[INFO] updating cached repository wheaton5/het_snp_kmers [INFO] running `"git" "fetch" "--all"` [INFO] [stdout] Fetching origin [INFO] [stderr] From git://github.com/wheaton5/het_snp_kmers [INFO] [stderr] * branch HEAD -> FETCH_HEAD [INFO] running `"git" "clone" "work/cache/sources/gh/wheaton5/het_snp_kmers" "work/ex/beta-1.37-6/sources/1.36.0/gh/wheaton5/het_snp_kmers"` [INFO] [stderr] Cloning into 'work/ex/beta-1.37-6/sources/1.36.0/gh/wheaton5/het_snp_kmers'... [INFO] [stderr] done. [INFO] running `"git" "clone" "work/cache/sources/gh/wheaton5/het_snp_kmers" "work/ex/beta-1.37-6/sources/beta-2019-07-23/gh/wheaton5/het_snp_kmers"` [INFO] [stderr] Cloning into 'work/ex/beta-1.37-6/sources/beta-2019-07-23/gh/wheaton5/het_snp_kmers'... [INFO] [stderr] done. [INFO] running `"git" "rev-parse" "HEAD"` [INFO] [stdout] d6dc5ee320c4e01a4297da4d6c1fe2db8fc40514 [INFO] sha for GitHub repo wheaton5/het_snp_kmers: d6dc5ee320c4e01a4297da4d6c1fe2db8fc40514 [INFO] validating manifest of wheaton5/het_snp_kmers on toolchain 1.36.0 [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+1.36.0" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] validating manifest of wheaton5/het_snp_kmers on toolchain beta-2019-07-23 [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+beta-2019-07-23" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] started frobbing wheaton5/het_snp_kmers [INFO] finished frobbing wheaton5/het_snp_kmers [INFO] frobbed toml for wheaton5/het_snp_kmers written to work/ex/beta-1.37-6/sources/1.36.0/gh/wheaton5/het_snp_kmers/Cargo.toml [INFO] started frobbing wheaton5/het_snp_kmers [INFO] finished frobbing wheaton5/het_snp_kmers [INFO] frobbed toml for wheaton5/het_snp_kmers written to work/ex/beta-1.37-6/sources/beta-2019-07-23/gh/wheaton5/het_snp_kmers/Cargo.toml [INFO] crate wheaton5/het_snp_kmers already has a lockfile, it will not be regenerated [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+1.36.0" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Updating git repository `https://github.com/wheaton5/dna_io.git` [INFO] [stderr] error: the lock file /mnt/big/crater/work/ex/beta-1.37-6/sources/1.36.0/gh/wheaton5/het_snp_kmers/Cargo.lock needs to be updated but --locked was passed to prevent this [INFO] the lockfile is outdated, regenerating it [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+1.36.0" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update"` [INFO] [stderr] Updating git repository `https://github.com/10XGenomics/rust-debruijn.git` [INFO] [stderr] Updating git repository `https://github.com/wheaton5/dna_io.git` [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+beta-2019-07-23" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update"` [INFO] [stderr] Updating git repository `https://github.com/10XGenomics/rust-debruijn.git` [INFO] [stderr] Updating git repository `https://github.com/wheaton5/dna_io.git` [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+1.36.0" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] [stderr] Blocking waiting for file lock on package cache lock [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+beta-2019-07-23" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] testing wheaton5/het_snp_kmers against 1.36.0 for beta-1.37-6 [INFO] running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/beta-1.37-6/worker-5/1.36.0:/opt/crater/target:rw,Z" "-v" "/mnt/big/crater/work/ex/beta-1.37-6/sources/1.36.0/gh/wheaton5/het_snp_kmers:/opt/crater/workdir:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/opt/crater/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/opt/crater/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/opt/crater/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/crater/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/crater/cargo-home" "-e" "RUSTUP_HOME=/opt/crater/rustup-home" "-w" "/opt/crater/workdir" "-m" "1536M" "--network" "none" "rustops/crates-build-env" "/opt/crater/cargo-home/bin/cargo" "+1.36.0" "build" "--frozen"` [INFO] [stdout] e24cec6ad22f0a3b1c5b754a88775cb5c9a357e709523fcbda83805f673188b1 [INFO] running `"docker" "start" "-a" "e24cec6ad22f0a3b1c5b754a88775cb5c9a357e709523fcbda83805f673188b1"` [INFO] [stderr] Compiling log v0.4.7 [INFO] [stderr] Compiling bindgen v0.51.0 [INFO] [stderr] Compiling shlex v0.1.1 [INFO] [stderr] Compiling ieee754 v0.2.6 