stderr] | [INFO] [stderr] = note: #[warn(unused_variables)] on by default [INFO] [stderr] [INFO] [stderr] warning: unused variable: `consensus_source_reads` [INFO] [stderr] --> src/main.rs:144:13 [INFO] [stderr] | [INFO] [stderr] 144 | let mut consensus_source_reads = String::new(); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^ help: consider prefixing with an underscore: `_consensus_source_reads` [INFO] [stderr] [INFO] [stderr] warning: unused variable: `chrom` [INFO] [stderr] --> src/main.rs:283:121 [INFO] [stderr] | [INFO] [stderr] 283 | fn block_consensus(pd:& mut HashMap, Vec, Vec, CigarStringView, bool)>>>, chrom: i32, use_check:bool, min_t_s: &u32, min_t_p: &f32, o_r1: & mut File, o_r2: & mut File, need_trim:bool) { [INFO] [stderr] | ^^^^^ help: consider prefixing with an underscore: `_chrom` [INFO] [stderr] [INFO] [stderr] warning: value assigned to `new_seq_b` is never read [INFO] [stderr] --> src/main.rs:370:21 [INFO] [stderr] | [INFO] [stderr] 370 | let mut new_seq_b:Vec = Vec::new(); [INFO] [stderr] | ^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: #[warn(unused_assignments)] on by default [INFO] [stderr] = help: maybe it is overwritten before being read? [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:74:9 [INFO] [stderr] | [INFO] [stderr] 74 | let mut pair; [INFO] [stderr] | ----^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] | [INFO] [stderr] = note: #[warn(unused_mut)] on by default [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:75:9 [INFO] [stderr] | [INFO] [stderr] 75 | let mut strand; [INFO] [stderr] | ----^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:76:9 [INFO] [stderr] | [INFO] [stderr] 76 | let mut aln_pos; [INFO] [stderr] | ----^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:144:9 [INFO] [stderr] | [INFO] [stderr] 144 | let mut consensus_source_reads = String::new(); [INFO] [stderr] | ----^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:151:9 [INFO] [stderr] | [INFO] [stderr] 151 | let mut top_cigar:&CigarStringView; [INFO] [stderr] | ----^^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:213:17 [INFO] [stderr] | [INFO] [stderr] 213 | let mut str_num:String; [INFO] [stderr] | ----^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:232:17 [INFO] [stderr] | [INFO] [stderr] 232 | let mut str_percent:String; [INFO] [stderr] | ----^^^^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:338:9 [INFO] [stderr] | [INFO] [stderr] 338 | let mut need_trim:bool; [INFO] [stderr] | ----^^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:355:9 [INFO] [stderr] | [INFO] [stderr] 355 | let mut chrom = 0; [INFO] [stderr] | ----^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:374:17 [INFO] [stderr] | [INFO] [stderr] 374 | let mut cigar_view = record.cigar(); [INFO] [stderr] | ----^^^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: function `bamLineParse` should have a snake case name [INFO] [stderr] --> src/main.rs:68:4 [INFO] [stderr] | [INFO] [stderr] 68 | fn bamLineParse(record:&Record) -> (String, String, String, i32, i32){ [INFO] [stderr] | ^^^^^^^^^^^^ help: convert the identifier to snake case: `bam_line_parse` [INFO] [stderr] | [INFO] [stderr] = note: #[warn(non_snake_case)] on by default [INFO] [stderr] [INFO] [stderr] warning: variable `baseEach_num_record` should have a snake case name [INFO] [stderr] --> src/main.rs:147:13 [INFO] [stderr] | [INFO] [stderr] 147 | let mut baseEach_num_record = String::new(); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `base_each_num_record` [INFO] [stderr] [INFO] [stderr] warning: variable `baseEach_percent_record` should have a snake case name [INFO] [stderr] --> src/main.rs:148:13 [INFO] [stderr] | [INFO] [stderr] 148 | let mut baseEach_percent_record = String::new(); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `base_each_percent_record` [INFO] [stderr] [INFO] [stderr] warning: unused `std::result::Result` that must be used [INFO] [stderr] --> src/main.rs:267:9 [INFO] [stderr] | [INFO] [stderr] 267 | o_buff.write(&member_record.2); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: #[warn(unused_must_use)] on by default [INFO] [stderr] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stderr] [INFO] [stderr] warning: unused `std::result::Result` that must be used [INFO] [stderr] --> src/main.rs:269:9 [INFO] [stderr] | [INFO] [stderr] 269 | o_buff.write(&member_record.0); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stderr] [INFO] [stderr] warning: unused `std::result::Result` that