[INFO] crate flann 0.1.0 is already in cache [INFO] extracting crate flann 0.1.0 into work/ex/beta-1.37-6/sources/1.36.0/reg/flann/0.1.0 [INFO] extracting crate flann 0.1.0 into work/ex/beta-1.37-6/sources/beta-2019-07-23/reg/flann/0.1.0 [INFO] validating manifest of flann-0.1.0 on toolchain 1.36.0 [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+1.36.0" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] validating manifest of flann-0.1.0 on toolchain beta-2019-07-23 [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+beta-2019-07-23" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] started frobbing flann-0.1.0 [INFO] finished frobbing flann-0.1.0 [INFO] frobbed toml for flann-0.1.0 written to work/ex/beta-1.37-6/sources/1.36.0/reg/flann/0.1.0/Cargo.toml [INFO] started frobbing flann-0.1.0 [INFO] finished frobbing flann-0.1.0 [INFO] frobbed toml for flann-0.1.0 written to work/ex/beta-1.37-6/sources/beta-2019-07-23/reg/flann/0.1.0/Cargo.toml [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+1.36.0" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update"` [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+beta-2019-07-23" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update"` [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+1.36.0" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] [stderr] Blocking waiting for file lock on package cache lock [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+beta-2019-07-23" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] testing flann-0.1.0 against 1.36.0 for beta-1.37-6 [INFO] running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/beta-1.37-6/worker-5/1.36.0:/opt/crater/target:rw,Z" "-v" "/mnt/big/crater/work/ex/beta-1.37-6/sources/1.36.0/reg/flann/0.1.0:/opt/crater/workdir:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/opt/crater/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/opt/crater/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/opt/crater/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/crater/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/crater/cargo-home" "-e" "RUSTUP_HOME=/opt/crater/rustup-home" "-w" "/opt/crater/workdir" "-m" "1536M" "--network" "none" "rustops/crates-build-env" "/opt/crater/cargo-home/bin/cargo" "+1.36.0" "build" "--frozen"` [INFO] [stdout] 3b8500c05a08dc19e58c48d87ba32a021beef639a5102bd052155f2bd5a0611e [INFO] running `"docker" "start" "-a" "3b8500c05a08dc19e58c48d87ba32a021beef639a5102bd052155f2bd5a0611e"` [INFO] [stderr] Compiling flann-sys v0.1.0 [INFO] [stderr] error: failed to run custom build command for `flann-sys v0.1.0` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/crater/target/debug/build/flann-sys-7243ec41d0ebd2aa/build-script-build` (exit code: 101) [INFO] [stderr] --- stdout [INFO] [stderr] cargo:rustc-link-lib=gomp [INFO] [stderr] cargo:rustc-link-lib=stdc++ [INFO] [stderr] running: "cmake" "/opt/crater/cargo-home/registry/src/github.com-1ecc6299db9ec823/flann-sys-0.1.0/flann" "-DBUILD_EXAMPLES=OFF" "-DBUILD_TESTS=OFF" "-DBUILD_DOC=OFF" "-DBUILD_PYTHON_BINDINGS=OFF" "-DBUILD_MATLAB_BINDINGS=OFF" "-DUSE_OPENMP=ON" "-DCMAKE_INSTALL_PREFIX=/opt/crater/target/debug/build/flann-sys-428595eac997c32c/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_C_COMPILER=/usr/bin/cc" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_CXX_COMPILER=/usr/bin/c++" "-DCMAKE_BUILD_TYPE=Debug" [INFO] [stderr] -- The C compiler identification is GNU 6.3.0 [INFO] [stderr] -- The CXX compiler identification is GNU 6.3.0 [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc -- works [INFO] [stderr] -- Detecting C compiler ABI info [INFO] [stderr] -- Detecting C compiler ABI info - done [INFO] [stderr] -- Detecting C compile features [INFO] [stderr] -- Detecting C compile features - done [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ -- works [INFO] [stderr] -- Detecting CXX compiler ABI info [INFO] [stderr] -- Detecting CXX compiler ABI info - done [INFO] [stderr] -- Detecting CXX compile features [INFO] [stderr] -- Detecting CXX compile features - done [INFO] [stderr] -- Found PythonInterp: /usr/bin/python (found version "2.7.13") [INFO] [stderr] -- Could NOT find HDF5 (missing: HDF5_LIBRARIES HDF5_INCLUDE_DIRS) [INFO] [stderr] -- Could NOT find GTest (missing: GTEST_LIBRARY GTEST_INCLUDE_DIR GTEST_MAIN_LIBRARY) [INFO] [stderr] -- Try OpenMP C flag = [-fopenmp] [INFO] [stderr] -- Performing Test OpenMP_FLAG_DETECTED [INFO] [stderr] -- Performing Test OpenMP_FLAG_DETECTED - Success [INFO] [stderr] -- Try OpenMP CXX flag = [-fopenmp] [INFO] [stderr] -- Performing Test OpenMP_FLAG_DETECTED [INFO] [stderr] -- Performing Test OpenMP_FLAG_DETECTED - Success [INFO] [stderr] -- Found OpenMP: -fopenmp [INFO] [stderr] -- Install prefix: /opt/crater/target/debug/build/flann-sys-428595eac997c32c/out [INFO] [stderr] -- Build type: Debug [INFO] [stderr] -- Building C bindings: ON [INFO] [stderr] -- Building examples: OFF [INFO] [stderr] -- Building tests: OFF [INFO] [stderr] -- Building documentation: OFF [INFO] [stderr] -- Building python bindings: OFF [INFO] [stderr] -- Building matlab bindings: OFF [INFO] [stderr] -- Building CUDA library: OFF [INFO] [stderr] -- Using OpenMP support: ON [INFO] [stderr] -- Using MPI support: OFF [INFO] [stderr] -- Configuring incomplete, errors occurred! [INFO] [stderr] See also "/opt/crater/target/debug/build/flann-sys-428595eac997c32c/out/build/CMakeFiles/CMakeOutput.log". [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] CMake Warning at CMakeLists.txt:78 (message): [INFO] [stderr] hdf5 library not found, some tests will not be run [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] CMake Warning at CMakeLists.txt:117 (message): [INFO] [stderr] gtest library not found, some tests will not be run [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] CMake Warning (dev) at /usr/share/cmake-3.7/Modules/FindOpenMP.cmake:179 (if): [INFO] [stderr] if given arguments: [INFO] [stderr] [INFO] [stderr] "TRUE" [INFO] [stderr] [INFO] [stderr] An argument named "TRUE" appears in a conditional statement. Policy [INFO] [stderr] CMP0012 is not set: if() recognizes numbers and boolean constants. Run [INFO] [stderr] "cmake --help-policy CMP0012" for policy details. Use the cmake_policy [INFO] [stderr] command to set the policy and suppress this warning. [INFO] [stderr] Call Stack (most recent call first): [INFO] [stderr] /usr/share/cmake-3.7/Modules/FindOpenMP.cmake:224 (_OPENMP_GET_SPEC_DATE) [INFO] [stderr] CMakeLists.txt:122 (find_package) [INFO] [stderr] This warning is for project developers. Use -Wno-dev to suppress it. [INFO] [stderr] [INFO] [stderr] CMake Warning (dev) at /usr/share/cmake-3.7/Modules/FindOpenMP.cmake:179 (if): [INFO] [stderr] if given arguments: [INFO] [stderr] [INFO] [stderr] "TRUE" [INFO] [stderr] [INFO] [stderr] An argument named "TRUE" appears in a conditional statement. Policy [INFO] [stderr] CMP0012 is not set: if() recognizes numbers and boolean constants. Run [INFO] [stderr] "cmake --help-policy CMP0012" for policy details. Use the cmake_policy [INFO] [stderr] command to set the policy and suppress this warning. [INFO] [stderr] Call Stack (most recent call first): [INFO] [stderr] /usr/share/cmake-3.7/Modules/FindOpenMP.cmake:266 (_OPENMP_GET_SPEC_DATE) [INFO] [stderr] CMakeLists.txt:122 (find_package) [INFO] [stderr] This warning is for project developers. Use -Wno-dev to suppress it. [INFO] [stderr] [INFO] [stderr] CMake Error: Could not open file for write