[INFO] updating cached repository esrice/trio_binning
[INFO] running `"git" "fetch" "--all"`
[INFO] [stdout] Fetching origin
[INFO] [stderr] From git://github.com/esrice/trio_binning
[INFO] [stderr]  * branch            HEAD       -> FETCH_HEAD
[INFO] running `"git" "clone" "work/cache/sources/gh/esrice/trio_binning" "work/ex/beta-1.37-6/sources/1.36.0/gh/esrice/trio_binning"`
[INFO] [stderr] Cloning into 'work/ex/beta-1.37-6/sources/1.36.0/gh/esrice/trio_binning'...
[INFO] [stderr] done.
[INFO] running `"git" "clone" "work/cache/sources/gh/esrice/trio_binning" "work/ex/beta-1.37-6/sources/beta-2019-07-23/gh/esrice/trio_binning"`
[INFO] [stderr] Cloning into 'work/ex/beta-1.37-6/sources/beta-2019-07-23/gh/esrice/trio_binning'...
[INFO] [stderr] done.
[INFO] running `"git" "rev-parse" "HEAD"`
[INFO] [stdout] dfbf9bf5b607849a4d23f31002da129d8e7a8057
[INFO] sha for GitHub repo esrice/trio_binning: dfbf9bf5b607849a4d23f31002da129d8e7a8057
[INFO] validating manifest of esrice/trio_binning on toolchain 1.36.0
[INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+1.36.0" "read-manifest" "--manifest-path" "Cargo.toml"`
[INFO] validating manifest of esrice/trio_binning on toolchain beta-2019-07-23
[INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+beta-2019-07-23" "read-manifest" "--manifest-path" "Cargo.toml"`
[INFO] started frobbing esrice/trio_binning
[INFO] finished frobbing esrice/trio_binning
[INFO] frobbed toml for esrice/trio_binning written to work/ex/beta-1.37-6/sources/1.36.0/gh/esrice/trio_binning/Cargo.toml
[INFO] started frobbing esrice/trio_binning
[INFO] finished frobbing esrice/trio_binning
[INFO] frobbed toml for esrice/trio_binning written to work/ex/beta-1.37-6/sources/beta-2019-07-23/gh/esrice/trio_binning/Cargo.toml
[INFO] crate esrice/trio_binning already has a lockfile, it will not be regenerated
[INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+1.36.0" "fetch" "--locked" "--manifest-path" "Cargo.toml"`
[INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+beta-2019-07-23" "fetch" "--locked" "--manifest-path" "Cargo.toml"`
[INFO] testing esrice/trio_binning against 1.36.0 for beta-1.37-6
[INFO] running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/beta-1.37-6/worker-6/1.36.0:/opt/crater/target:rw,Z" "-v" "/mnt/big/crater/work/ex/beta-1.37-6/sources/1.36.0/gh/esrice/trio_binning:/opt/crater/workdir:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/opt/crater/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/opt/crater/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/opt/crater/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/crater/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/crater/cargo-home" "-e" "RUSTUP_HOME=/opt/crater/rustup-home" "-w" "/opt/crater/workdir" "-m" "1536M" "--network" "none" "rustops/crates-build-env" "/opt/crater/cargo-home/bin/cargo" "+1.36.0" "build" "--frozen"`
[INFO] [stdout] d8c77d968754a2b2cf63667896a128859f2912a4a66b519e2557c6f19cebefa2
[INFO] running `"docker" "start" "-a" "d8c77d968754a2b2cf63667896a128859f2912a4a66b519e2557c6f19cebefa2"`
[INFO] [stderr]    Compiling proc-macro2 v0.4.13
[INFO] [stderr]    Compiling bindgen v0.36.1
[INFO] [stderr]    Compiling ieee754 v0.2.2
[INFO] [stderr]    Compiling linear-map v1.2.0
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling term_size v0.3.1
[INFO] [stderr]    Compiling which v1.0.5
[INFO] [stderr]    Compiling bzip2-sys v0.1.6 (https://github.com/alexcrichton/bzip2-rs.git#54aef435)
[INFO] [stderr]    Compiling log v0.4.4