must be used [INFO] [stderr] --> src/main.rs:272:9 [INFO] [stderr] | [INFO] [stderr] 272 | o_buff.write(&real_qual_temp); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stderr] [INFO] [stderr] warning: unused `std::result::Result` that must be used [INFO] [stderr] --> src/main.rs:274:5 [INFO] [stderr] | [INFO] [stderr] 274 | o_buff.write(b"\n"); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stderr] [INFO] [stderr] warning: unused `std::result::Result` that must be used [INFO] [stderr] --> src/main.rs:277:5 [INFO] [stderr] | [INFO] [stderr] 277 | o_buff.write(b"\n"); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stderr] [INFO] [stderr] warning: unused `std::result::Result` that must be used [INFO] [stderr] --> src/main.rs:280:5 [INFO] [stderr] | [INFO] [stderr] 280 | o_buff.write(b"\n"); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stderr] [INFO] [stderr] warning: variable `key_dupGroup` should have a snake case name [INFO] [stderr] --> src/main.rs:286:10 [INFO] [stderr] | [INFO] [stderr] 286 | for (key_dupGroup, pair_dup) in pd.iter() { [INFO] [stderr] | ^^^^^^^^^^^^ help: convert the identifier to snake case: `key_dup_group` [INFO] [stderr] [INFO] [stderr] warning: variable `position_dupGroup` should have a snake case name [INFO] [stderr] --> src/main.rs:357:13 [INFO] [stderr] | [INFO] [stderr] 357 | let mut position_dupGroup: HashMap, Vec, Vec, CigarStringView, bool)>>> = HashMap::new(); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `position_dup_group` [INFO] [stderr] [INFO] [stderr] warning: variable `key_dupGroup` should have a snake case name [INFO] [stderr] --> src/main.rs:387:17 [INFO] [stderr] | [INFO] [stderr] 387 | let key_dupGroup = format!("{}_{}_{}_{}{}", index, chrom, aln_pos, strand, insert_size); [INFO] [stderr] | ^^^^^^^^^^^^ help: convert the identifier to snake case: `key_dup_group` [INFO] [stderr] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 50.52s [INFO] running `"docker" "inspect" "9380d3f7ac4d99d75995ff5675d7352e062bedb0a6558d02c0245c822543b927"` [INFO] running `"docker" "rm" "-f" "9380d3f7ac4d99d75995ff5675d7352e062bedb0a6558d02c0245c822543b927"` [INFO] [stdout] 9380d3f7ac4d99d75995ff5675d7352e062bedb0a6558d02c0245c822543b927 [INFO] running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/beta-1.38-1/worker-0/1.37.0:/opt/crater/target:rw,Z" "-v" "/mnt/big/crater/work/ex/beta-1.38-1/sources/1.37.0/gh/TuBieJun/consensus:/opt/crater/workdir:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/opt/crater/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/opt/crater/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/opt/crater/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/crater/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/crater/cargo-home" "-e" "RUSTUP_HOME=/opt/crater/rustup-home" "-w" "/opt/crater/workdir" "-m" "1536M" "--network" "none" "rustops/crates-build-env" "/opt/crater/cargo-home/bin/cargo" "+1.37.0" "test" "--frozen" "--no-run"` [INFO] [stdout] da97d482e0dadcc0643f168579b9e69dfdbfc85b4833ee1eb70ff01d555e2321 [INFO] running `"docker" "start" "-a" "da97d482e0dadcc0643f168579b9e69dfdbfc85b4833ee1eb70ff01d555e2321"` [INFO] [stderr] Compiling consensus v0.1.0 (/opt/crater/workdir) [INFO] [stderr] warning: unused import: `std::env` [INFO] [stderr] --> src/main.rs:12:5 [INFO] [stderr] | [INFO] [stderr] 12 | use std::env; [INFO] [stderr] | ^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: #[warn(unused_imports)] on by default [INFO] [stderr] [INFO] [stderr] warning: unused import: `rust_htslib::prelude::*` [INFO] [stderr] --> src/main.rs:16:5 [INFO] [stderr] | [INFO] [stderr] 16 | use rust_htslib::prelude::*; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `std::io` [INFO] [stderr] --> src/main.rs:21:5 [INFO] [stderr] | [INFO] [stderr] 21 | use std::io; [INFO] [stderr] | ^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `PathBuf` [INFO] [stderr] --> src/main.rs:25:23 [INFO] [stderr] | [INFO] [stderr] 25 | use std::path::{Path, PathBuf}; [INFO] [stderr] | ^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `SubCommand` [INFO] [stderr] --> src/main.rs:26:22 [INFO] [stderr] | [INFO] [stderr] 26 | use clap::{Arg, App, SubCommand}; [INFO] [stderr] | ^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unnecessary parentheses around `if` condition [INFO] [stderr] --> src/main.rs:218:20 [INFO] [stderr] | [INFO] [stderr] 218 | if (num_position[&(i as usize)] == num_position[&(0 as usize)]) { [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: remove these parentheses [INFO] [stderr] | [INFO] [stderr] = note: #[warn(unused_parens)] on by default [INFO] [stderr] [INFO] [stderr] warning: unnecessary parentheses around `if` condition [INFO] [stderr] --> src/main.rs:239:16 [INFO] [stderr] | [INFO] [stderr] 239 | if (baseEach_percent_record.len() > 0) { [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: remove these parentheses [INFO] [stderr] [INFO] [stderr] warning: unused import: `std::io::prelude` [INFO] [stderr] --> src/main.rs:22:5 [INFO] [stderr] | [INFO] [stderr] 22 | use std::io::prelude::*; [INFO] [stderr] | ^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused variable: `consensus_base` [INFO] [stderr] --> src/main.rs:139:9 [INFO] [stderr] | [INFO] [stderr] 139 | let consensus_base:Vec = Vec::new(); [INFO] [stderr] | ^^^^^^^^^^^^^^ help: consider prefixing with an underscore: `_consensus_base` [INFO] [stderr] | [INFO] [stderr] = note: #[warn(unused_variables)] on by default [INFO] [stderr] [INFO] [stderr] warning: unused variable: `consensus_source_reads` [INFO] [stderr] --> src/main.rs:144:13 [INFO] [stderr] | [INFO] [stderr] 144 | let mut consensus_source_reads = String::new(); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^ help: consider prefixing with an underscore: `_consensus_source_reads` [INFO] [stderr] [INFO] [stderr] warning: unused variable: `chrom` [INFO] [stderr] --> src/main.rs:283:121 [INFO] [stderr] | [INFO] [stderr] 283 | fn block_consensus(pd:& mut HashMap, Vec, Vec, CigarStringView, bool)>>>, chrom: i32, use_check:bool, min_t_s: &u32, min_t_p: &f32, o_r1: & mut File, o_r2: & mut File, need_trim:bool) { [INFO] [stderr] | ^^^^^ help: consider prefixing with an underscore: `_chrom` [INFO] [stderr] [INFO] [stderr] warning: value assigned to `new_seq_b` is never read [INFO] [stderr] --> src/main.rs:370:21 [INFO] [stderr] | [INFO] [stderr] 370 | let mut new_seq_b:Vec = Vec::new(); [INFO] [stderr] | ^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: #[warn(unused_assignments)] on by default [INFO] [stderr] = help: maybe it is overwritten before being read? [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:74:9 [INFO] [stderr] | [INFO] [stderr] 74 | let mut pair; [INFO] [stderr] | ----^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] | [INFO] [stderr] = note: #[warn(unused_mut)] on by default [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:75:9 [INFO] [stderr] | [INFO] [stderr] 75 | let mut strand; [INFO] [stderr] | ----^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:76:9 [INFO] [stderr] | [INFO] [stderr] 76 | let mut aln_pos; [INFO] [stderr] | ----^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:144:9 [INFO] [stderr] | [INFO] [stderr] 144 | let mut consensus_source_reads = String::new(); [INFO] [stderr] | ----^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:151:9 [INFO] [stderr] | [INFO] [stderr] 151 | let mut top_cigar:&CigarStringView; [INFO] [stderr] | ----^^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:213:17 [INFO] [stderr] | [INFO] [stderr] 213 | let mut str_num:String; [INFO] [stderr] | ----^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:232:17 [INFO] [stderr] | [INFO] [stderr] 232 | let mut str_percent:String; [INFO] [stderr] | ----^^^^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:338:9 [INFO] [stderr] | [INFO] [stderr] 338 | let mut need_trim:bool; [INFO] [stderr] | ----^^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:355:9 [INFO] [stderr] | [INFO] [stderr] 355 | let mut chrom = 0; [INFO] [stderr] | ----^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:374:17 [INFO] [stderr] | [INFO] [stderr] 374 | let mut cigar_view = record.cigar(); [INFO] [stderr] | ----^^^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: function `bamLineParse` should have a snake case name [INFO] [stderr] --> src/main.rs:68:4 [INFO] [stderr] | [INFO] [stderr] 68 | fn bamLineParse(record:&Record) -> (String, String, String, i32, i32){ [INFO] [stderr] | ^^^^^^^^^^^^ help: convert the identifier to snake case: `bam_line_parse` [INFO] [stderr] | [INFO] [stderr] = note: #[warn(non_snake_case)] on by default [INFO] [stderr] [INFO] [stderr] warning: variable `baseEach_num_record` should have a snake case name [INFO] [stderr] --> src/main.rs:147:13 [INFO] [stderr] | [INFO] [stderr] 147 | let mut baseEach_num_record = String::new(); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `base_each_num_record` [INFO] [stderr] [INFO] [stderr] warning: variable `baseEach_percent_record` should have