in copy operation /opt/crater/cargo-home/registry/src/github.com-1ecc6299db9ec823/flann-sys-0.1.0/flann/src/cpp/flann/config.h.tmp [INFO] [stderr] CMake Error: : System Error: Read-only file system [INFO] [stderr] CMake Error at src/cpp/CMakeLists.txt:5 (configure_file): [INFO] [stderr] configure_file Problem configuring file [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] thread 'main' panicked at ' [INFO] [stderr] command did not execute successfully, got: exit code: 1 [INFO] [stderr] [INFO] [stderr] build script failed, must exit now', /opt/crater/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.40/src/lib.rs:832:5 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x55d318b29d53 - std::sys::unix::backtrace::tracing::imp::unwind_backtrace::h6485381528590a55 [INFO] [stderr] at src/libstd/sys/unix/backtrace/tracing/gcc_s.rs:39 [INFO] [stderr] 1: 0x55d318b24f9b - std::sys_common::backtrace::_print::h49a82ae9552e35c7 [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:71 [INFO] [stderr] 2: 0x55d318b28a36 - std::panicking::default_hook::{{closure}}::he20974adbefcc046 [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:59 [INFO] [stderr] at src/libstd/panicking.rs:197 [INFO] [stderr] 3: 0x55d318b287c9 - std::panicking::default_hook::he4af6af4ac7fef7b [INFO] [stderr] at src/libstd/panicking.rs:211 [INFO] [stderr] 4: 0x55d318b2913f - std::panicking::rust_panic_with_hook::h057ff03eb4c8000f [INFO] [stderr] at src/libstd/panicking.rs:474 [INFO] [stderr] 5: 0x55d318b28cc1 - std::panicking::continue_panic_fmt::ha6d6ae144369025b [INFO] [stderr] at src/libstd/panicking.rs:381 [INFO] [stderr] 6: 0x55d318b28c0e - std::panicking::begin_panic_fmt::he54eae869ed71eb1 [INFO] [stderr] at src/libstd/panicking.rs:336 [INFO] [stderr] 7: 0x55d3184847d5 - cmake::fail::h54445b707760f9f9 [INFO] [stderr] at /opt/crater/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.40/src/lib.rs:832 [INFO] [stderr] 8: 0x55d318484113 - cmake::run::hb0722c5b998708fd [INFO] [stderr] at /opt/crater/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.40/src/lib.rs:810 [INFO] [stderr] 9: 0x55d31847f83f - cmake::Config::build::h3a73b1cad4fd8231 [INFO] [stderr] at /opt/crater/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.40/src/lib.rs:648 [INFO] [stderr] 10: 0x55d318479787 - build_script_build::main::hcf89dff5f404b12a [INFO] [stderr] at /opt/crater/cargo-home/registry/src/github.com-1ecc6299db9ec823/flann-sys-0.1.0/build.rs:30 [INFO] [stderr] 11: 0x55d318479bef - std::rt::lang_start::{{closure}}::hdd2599f4132df4b4 [INFO] [stderr] at /rustc/a53f9df32fbb0b5f4382caaad8f1a46f36ea887c/src/libstd/rt.rs:64 [INFO] [stderr] 12: 0x55d318b28b42 - std::panicking::try::do_call::hc3d8373a0b215f51 [INFO] [stderr] at src/libstd/rt.rs:49 [INFO] [stderr] at src/libstd/panicking.rs:293 [INFO] [stderr] 13: 0x55d318b31209 - __rust_maybe_catch_panic [INFO] [stderr] at src/libpanic_unwind/lib.rs:85 [INFO] [stderr] 14: 0x55d318b2964c - std::rt::lang_start_internal::he5218c8b95d395f2 [INFO] [stderr] at src/libstd/panicking.rs:272 [INFO] [stderr] at src/libstd/panic.rs:394 [INFO] [stderr] at src/libstd/rt.rs:48 [INFO] [stderr] 15: 0x55d318479bc8 - std::rt::lang_start::hd5315c52632b3693 [INFO] [stderr] at /rustc/a53f9df32fbb0b5f4382caaad8f1a46f36ea887c/src/libstd/rt.rs:64 [INFO] [stderr] 16: 0x55d318479b69 - main [INFO] [stderr] 17: 0x7f3b7b3112e0 - __libc_start_main [INFO] [stderr] 18: 0x55d318479409 - _start [INFO] [stderr] 19: 0x0 - [INFO] [stderr] [INFO] running `"docker" "inspect" "3b8500c05a08dc19e58c48d87ba32a021beef639a5102bd052155f2bd5a0611e"` [INFO] running `"docker" "rm" "-f" "3b8500c05a08dc19e58c48d87ba32a021beef639a5102bd052155f2bd5a0611e"` [INFO] [stdout] 3b8500c05a08dc19e58c48d87ba32a021beef639a5102bd052155f2bd5a0611e