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling spin v0.4.10 [INFO] [stderr] Compiling linear-map v1.2.0 [INFO] [stderr] Compiling bzip2-sys v0.1.7 [INFO] [stderr] Compiling nom v4.2.3 [INFO] [stderr] Compiling clang-sys v0.28.0 [INFO] [stderr] Compiling textwrap v0.9.0 [INFO] [stderr] Compiling fs-utils v1.1.1 [INFO] [stderr] Compiling libz-sys v1.0.25 [INFO] [stderr] Compiling lzma-sys v0.1.14 [INFO] [stderr] Compiling wyhash v0.3.0 [INFO] [stderr] Compiling bloom v0.3.2 [INFO] [stderr] Compiling concurrent-hashmap v0.2.2 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling flate2 v1.0.9 [INFO] [stderr] Compiling clap v2.27.1 [INFO] [stderr] Compiling failure v0.1.5 [INFO] [stderr] Compiling serde v1.0.97 [INFO] [stderr] Compiling env_logger v0.6.2 [INFO] [stderr] Compiling which v2.0.1 [INFO] [stderr] Compiling cexpr v0.3.5 [INFO] [stderr] Compiling bio-types v0.5.1 [INFO] [stderr] Compiling boomphf v0.5.2 [INFO] [stderr] Compiling serde_json v1.0.40 [INFO] [stderr] Compiling debruijn v0.3.0 (https://github.com/10XGenomics/rust-debruijn.git#9c7caf19) [INFO] [stderr] Compiling rust-htslib v0.24.0 [INFO] [stderr] Compiling dna_io v0.1.0 (https://github.com/wheaton5/dna_io.git#a640f47b) [INFO] [stderr] Compiling het_snp_kmers v0.1.0 (/opt/crater/workdir) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 2m 14s [INFO] running `"docker" "inspect" "e24cec6ad22f0a3b1c5b754a88775cb5c9a357e709523fcbda83805f673188b1"` [INFO] running `"docker" "rm" "-f" "e24cec6ad22f0a3b1c5b754a88775cb5c9a357e709523fcbda83805f673188b1"` [INFO] [stdout] e24cec6ad22f0a3b1c5b754a88775cb5c9a357e709523fcbda83805f673188b1 [INFO] running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/beta-1.37-6/worker-5/1.36.0:/opt/crater/target:rw,Z" "-v" "/mnt/big/crater/work/ex/beta-1.37-6/sources/1.36.0/gh/wheaton5/het_snp_kmers:/opt/crater/workdir:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/opt/crater/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/opt/crater/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/opt/crater/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/crater/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/crater/cargo-home" "-e" "RUSTUP_HOME=/opt/crater/rustup-home" "-w" "/opt/crater/workdir" "-m" "1536M" "--network" "none" "rustops/crates-build-env" "/opt/crater/cargo-home/bin/cargo" "+1.36.0" "test" "--frozen" "--no-run"` [INFO] [stdout] 9eec75b3eedef9934b60dbfe7c5001ae2232b35e7dc5bad69542ade13eee856e [INFO] running `"docker" "start" "-a" "9eec75b3eedef9934b60dbfe7c5001ae2232b35e7dc5bad69542ade13eee856e"` [INFO] [stderr] Compiling het_snp_kmers v0.1.0 (/opt/crater/workdir) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 1.36s [INFO] running `"docker" "inspect" "9eec75b3eedef9934b60dbfe7c5001ae2232b35e7dc5bad69542ade13eee856e"` [INFO] running `"docker" "rm" "-f" "9eec75b3eedef9934b60dbfe7c5001ae2232b35e7dc5bad69542ade13eee856e"` [INFO] [stdout] 9eec75b3eedef9934b60dbfe7c5001ae2232b35e7dc5bad69542ade13eee856e [INFO] running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/beta-1.37-6/worker-5/1.36.0:/opt/crater/target:rw,Z" "-v" "/mnt/big/crater/work/ex/beta-1.37-6/sources/1.36.0/gh/wheaton5/het_snp_kmers:/opt/crater/workdir:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/opt/crater/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/opt/crater/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/opt/crater/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/crater/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/crater/cargo-home" "-e" "RUSTUP_HOME=/opt/crater/rustup-home" "-w" "/opt/crater/workdir" "-m" "1536M" "--network" "none" "rustops/crates-build-env" "/opt/crater/cargo-home/bin/cargo" "+1.36.0" "test" "--frozen"` [INFO] [stdout] a3b0cc5feaa8b6fa1b1db4ac1142909b7eb05e29f1c05aef6c7f62056c513695 [INFO] running `"docker" "start" "-a" "a3b0cc5feaa8b6fa1b1db4ac1142909b7eb05e29f1c05aef6c7f62056c513695"` [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 0.15s [INFO] [stderr] Running /opt/crater/target/debug/deps/het_snp_kmers-08cb946f5beeb095 [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] running `"docker" "inspect" "a3b0cc5feaa8b6fa1b1db4ac1142909b7eb05e29f1c05aef6c7f62056c513695"` [INFO] running `"docker" "rm" "-f" "a3b0cc5feaa8b6fa1b1db4ac1142909b7eb05e29f1c05aef6c7f62056c513695"` [INFO] [stdout] a3b0cc5feaa8b6fa1b1db4ac1142909b7eb05e29f1c05aef6c7f62056c513695