[INFO] updating cached repository 10XGenomics/rust-pseudoaligner
[INFO] running `"git" "fetch" "--all"`
[INFO] [stdout] Fetching origin
[INFO] [stderr] From git://github.com/10XGenomics/rust-pseudoaligner
[INFO] [stderr]  * branch            HEAD       -> FETCH_HEAD
[INFO] running `"git" "clone" "work/cache/sources/gh/10XGenomics/rust-pseudoaligner" "work/ex/beta-1.38-1/sources/1.37.0/gh/10XGenomics/rust-pseudoaligner"`
[INFO] [stderr] Cloning into 'work/ex/beta-1.38-1/sources/1.37.0/gh/10XGenomics/rust-pseudoaligner'...
[INFO] [stderr] done.
[INFO] running `"git" "clone" "work/cache/sources/gh/10XGenomics/rust-pseudoaligner" "work/ex/beta-1.38-1/sources/beta-2019-08-13/gh/10XGenomics/rust-pseudoaligner"`
[INFO] [stderr] Cloning into 'work/ex/beta-1.38-1/sources/beta-2019-08-13/gh/10XGenomics/rust-pseudoaligner'...
[INFO] [stderr] done.
[INFO] running `"git" "rev-parse" "HEAD"`
[INFO] [stdout] 1229501709adb389886fde3a90609b12bd3b5055
[INFO] sha for GitHub repo 10XGenomics/rust-pseudoaligner: 1229501709adb389886fde3a90609b12bd3b5055
[INFO] validating manifest of 10XGenomics/rust-pseudoaligner on toolchain 1.37.0
[INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+1.37.0" "read-manifest" "--manifest-path" "Cargo.toml"`
[INFO] validating manifest of 10XGenomics/rust-pseudoaligner on toolchain beta-2019-08-13
[INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+beta-2019-08-13" "read-manifest" "--manifest-path" "Cargo.toml"`
[INFO] started frobbing 10XGenomics/rust-pseudoaligner
[INFO] finished frobbing 10XGenomics/rust-pseudoaligner
[INFO] frobbed toml for 10XGenomics/rust-pseudoaligner written to work/ex/beta-1.38-1/sources/1.37.0/gh/10XGenomics/rust-pseudoaligner/Cargo.toml
[INFO] started frobbing 10XGenomics/rust-pseudoaligner
[INFO] finished frobbing 10XGenomics/rust-pseudoaligner
[INFO] frobbed toml for 10XGenomics/rust-pseudoaligner written to work/ex/beta-1.38-1/sources/beta-2019-08-13/gh/10XGenomics/rust-pseudoaligner/Cargo.toml
[INFO] crate 10XGenomics/rust-pseudoaligner already has a lockfile, it will not be regenerated
[INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+1.37.0" "fetch" "--locked" "--manifest-path" "Cargo.toml"`
[INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+beta-2019-08-13" "fetch" "--locked" "--manifest-path" "Cargo.toml"`
[INFO] testing 10XGenomics/rust-pseudoaligner against 1.37.0 for beta-1.38-1
[INFO] running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/beta-1.38-1/worker-3/1.37.0:/opt/crater/target:rw,Z" "-v" "/mnt/big/crater/work/ex/beta-1.38-1/sources/1.37.0/gh/10XGenomics/rust-pseudoaligner:/opt/crater/workdir:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/opt/crater/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/opt/crater/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/opt/crater/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/crater/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/crater/cargo-home" "-e" "RUSTUP_HOME=/opt/crater/rustup-home" "-w" "/opt/crater/workdir" "-m" "1536M" "--network" "none" "rustops/crates-build-env" "/opt/crater/cargo-home/bin/cargo" "+1.37.0" "build" "--frozen"`
[INFO] [stdout] 7812110c12ad91eb1a674475e632fb1d6cfe3024c7b625685bfe11ed05852032
[INFO] running `"docker" "start" "-a" "7812110c12ad91eb1a674475e632fb1d6cfe3024c7b625685bfe11ed05852032"`