a snake case name [INFO] [stderr] --> src/main.rs:148:13 [INFO] [stderr] | [INFO] [stderr] 148 | let mut baseEach_percent_record = String::new(); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `base_each_percent_record` [INFO] [stderr] [INFO] [stderr] warning: unused `std::result::Result` that must be used [INFO] [stderr] --> src/main.rs:267:9 [INFO] [stderr] | [INFO] [stderr] 267 | o_buff.write(&member_record.2); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: #[warn(unused_must_use)] on by default [INFO] [stderr] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stderr] [INFO] [stderr] warning: unused `std::result::Result` that must be used [INFO] [stderr] --> src/main.rs:269:9 [INFO] [stderr] | [INFO] [stderr] 269 | o_buff.write(&member_record.0); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stderr] [INFO] [stderr] warning: unused `std::result::Result` that must be used [INFO] [stderr] --> src/main.rs:272:9 [INFO] [stderr] | [INFO] [stderr] 272 | o_buff.write(&real_qual_temp); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stderr] [INFO] [stderr] warning: unused `std::result::Result` that must be used [INFO] [stderr] --> src/main.rs:274:5 [INFO] [stderr] | [INFO] [stderr] 274 | o_buff.write(b"\n"); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stderr] [INFO] [stderr] warning: unused `std::result::Result` that must be used [INFO] [stderr] --> src/main.rs:277:5 [INFO] [stderr] | [INFO] [stderr] 277 | o_buff.write(b"\n"); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stderr] [INFO] [stderr] warning: unused `std::result::Result` that must be used [INFO] [stderr] --> src/main.rs:280:5 [INFO] [stderr] | [INFO] [stderr] 280 | o_buff.write(b"\n"); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stderr] [INFO] [stderr] warning: variable `key_dupGroup` should have a snake case name [INFO] [stderr] --> src/main.rs:286:10 [INFO] [stderr] | [INFO] [stderr] 286 | for (key_dupGroup, pair_dup) in pd.iter() { [INFO] [stderr] | ^^^^^^^^^^^^ help: convert the identifier to snake case: `key_dup_group` [INFO] [stderr] [INFO] [stderr] warning: variable `position_dupGroup` should have a snake case name [INFO] [stderr] --> src/main.rs:357:13 [INFO] [stderr] | [INFO] [stderr] 357 | let mut position_dupGroup: HashMap, Vec, Vec, CigarStringView, bool)>>> = HashMap::new(); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `position_dup_group` [INFO] [stderr] [INFO] [stderr] warning: variable `key_dupGroup` should have a snake case name [INFO] [stderr] --> src/main.rs:387:17 [INFO] [stderr] | [INFO] [stderr] 387 | let key_dupGroup = format!("{}_{}_{}_{}{}", index, chrom, aln_pos, strand, insert_size); [INFO] [stderr] | ^^^^^^^^^^^^ help: convert the identifier to snake case: `key_dup_group` [INFO] [stderr] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 1.17s [INFO] running `"docker" "inspect" "da97d482e0dadcc0643f168579b9e69dfdbfc85b4833ee1eb70ff01d555e2321"` [INFO] running `"docker" "rm" "-f" "da97d482e0dadcc0643f168579b9e69dfdbfc85b4833ee1eb70ff01d555e2321"` [INFO] [stdout] da97d482e0dadcc0643f168579b9e69dfdbfc85b4833ee1eb70ff01d555e2321 [INFO] running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/beta-1.38-1/worker-0/1.37.0:/opt/crater/target:rw,Z" "-v" "/mnt/big/crater/work/ex/beta-1.38-1/sources/1.37.0/gh/TuBieJun/consensus:/opt/crater/workdir:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/opt/crater/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/opt/crater/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/opt/crater/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/crater/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/crater/cargo-home" "-e" "RUSTUP_HOME=/opt/crater/rustup-home" "-w" "/opt/crater/workdir" "-m" "1536M" "--network" "none" "rustops/crates-build-env" "/opt/crater/cargo-home/bin/cargo" "+1.37.0" "test" "--frozen"` [INFO] [stdout] 6991255b314fdd436efa9aaaf378d6008c16bea6be60b951ebdabcda2d1263e8 [INFO] running `"docker" "start" "-a" "6991255b314fdd436efa9aaaf378d6008c16bea6be60b951ebdabcda2d1263e8"` [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 0.13s [INFO] [stderr] Running /opt/crater/target/debug/deps/consensus-f7c2515146dbf455 [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] running `"docker" "inspect" "6991255b314fdd436efa9aaaf378d6008c16bea6be60b951ebdabcda2d1263e8"` [INFO] running `"docker" "rm" "-f" "6991255b314fdd436efa9aaaf378d6008c16bea6be60b951ebdabcda2d1263e8"` [INFO] [stdout] 6991255b314fdd436efa9aaaf378d6008c16bea6be60b951ebdabcda2d1263e8