[INFO] crate libprosic 0.7.3 is already in cache [INFO] extracting crate libprosic 0.7.3 into work/ex/beta-1.37-6/sources/1.36.0/reg/libprosic/0.7.3 [INFO] extracting crate libprosic 0.7.3 into work/ex/beta-1.37-6/sources/beta-2019-07-23/reg/libprosic/0.7.3 [INFO] validating manifest of libprosic-0.7.3 on toolchain 1.36.0 [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+1.36.0" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] validating manifest of libprosic-0.7.3 on toolchain beta-2019-07-23 [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+beta-2019-07-23" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] started frobbing libprosic-0.7.3 [INFO] finished frobbing libprosic-0.7.3 [INFO] frobbed toml for libprosic-0.7.3 written to work/ex/beta-1.37-6/sources/1.36.0/reg/libprosic/0.7.3/Cargo.toml [INFO] started frobbing libprosic-0.7.3 [INFO] finished frobbing libprosic-0.7.3 [INFO] frobbed toml for libprosic-0.7.3 written to work/ex/beta-1.37-6/sources/beta-2019-07-23/reg/libprosic/0.7.3/Cargo.toml [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+1.36.0" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update"` [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+beta-2019-07-23" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update"` [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+1.36.0" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+beta-2019-07-23" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] testing libprosic-0.7.3 against beta-2019-07-23 for beta-1.37-6 [INFO] running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/beta-1.37-6/worker-7/beta-2019-07-23:/opt/crater/target:rw,Z" "-v" "/mnt/big/crater/work/ex/beta-1.37-6/sources/beta-2019-07-23/reg/libprosic/0.7.3:/opt/crater/workdir:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/opt/crater/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/opt/crater/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/opt/crater/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/crater/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/crater/cargo-home" "-e" "RUSTUP_HOME=/opt/crater/rustup-home" "-w" "/opt/crater/workdir" "-m" "1536M" "--network" "none" "rustops/crates-build-env" "/opt/crater/cargo-home/bin/cargo" "+beta-2019-07-23" "build" "--frozen"` [INFO] [stdout] 1d267b52a1abad1452187b29cf756481f144cc0cd0e395e370d0d58072b0cf7c [INFO] running `"docker" "start" "-a" "1d267b52a1abad1452187b29cf756481f144cc0cd0e395e370d0d58072b0cf7c"` [INFO] [stderr] Compiling bindgen v0.36.1 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Compiling bio v0.24.0 [INFO] [stderr] Compiling ndarray v0.6.10 [INFO] [stderr] Compiling linear-map v1.2.0 [INFO] [stderr] Compiling ieee754 v0.2.6 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling c_vec v1.0.12 [INFO] [stderr] Compiling cached v0.7.0 [INFO] [stderr] Compiling clang-sys v0.22.0 [INFO] [stderr] Compiling fs-utils v1.1.1 [INFO] [stderr] Compiling GSL v1.1.0 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling memchr v2.2.1 [INFO] [stderr] Compiling lzma-sys v0.1.14 [INFO] [stderr] Compiling libz-sys v1.0.25 [INFO] [stderr] Compiling bv v0.10.0 [INFO] [stderr] Compiling itertools-num v0.1.3 [INFO] [stderr] Compiling statrs v0.9.0 [INFO] [stderr] Compiling ndarray v0.12.1 [INFO] [stderr] Compiling vec_map v0.8.1 [INFO] [stderr] Compiling multimap v0.4.0 [INFO] [stderr] Compiling rulinalg v0.2.2 [INFO] [stderr] Compiling aho-corasick v0.7.4 [INFO] [stderr] Compiling aho-corasick v0.6.10 [INFO] [stderr] Compiling csv-core v0.1.6 [INFO] [stderr] Compiling bstr v0.2.6 [INFO] [stderr] Compiling clap v2.33.0 [INFO] [stderr] Compiling regex v0.2.11 [INFO] [stderr] Compiling regex v1.2.0 [INFO] [stderr] Compiling rusty-machine v0.4.4 [INFO] [stderr] Compiling csv v1.1.1 [INFO] [stderr] Compiling env_logger v0.5.13 [INFO] [stderr] Compiling bio-types v0.5.1 [INFO] [stderr] Compiling rust-htslib v0.22.0 [INFO] [stderr] Compiling libprosic v0.7.3 (/opt/crater/workdir) [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/call/pairwise.rs:55:62 [INFO] [stderr] | [INFO] [stderr] 55 | ) -> Result>>, Box> [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] | [INFO] [stderr] = note: #[warn(bare_trait_objects)] on by default [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/call/pairwise.rs:116:21 [INFO] [stderr] | [INFO] [stderr] 116 | ) -> Result<(), Box> [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/estimation/alignment_properties.rs:40:68 [INFO] [stderr] | [INFO] [stderr] 40 | pub fn estimate(bam: &mut R) -> Result> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/estimation/alignment_properties.rs:142:33 [INFO] [stderr] | [INFO] [stderr] 142 | ) -> Result> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/estimation/fdr/ev.rs:35:21 [INFO] [stderr] | [INFO] [stderr] 35 | ) -> Result<(), Box> [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/model/evidence/fragments.rs:52:89 [INFO] [stderr] | [INFO] [stderr] 52 | pub fn estimate_insert_size(left: &bam::Record, right: &bam::Record) -> Result> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/model/evidence/fragments.rs:56:68 [INFO] [stderr] | [INFO] [stderr] 56 | let aln = |rec: &bam::Record, cigar| -> Result<(u32, u32), Box> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/model/evidence/fragments.rs:120:41 [INFO] [stderr] | [INFO] [stderr] 120 | ) -> Result<(LogProb, LogProb), Box> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/model/evidence/reads.rs:30:49 [INFO] [stderr] | [INFO] [stderr] 30 | ) -> Result, Box>; [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/model/evidence/reads.rs:56:49 [INFO] [stderr] | [INFO] [stderr] 56 | ) -> Result, Box> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/model/evidence/reads.rs:101:49 [INFO] [stderr] | [INFO] [stderr] 101 | ) -> Result, Box> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/model/evidence/reads.rs:169:49 [INFO] [stderr] | [INFO] [stderr] 169 | ) -> Result, Box> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/model/sample.rs:68:82 [INFO] [stderr] | [INFO] [stderr] 68 | pub fn fill(&mut self, chrom: &[u8], start: u32, end: u32) -> Result<(), Box> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/model/sample.rs:220:39 [INFO] [stderr] | [INFO] [stderr] 220 | ) -> Result, Box> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/model/sample.rs:362:42 [INFO] [stderr] | [INFO] [stderr] 362 | ) -> Result, Box> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/model/sample.rs:363:34 [INFO] [stderr] | [INFO] [stderr] 363 | let mut evidence: RefMut = match variant { [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: use `dyn`: `dyn evidence::reads::AbstractReadEvidence` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/model/sample.rs:409:42 [INFO] [stderr] | [INFO] [stderr] 409 | ) -> Result, Box> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/model/sample.rs:412:44 [INFO] [stderr] | [INFO] [stderr] 412 | -> Result<(LogProb, LogProb), Box> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/model/mod.rs:275:41 [INFO] [stderr] | [INFO] [stderr] 275 | ) -> Result, Box> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/model/mod.rs:416:42 [INFO] [stderr] | [INFO] [stderr] 416 | ) -> Result, Box> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/utils.rs:27:46 [INFO] [stderr] | [INFO] [stderr] 27 | ) -> Result>, Box> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/utils.rs:204:62 [INFO] [stderr] | [INFO] [stderr] 204 | pub fn seq(&mut