[INFO] [stderr]    Compiling heapsize v0.4.2
[INFO] [stderr]    Compiling bv v0.7.4
[INFO] [stderr]    Compiling ndarray v0.9.1
[INFO] [stderr]    Compiling spin v0.4.9
[INFO] [stderr]    Compiling byteorder v1.2.6
[INFO] [stderr]    Compiling pdqsort v1.0.3
[INFO] [stderr]    Compiling bytecount v0.3.2
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling log v0.4.5
[INFO] [stderr]    Compiling miniz-sys v0.1.10
[INFO] [stderr]    Compiling itertools v0.6.5
[INFO] [stderr]    Compiling csv-core v0.1.4
[INFO] [stderr]    Compiling concurrent-hashmap v0.2.2
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling itertools-num v0.1.2
[INFO] [stderr]    Compiling statrs v0.9.0
[INFO] [stderr]    Compiling syn v0.14.9
[INFO] [stderr]    Compiling num-bigint v0.2.0
[INFO] [stderr]    Compiling num-iter v0.1.37
[INFO] [stderr]    Compiling chrono v0.4.6
[INFO] [stderr]    Compiling ordered-float v0.5.1
[INFO] [stderr]    Compiling backtrace v0.3.9
[INFO] [stderr]    Compiling crossbeam-deque v0.5.2
[INFO] [stderr]    Compiling regex v0.2.11
[INFO] [stderr]    Compiling fxhash v0.2.1
[INFO] [stderr]    Compiling env_logger v0.5.13
[INFO] [stderr]    Compiling serde v1.0.78
[INFO] [stderr]    Compiling crossbeam-channel v0.2.5
[INFO] [stderr]    Compiling flate2 v1.0.2
[INFO] [stderr]    Compiling pretty_env_logger v0.2.3 (https://github.com/k3yavi/pretty-env-logger#57963895)
[INFO] [stderr]    Compiling num-rational v0.2.1
[INFO] [stderr]    Compiling crossbeam v0.4.1
[INFO] [stderr]    Compiling num v0.2.0
[INFO] [stderr]    Compiling synstructure v0.9.0
[INFO] [stderr]    Compiling failure_derive v0.1.2
[INFO] [stderr]    Compiling failure v0.1.2
[INFO] [stderr]    Compiling multimap v0.4.0
[INFO] [stderr]    Compiling serde_json v1.0.27
[INFO] [stderr]    Compiling bio-types v0.2.0
[INFO] [stderr]    Compiling boomphf v0.2.1 (https://github.com/10XGenomics/rust-boomphf#93460338)
[INFO] [stderr]    Compiling vec_map v0.8.1
[INFO] [stderr]    Compiling csv v1.0.1
[INFO] [stderr]    Compiling docopt v1.0.1
[INFO] [stderr]    Compiling bincode v1.0.1
[INFO] [stderr]    Compiling bio v0.22.0
[INFO] [stderr]    Compiling debruijn v0.2.0 (https://github.com/10XGenomics/rust-debruijn#4f12ecdc)
[INFO] [stderr]    Compiling debruijn_mapping v0.2.0 (/opt/crater/workdir)
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/utils.rs:48:54
[INFO] [stderr]    |
[INFO] [stderr] 48 | fn _open_with_gz<P: AsRef<Path>>(p: P) -> Result<Box<BufRead>, Error> {
[INFO] [stderr]    |                                                      ^^^^^^^ help: use `dyn`: `dyn BufRead`
[INFO] [stderr]    |
[INFO] [stderr]    = note: #[warn(bare_trait_objects)] on by default
[INFO] [stderr] 
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 2m 03s
[INFO] running `"docker" "inspect" "7812110c12ad91eb1a674475e632fb1d6cfe3024c7b625685bfe11ed05852032"`
[INFO] running `"docker" "rm" "-f" "7812110c12ad91eb1a674475e632fb1d6cfe3024c7b625685bfe11ed05852032"`
[INFO] [stdout] 7812110c12ad91eb1a674475e632fb1d6cfe3024c7b625685bfe11ed05852032