[INFO] [stderr]    Compiling fs-utils v1.1.0
[INFO] [stderr]    Compiling libz-sys v1.0.25
[INFO] [stderr]    Compiling lzma-sys v0.1.11
[INFO] [stderr]    Compiling nom v3.2.1
[INFO] [stderr]    Compiling smallvec v0.6.4
[INFO] [stderr]    Compiling buf_redux v0.7.1
[INFO] [stderr]    Compiling textwrap v0.10.0
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling libloading v0.5.0
[INFO] [stderr]    Compiling miniz-sys v0.1.10
[INFO] [stderr]    Compiling parking_lot_core v0.2.14
[INFO] [stderr]    Compiling regex v1.0.2
[INFO] [stderr]    Compiling regex v0.2.11
[INFO] [stderr]    Compiling crossbeam-deque v0.5.2
[INFO] [stderr]    Compiling clang-sys v0.22.0
[INFO] [stderr]    Compiling flate2 v1.0.2
[INFO] [stderr]    Compiling clap v2.32.0
[INFO] [stderr]    Compiling parking_lot v0.6.3
[INFO] [stderr]    Compiling quote v0.6.8
[INFO] [stderr]    Compiling cexpr v0.2.3
[INFO] [stderr]    Compiling syn v0.14.9
[INFO] [stderr]    Compiling crossbeam-channel v0.2.4
[INFO] [stderr]    Compiling crossbeam v0.4.1
[INFO] [stderr]    Compiling env_logger v0.5.12
[INFO] [stderr]    Compiling serde_derive v1.0.72
[INFO] [stderr]    Compiling bio-types v0.2.0
[INFO] [stderr]    Compiling seq_io v0.3.0
[INFO] [stderr]    Compiling rust-htslib v0.21.1-alpha.0 (https://github.com/rust-bio/rust-htslib.git?rev=1f9736e#1f9736ef)
[INFO] [stderr]    Compiling trio_binning v0.1.0 (/opt/crater/workdir)
[INFO] [stderr] warning: variable does not need to be mutable
[INFO] [stderr]    --> src/classify.rs:128:17
[INFO] [stderr]     |
[INFO] [stderr] 128 |             let mut haplotype;
[INFO] [stderr]     |                 ----^^^^^^^^^
[INFO] [stderr]     |                 |
[INFO] [stderr]     |                 help: remove this `mut`
[INFO] [stderr]     |
[INFO] [stderr]     = note: #[warn(unused_mut)] on by default
[INFO] [stderr] 
[INFO] [stderr] warning: variable does not need to be mutable
[INFO] [stderr]   --> src/threads.rs:86:25
[INFO] [stderr]    |
[INFO] [stderr] 86 |                     let mut haplotype;
[INFO] [stderr]    |                         ----^^^^^^^^^
[INFO] [stderr]    |                         |
[INFO] [stderr]    |                         help: remove this `mut`
[INFO] [stderr] 
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 2m 29s
[INFO] running `"docker" "inspect" "d8c77d968754a2b2cf63667896a128859f2912a4a66b519e2557c6f19cebefa2"`
[INFO] running `"docker" "rm" "-f" "d8c77d968754a2b2cf63667896a128859f2912a4a66b519e2557c6f19cebefa2"`
[INFO] [stdout] d8c77d968754a2b2cf63667896a128859f2912a4a66b519e2557c6f19cebefa2
[INFO] running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/beta-1.37-6/worker-6/1.36.0:/opt/crater/target:rw,Z" "-v" "/mnt/big/crater/work/ex/beta-1.37-6/sources/1.36.0/gh/esrice/trio_binning:/opt/crater/workdir:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/opt/crater/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/opt/crater/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/opt/crater/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/crater/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/crater/cargo-home" "-e" "RUSTUP_HOME=/opt/crater/rustup-home" "-w" "/opt/crater/workdir" "-m" "1536M" "--network" "none" "rustops/crates-build-env" "/opt/crater/cargo-home/bin/cargo" "+1.36.0" "test" "--frozen" "--no-run"`
[INFO] [stdout] d8d717d0bb5ef4def0d0f3e7f6b6d1656ff268d21532fc1ffa0279f8ccdaf16b
[INFO] running `"docker" "start" "-a" "d8d717d0bb5ef4def0d0f3e7f6b6d1656ff268d21532fc1ffa0279f8ccdaf16b"`
[INFO] [stderr]    Compiling trio_binning v0.1.0 (/opt/crater/workdir)