self, chrom: &[u8]) -> Result<&[u8], Box> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/utils.rs:232:39 [INFO] [stderr] | [INFO] [stderr] 232 | ) -> Result>, Box> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/utils.rs:276:35 [INFO] [stderr] | [INFO] [stderr] 276 | ) -> Result>, Box> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/utils.rs:317:21 [INFO] [stderr] | [INFO] [stderr] 317 | ) -> Result<(), Box> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/utils.rs:367:30 [INFO] [stderr] | [INFO] [stderr] 367 | ) -> Result> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 1m 39s [INFO] running `"docker" "inspect" "1d267b52a1abad1452187b29cf756481f144cc0cd0e395e370d0d58072b0cf7c"` [INFO] running `"docker" "rm" "-f" "1d267b52a1abad1452187b29cf756481f144cc0cd0e395e370d0d58072b0cf7c"` [INFO] [stdout] 1d267b52a1abad1452187b29cf756481f144cc0cd0e395e370d0d58072b0cf7c [INFO] running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/beta-1.37-6/worker-7/beta-2019-07-23:/opt/crater/target:rw,Z" "-v" "/mnt/big/crater/work/ex/beta-1.37-6/sources/beta-2019-07-23/reg/libprosic/0.7.3:/opt/crater/workdir:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/opt/crater/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/opt/crater/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/opt/crater/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/crater/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/crater/cargo-home" "-e" "RUSTUP_HOME=/opt/crater/rustup-home" "-w" "/opt/crater/workdir" "-m" "1536M" "--network" "none" "rustops/crates-build-env" "/opt/crater/cargo-home/bin/cargo" "+beta-2019-07-23" "test" "--frozen" "--no-run"` [INFO] [stdout] 81bc421f55f8bee584fb4598bc70316f9171734a635e5c5ebf6a1c9d9413518d [INFO] running `"docker" "start" "-a" "81bc421f55f8bee584fb4598bc70316f9171734a635e5c5ebf6a1c9d9413518d"` [INFO] [stderr] Compiling memchr v0.1.11 [INFO] [stderr] Compiling thread-id v2.0.0 [INFO] [stderr] Compiling fern v0.4.4 [INFO] [stderr] Compiling flate2 v0.2.20 [INFO] [stderr] Compiling thread_local v0.2.7 [INFO] [stderr] Compiling aho-corasick v0.5.3 [INFO] [stderr] Compiling regex v0.1.80 [INFO] [stderr] Compiling env_logger v0.3.5 [INFO] [stderr] Compiling libprosic v0.7.3 (/opt/crater/workdir) [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/call/pairwise.rs:55:62 [INFO] [stderr] | [INFO] [stderr] 55 | ) -> Result>>, Box> [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] | [INFO] [stderr] = note: #[warn(bare_trait_objects)] on by default [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/call/pairwise.rs:116:21 [INFO] [stderr] | [INFO] [stderr] 116 | ) -> Result<(), Box> [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/estimation/alignment_properties.rs:40:68 [INFO] [stderr] | [INFO] [stderr] 40 | pub fn estimate(bam: &mut R) -> Result> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/estimation/alignment_properties.rs:142:33 [INFO] [stderr] | [INFO] [stderr] 142 | ) -> Result> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/estimation/fdr/ev.rs:35:21 [INFO] [stderr] | [INFO] [stderr] 35 | ) -> Result<(), Box> [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/model/evidence/fragments.rs:52:89 [INFO] [stderr] | [INFO] [stderr] 52 | pub fn estimate_insert_size(left: &bam::Record, right: &bam::Record) -> Result> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/model/evidence/fragments.rs:56:68 [INFO] [stderr] | [INFO] [stderr] 56 | let aln = |rec: &bam::Record, cigar| -> Result<(u32, u32), Box> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/model/evidence/fragments.rs:120:41 [INFO] [stderr] | [INFO] [stderr] 120 | ) -> Result<(LogProb, LogProb), Box> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/model/evidence/reads.rs:30:49 [INFO] [stderr] | [INFO] [stderr] 30 | ) -> Result, Box>; [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/model/evidence/reads.rs:56:49 [INFO] [stderr] | [INFO] [stderr] 56 | ) -> Result, Box> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/model/evidence/reads.rs:101:49 [INFO] [stderr] | [INFO] [stderr] 101 | ) -> Result, Box> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/model/evidence/reads.rs:169:49 [INFO] [stderr] | [INFO] [stderr] 169 | ) -> Result, Box> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/model/sample.rs:68:82 [INFO] [stderr] | [INFO] [stderr] 68 | pub fn fill(&mut self, chrom: &[u8], start: u32, end: u32) -> Result<(), Box> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/model/sample.rs:220:39 [INFO] [stderr] | [INFO] [stderr] 220 | ) -> Result, Box> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/model/sample.rs:362:42 [INFO] [stderr] | [INFO] [stderr] 362 | ) -> Result, Box> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/model/sample.rs:363:34 [INFO] [stderr] | [INFO] [stderr] 363 | let mut evidence: RefMut = match variant { [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: use `dyn`: `dyn evidence::reads::AbstractReadEvidence` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/model/sample.rs:409:42 [INFO] [stderr] | [INFO] [stderr] 409 | ) -> Result, Box> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/model/sample.rs:412:44 [INFO] [stderr] | [INFO] [stderr] 412 | -> Result<(LogProb, LogProb), Box> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/model/mod.rs:275:41 [INFO] [stderr] | [INFO] [stderr] 275 | ) -> Result, Box> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/model/mod.rs:416:42 [INFO] [stderr] | [INFO] [stderr] 416 | ) -> Result, Box> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/utils.rs:27:46 [INFO] [stderr] | [INFO] [stderr] 27 | ) -> Result>, Box> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/utils.rs:204:62 [INFO] [stderr] | [INFO] [stderr] 204 | pub fn seq(&mut self, chrom: &[u8]) -> Result<&[u8], Box> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/utils.rs:232:39 [INFO] [stderr] | [INFO] [stderr] 232 | ) -> Result>, Box> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/utils.rs:276:35 [INFO] [stderr] | [INFO] [stderr] 276 | ) -> Result>, Box> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/utils.rs:317:21 [INFO] [stderr] | [INFO] [stderr] 317 | ) -> Result<(), Box> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/utils.rs:367:30 [INFO] [stderr] | [INFO] [stderr] 367 | ) -> Result> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] error: linking with `cc` failed: exit code: 1 [INFO] [stderr] | [INFO] [stderr] = note: "cc" "-Wl,--as-needed" "-Wl,-z,noexecstack" "-m64" "-L" "/opt/crater/rustup-home/toolchains/beta-2019-07-23-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib" "/opt/crater/target/debug/deps/libprosic-51c19a44800ebf10.libprosic.c0hf35pm-cgu.0.rcgu.o" "/opt/crater/target/debug/deps/libprosic-51c19a44800ebf10.libprosic.c0hf35pm-cgu.1.rcgu.o" "/opt/crater/target/debug/deps/libprosic-51c19a44800ebf10.libprosic.c0hf35pm-cgu.10.rcgu.o" "/opt/crater/target/debug/deps/libprosic-51c19a44800ebf10.libprosic.c0hf35pm-cgu.11.rcgu.o" "/opt/crater/target/debug/deps/libprosic-51c19a44800ebf10.libprosic.c0hf35pm-cgu.12.rcgu.o" "/opt/crater/target/debug/deps/libprosic-51c19a44800ebf10.libprosic.c0hf35pm-cgu.13.rcgu.o" "/opt/crater/target/debug/deps/libprosic-51c19a44800ebf10.libprosic.c0hf35pm-cgu.14.rcgu.o" "/opt/crater/target/debug/deps/libprosic-51c19a44800ebf10.libprosic.c0hf35pm-cgu.15.rcgu.o" "/opt/crater/target/debug/deps/libprosic-51c19a44800ebf10.libprosic.c0hf35pm-cgu.2.rcgu.o" "/opt/crater/target/debug/deps/libprosic-51c19