[INFO] running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/beta-1.38-1/worker-3/1.37.0:/opt/crater/target:rw,Z" "-v" "/mnt/big/crater/work/ex/beta-1.38-1/sources/1.37.0/gh/10XGenomics/rust-pseudoaligner:/opt/crater/workdir:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/opt/crater/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/opt/crater/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/opt/crater/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/crater/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/crater/cargo-home" "-e" "RUSTUP_HOME=/opt/crater/rustup-home" "-w" "/opt/crater/workdir" "-m" "1536M" "--network" "none" "rustops/crates-build-env" "/opt/crater/cargo-home/bin/cargo" "+1.37.0" "test" "--frozen" "--no-run"`
[INFO] [stdout] 45c191999c7f6cc27107795e7b03ee17a89841eb7080aeb4f79b3ff4fd78f094
[INFO] running `"docker" "start" "-a" "45c191999c7f6cc27107795e7b03ee17a89841eb7080aeb4f79b3ff4fd78f094"`
[INFO] [stderr]    Compiling debruijn_mapping v0.2.0 (/opt/crater/workdir)
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/utils.rs:48:54
[INFO] [stderr]    |
[INFO] [stderr] 48 | fn _open_with_gz<P: AsRef<Path>>(p: P) -> Result<Box<BufRead>, Error> {
[INFO] [stderr]    |                                                      ^^^^^^^ help: use `dyn`: `dyn BufRead`
[INFO] [stderr]    |
[INFO] [stderr]    = note: #[warn(bare_trait_objects)] on by default
[INFO] [stderr] 
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 3.58s
[INFO] running `"docker" "inspect" "45c191999c7f6cc27107795e7b03ee17a89841eb7080aeb4f79b3ff4fd78f094"`
[INFO] running `"docker" "rm" "-f" "45c191999c7f6cc27107795e7b03ee17a89841eb7080aeb4f79b3ff4fd78f094"`
[INFO] [stdout] 45c191999c7f6cc27107795e7b03ee17a89841eb7080aeb4f79b3ff4fd78f094
[INFO] running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/beta-1.38-1/worker-3/1.37.0:/opt/crater/target:rw,Z" "-v" "/mnt/big/crater/work/ex/beta-1.38-1/sources/1.37.0/gh/10XGenomics/rust-pseudoaligner:/opt/crater/workdir:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/opt/crater/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/opt/crater/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/opt/crater/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/crater/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/crater/cargo-home" "-e" "RUSTUP_HOME=/opt/crater/rustup-home" "-w" "/opt/crater/workdir" "-m" "1536M" "--network" "none" "rustops/crates-build-env" "/opt/crater/cargo-home/bin/cargo" "+1.37.0" "test" "--frozen"`
[INFO] [stdout] 5f274c6d319ed69217b5bd3cfaa9abd3360c97d18c9d20b445ac477500fa001e
[INFO] running `"docker" "start" "-a" "5f274c6d319ed69217b5bd3cfaa9abd3360c97d18c9d20b445ac477500fa001e"`
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 0.19s
[INFO] [stderr]      Running /opt/crater/target/debug/deps/debruijn_mapping-b7ef5f01956870eb
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
[INFO] [stdout] 
[INFO] [stderr]      Running /opt/crater/target/debug/deps/pseudoaligner-c4689cebb80c35fc
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests debruijn_mapping
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
[INFO] [stdout] 
[INFO] running `"docker" "inspect" "5f274c6d319ed69217b5bd3cfaa9abd3360c97d18c9d20b445ac477500fa001e"`
[INFO] running `"docker" "rm" "-f" "5f274c6d319ed69217b5bd3cfaa9abd3360c97d18c9d20b445ac477500fa001e"`
[INFO] [stdout] 5f274c6d319ed69217b5bd3cfaa9abd3360c97d18c9d20b445ac477500fa001e