a44800ebf10.libprosic.c0hf35pm-cgu.3.rcgu.o" "/opt/crater/target/debug/deps/libprosic-51c19a44800ebf10.libprosic.c0hf35pm-cgu.4.rcgu.o" "/opt/crater/target/debug/deps/libprosic-51c19a44800ebf10.libprosic.c0hf35pm-cgu.5.rcgu.o" "/opt/crater/target/debug/deps/libprosic-51c19a44800ebf10.libprosic.c0hf35pm-cgu.6.rcgu.o" "/opt/crater/target/debug/deps/libprosic-51c19a44800ebf10.libprosic.c0hf35pm-cgu.7.rcgu.o" "/opt/crater/target/debug/deps/libprosic-51c19a44800ebf10.libprosic.c0hf35pm-cgu.8.rcgu.o" "/opt/crater/target/debug/deps/libprosic-51c19a44800ebf10.libprosic.c0hf35pm-cgu.9.rcgu.o" "-o" "/opt/crater/target/debug/deps/libprosic-51c19a44800ebf10" "/opt/crater/target/debug/deps/libprosic-51c19a44800ebf10.1ko487c173iku28j.rcgu.o" "-Wl,--gc-sections" "-pie" "-Wl,-zrelro" "-Wl,-znow" "-nodefaultlibs" "-L" "/opt/crater/target/debug/deps" "-L" "/opt/crater/target/debug/build/miniz-sys-acaaaedff836c650/out" "-L" "/opt/crater/target/debug/build/rust-htslib-5be0f28f43d8bdd1/out" "-L" "/opt/crater/target/debug/build/bzip2-sys-5ffaf2b43e086c26/out/lib" "-L" "/usr/lib/x86_64-linux-gnu" "-L" "/usr/lib/x86_64-linux-gnu" "-L" "/opt/crater/rustup-home/toolchains/beta-2019-07-23-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-Wl,-Bstatic" "/opt/crater/rustup-home/toolchains/beta-2019-07-23-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libtest-7d9df032c0eb8a14.rlib" "/opt/crater/rustup-home/toolchains/beta-2019-07-23-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libterm-77300aa0d630d98f.rlib" "/opt/crater/rustup-home/toolchains/beta-2019-07-23-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libgetopts-4d48ca12b265d456.rlib" "/opt/crater/rustup-home/toolchains/beta-2019-07-23-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libunicode_width-8869eee15acf0f54.rlib" "/opt/crater/target/debug/deps/libenv_logger-ab0628e0ace5690f.rlib" "/opt/crater/target/debug/deps/libregex-fd1c39d31ace2896.rlib" "/opt/crater/target/debug/deps/libutf8_ranges-02a9ee482eb041c6.rlib" "/opt/crater/target/debug/deps/libregex_syntax-a5eed8ba2f170ebb.rlib" "/opt/crater/target/debug/deps/libthread_local-9e61c6900400dfc9.rlib" "/opt/crater/target/debug/deps/libthread_id-c2957ed2a3ecd452.rlib" "/opt/crater/target/debug/deps/libaho_corasick-360dd609cfcefe9e.rlib" "/opt/crater/target/debug/deps/libmemchr-3633080859d6dd28.rlib" "/opt/crater/target/debug/deps/libcached-69773b17e775d1d9.rlib" "/opt/crater/target/debug/deps/libregex-790fec1f15cf82e5.rlib" "/opt/crater/target/debug/deps/libregex_syntax-02faca48d2f43d09.rlib" "/opt/crater/target/debug/deps/libaho_corasick-5003f07cfd1a3501.rlib" "/opt/crater/target/debug/deps/librusty_machine-b79c804c0d77ecba.rlib" "/opt/crater/target/debug/deps/librulinalg-c0bd0f306776bf8f.rlib" "/opt/crater/target/debug/deps/libnum-afef0f025f3e4a93.rlib" "/opt/crater/target/debug/deps/libnum_iter-6aa8c2e263944e3d.rlib" "/opt/crater/target/debug/deps/libndarray-872f73409ca2599b.rlib" "/opt/crater/target/debug/deps/libnum_complex-5da357fc178f79b8.rlib" "/opt/crater/target/debug/deps/libnum_traits-c3ec1b467bca6158.rlib" "/opt/crater/target/debug/deps/libitertools-aae645925629cabf.rlib" "/opt/crater/target/debug/deps/libapprox-ecf5281917ee9778.rlib" "/opt/crater/target/debug/deps/librgsl-2a95a5c15f4c8086.rlib" "/opt/crater/target/debug/deps/libc_vec-0c288992332fe7e9.rlib" "/opt/crater/target/debug/deps/liblog-bbe9110cf0409309.rlib" "/opt/crater/target/debug/deps/liblog-4d4ce27474bb9998.rlib" "/opt/crater/target/debug/deps/libcfg_if-17244d8fcea476bd.rlib" "/opt/crater/target/debug/deps/librust_htslib-8724b591418bd070.rlib" "/opt/crater/target/debug/deps/liblzma_sys-3ecbb0a4520cffad.rlib" "/opt/crater/target/debug/deps/libbzip2_sys-a6599c59759c3fdc.rlib" "/opt/crater/target/debug/deps/liblibz_sys-7fecc4ac641c0497.rlib" "/opt/crater/target/debug/deps/liblinear_map-edcbae2908f2f4a8.rlib" "/opt/crater/target/debug/deps/liburl-4858f7c80a0a9641.rlib" "/opt/crater/target/debug/deps/libpercent_encoding-880723daba293888.rlib" "/opt/crater/target/debug/deps/libidna-f1bd554acf3de410.rlib" "/opt/crater/target/debug/deps/libunicode_normalization-b016911b6ed6746c.rlib" "/opt/crater/target/debug/deps/libsmallvec-3009c93eda7cf4fa.rlib" "/opt/crater/target/debug/deps/libunicode_bidi-c4ef84e7768feceb.rlib" "/opt/crater/target/debug/deps/libmatches-4743b9188552617d.rlib" "/opt/crater/target/debug/deps/liblazy_static-0e1e36676eed3924.rlib" "/opt/crater/target/debug/deps/libitertools-5c285e176e65a938.rlib" "/opt/crater/target/debug/deps/libieee754-3e184d4e293fe88a.rlib" "/opt/crater/target/debug/deps/libbitflags-3e0496368fb8d844.rlib" "/opt/crater/target/debug/deps/libbio-ba9d374bbb842583.rlib" "/opt/crater/target/debug/deps/libfxhash-fa9b3e4513ced53a.rlib" "/opt/crater/target/debug/deps/libvec_map-2190078678fd859c.rlib" "/opt/crater/target/debug/deps/libstatrs-ec972535699eda4d.rlib" "/opt/crater/target/debug/deps/librand-e5ef9d18ef64c211.rlib" "/opt/crater/target/debug/deps/librand-ab875fcc778d513d.rlib" "/opt/crater/target/debug/deps/libfnv-9c46c9dc8e117f05.rlib" "/opt/crater/target/debug/deps/libbv-46a268c4e0aebc53.rlib" "/opt/crater/target/debug/deps/libordered_float-9f47dd5d16d4d052.rlib" "/opt/crater/target/debug/deps/libnum_integer-35be16e7600d6cb9.rlib" "/opt/crater/target/debug/deps/libnewtype_derive-bce3ef0b423c857d.rlib" "/opt/crater/target/debug/deps/libndarray-ff66d75febced50c.rlib" "/opt/crater/target/debug/deps/libnum_complex-cf92338cbd917405.rlib" "/opt/crater/target/debug/deps/libmatrixmultiply-add3c2ef4a6aa2e3.rlib" "/opt/crater/target/debug/deps/librawpointer-0c16108fbcdeefb9.rlib" "/opt/crater/target/debug/deps/libmultimap-e9f625b969afd64c.rlib" "/opt/crater/target/debug/deps/libitertools_num-0beab66c935d40ce.rlib" "/opt/crater/target/debug/deps/libitertools-ec3709ec2ec15838.rlib" "/opt/crater/target/debug/deps/libeither-09ec7c1188b8d0d0.rlib" "/opt/crater/target/debug/deps/libcustom_derive-c1793975d6464a26.rlib" "/opt/crater/target/debug/deps/libcsv-7119b38362ec5864.rlib" "/opt/crater/target/debug/deps/libryu-2328132eba3746b3.rlib" "/opt/crater/target/debug/deps/libitoa-97a946ec35c116e9.rlib" "/opt/crater/target/debug/deps/libcsv_core-70c7497526cfa19a.rlib" "/opt/crater/target/debug/deps/libbstr-d071c3bfbff9645b.rlib" "/opt/crater/target/debug/deps/libregex_automata-5cec955928a143a3.rlib" "/opt/crater/target/debug/deps/libbyteorder-066131f17ea0c99b.rlib" "/opt/crater/target/debug/deps/libbytecount-42e9d9beb000108d.rlib" "/opt/crater/target/debug/deps/libbit_set-469736b20aa8bbf5.rlib" "/opt/crater/target/debug/deps/libbit_vec-fa07c09034eb3f1d.rlib" "/opt/crater/target/debug/deps/libapprox-0be3ec18c32ebe3c.rlib" "/opt/crater/target/debug/deps/libnum_traits-04277105b9bd2221.rlib" "/opt/crater/target/debug/deps/libbio_types-ba75ff91a9f66d16.rlib" "/opt/crater/target/debug/deps/libserde-8f05aacea72db71d.rlib" "/opt/crater/target/debug/deps/libregex-fecdc7f2f46752e9.rlib" "/opt/crater/target/debug/deps/libutf8_ranges-32fecc95d998aacd.rlib" "/opt/crater/target/debug/deps/libregex_syntax-df3af46a51d0ff63.rlib" "/opt/crater/target/debug/deps/libucd_util-3795c9684c4c7e7c.rlib" "/opt/crater/target/debug/deps/libthread_local-1060038c0757fbc7.rlib" "/opt/crater/target/debug/deps/libaho_corasick-9d7274822310036e.rlib" "/opt/crater/target/debug/deps/libmemchr-e5c086f73a89f97c.rlib" "/opt/crater/target/debug/deps/liblibc-e5ecd3b7a7c52c57.rlib" "/opt/crater/target/debug/deps/liblazy_static-6a4e8ea56a445919.rlib" "/opt/crater/target/debug/deps/libquick_error-7d23d7c8e4749989.rlib" "-Wl,--start-group" "/opt/crater/rustup-home/toolchains/beta-2019-07-23-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libstd-a80a1e8e09cafef8.rlib" "/opt/crater/rustup-home/toolchains/beta-2019-07-23-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libpanic_unwind-e0e6351da805c468.rlib" "/opt/crater/rustup-home/toolchains/beta-2019-07-23-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libbacktrace-e04f54bafc95e331.rlib" "/opt/crater/rustup-home/toolchains/beta-2019-07-23-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libbacktrace_sys-67901d3322495bd5.rlib" "/opt/crater/rustup-home/toolchains/beta-2019-07-23-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/librustc_demangle-bd390b1abaceaec1.rlib" "/opt/crater/rustup-home/toolchains/beta-2019-07-23-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libhashbrown-312dd37fdc7bedfc.rlib" "/opt/crater/rustup-home/toolchains/beta-2019-07-23-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/librustc_std_workspace_alloc-8ed0e51d58d644a3.rlib" "/opt/crater/rustup-home/toolchains/beta-2019-07-23-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libunwind-8a423c320a6c707f.rlib" "/opt/crater/rustup-home/toolchains/beta-2019-07-23-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libcfg_if-d6a95598e2238263.rlib" "/opt/crater/rustup-home/toolchains/beta-2019-07-23-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/liblibc-d231614b153016eb.rlib" "/opt/crater/rustup-home/toolchains/beta-2019-07-23-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/liballoc-3821619027f463e4.rlib" "/opt/crater/rustup-home/toolchains/beta-2019-07-23-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/librustc_std_workspace_core-1cfd794d18771a44.rlib" "/opt/crater/rustup-home/toolchains/beta-2019-07-23-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libcore-dcf33cf10c2452ef.rlib" "-Wl,--end-group" "/opt/crater/rustup-home/toolchains/beta-2019-07-23-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libcompiler_builtins-c258fea34bf64bce.rlib" "-Wl,-Bdynamic" "-llzma" "-lz" "-lutil" "-lutil" "-ldl" "-lrt" "-lpthread" "-lgcc_s" "-lc" "-lm" "-lrt" "-lpthread" "-lutil" "-lutil" [INFO] [stderr] = note: /opt/crater/target/debug/deps/librgsl-2a95a5c15f4c8086.rlib(rgsl-2a95a5c15f4c8086.rgsl.6d9eyoaz-cgu.11.rcgu.o): In function `rgsl::randist::gaussian::gaussian_pdf': [INFO] [stderr] /opt/crater/cargo-home/registry/src/github.com-1ecc6299db9ec823/GSL-1.1.0/src/randist/gaussian.rs:20: undefined reference to `gsl_ran_gaussian_pdf' [INFO] [stderr] /opt/crater/target/debug/deps/librgsl-2a95a5c15f4c8086.rlib(rgsl-2a95a5c15f4c8086.rgsl.6d9eyoaz-cgu.11.rcgu.o): In function `rgsl::randist::gaussian::ugaussian_P': [INFO] [stderr] /opt/crater/cargo-home/registry/src/github.com-1ecc6299db9ec823/GSL-1.1.0/src/randist/gaussian.rs:73: undefined reference to `gsl_cdf_ugaussian_P' [INFO] [stderr] /opt/crater/target/debug/deps/librgsl-2a95a5c15f4c8086.rlib(rgsl-2a95a5c15f4c8086.rgsl.6d9eyoaz-cgu.9.rcgu.o): In function `rgsl::error::erfc': [INFO] [stderr] /opt/crater/cargo-home/registry/src/github.com-1ecc6299db9ec823/GSL-1.1.0/src/error.rs:28: undefined reference to `gsl_sf_erfc' [INFO] [stderr] collect2: error: ld returned 1 exit status [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] error: aborting due to previous error [INFO] [stderr] [INFO] [stderr] error: Could not compile `libprosic`. [INFO] [stderr] [INFO] [stderr] To learn more, run the command again with --verbose. [INFO] running `"docker" "inspect" "81bc421f55f8bee584fb4598bc70316f9171734a635e5c5ebf6a1c9d9413518d"` [INFO] running `"docker" "rm" "-f" "81bc421f55f8bee584fb4598bc70316f9171734a635e5c5ebf6a1c9d9413518d"` [INFO] [stdout] 81bc421f55f8bee584fb4598bc70316f9171734a635e5c5ebf6a1c9d9413518d