[INFO] [stderr] warning: variable does not need to be mutable
[INFO] [stderr]    --> src/classify.rs:128:17
[INFO] [stderr]     |
[INFO] [stderr] 128 |             let mut haplotype;
[INFO] [stderr]     |                 ----^^^^^^^^^
[INFO] [stderr]     |                 |
[INFO] [stderr]     |                 help: remove this `mut`
[INFO] [stderr]     |
[INFO] [stderr]     = note: #[warn(unused_mut)] on by default
[INFO] [stderr] 
[INFO] [stderr] warning: variable does not need to be mutable
[INFO] [stderr]   --> src/threads.rs:86:25
[INFO] [stderr]    |
[INFO] [stderr] 86 |                     let mut haplotype;
[INFO] [stderr]    |                         ----^^^^^^^^^
[INFO] [stderr]    |                         |
[INFO] [stderr]    |                         help: remove this `mut`
[INFO] [stderr] 
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 4.20s
[INFO] running `"docker" "inspect" "d8d717d0bb5ef4def0d0f3e7f6b6d1656ff268d21532fc1ffa0279f8ccdaf16b"`
[INFO] running `"docker" "rm" "-f" "d8d717d0bb5ef4def0d0f3e7f6b6d1656ff268d21532fc1ffa0279f8ccdaf16b"`
[INFO] [stdout] d8d717d0bb5ef4def0d0f3e7f6b6d1656ff268d21532fc1ffa0279f8ccdaf16b
[INFO] running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/beta-1.37-6/worker-6/1.36.0:/opt/crater/target:rw,Z" "-v" "/mnt/big/crater/work/ex/beta-1.37-6/sources/1.36.0/gh/esrice/trio_binning:/opt/crater/workdir:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/opt/crater/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/opt/crater/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/opt/crater/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/crater/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/crater/cargo-home" "-e" "RUSTUP_HOME=/opt/crater/rustup-home" "-w" "/opt/crater/workdir" "-m" "1536M" "--network" "none" "rustops/crates-build-env" "/opt/crater/cargo-home/bin/cargo" "+1.36.0" "test" "--frozen"`
[INFO] [stdout] 1f1e7384addfdc30e1ebcccfc241259b0a26b171ee6a9c07bea40d1c2b66bacc
[INFO] running `"docker" "start" "-a" "1f1e7384addfdc30e1ebcccfc241259b0a26b171ee6a9c07bea40d1c2b66bacc"`
[INFO] [stderr]     Blocking waiting for file lock on package cache lock
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 0.17s
[INFO] [stderr]      Running /opt/crater/target/debug/deps/trio_binning-44d68530e253d6c9
[INFO] [stdout] 
[INFO] [stdout] running 9 tests
[INFO] [stdout] test kmer::tests::canonical ... ok
[INFO] [stdout] test kmer::tests::bits_reversible ... ok
[INFO] [stdout] test classify::tests::test_count ... ok
[INFO] [stdout] test kmer::tests::revcomp_reversible ... ok
[INFO] [stdout] test kmer::tests::invalid_canonical ... ok
[INFO] [stdout] test kmer::tests::too_long_bits_to_kmer ... ok
[INFO] [stdout] test kmer::tests::invalid_kmer_base ... ok
[INFO] [stdout] test kmer::tests::invalid_revcomp_base ... ok
[INFO] [stdout] test kmer::tests::too_long_kmer_to_bits ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 9 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
[INFO] [stdout] 
[INFO] [stderr]      Running /opt/crater/target/debug/deps/classify_by_alignment-96fcc254c20f6675
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
[INFO] [stdout] 
[INFO] [stderr]      Running /opt/crater/target/debug/deps/classify_by_kmers-7822e26967891788
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests trio_binning
[INFO] [stdout] 
[INFO] [stdout] running 1 test
[INFO] [stdout] test src/classify.rs - classify::open_writer (line 157) ... ignored
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 1 ignored; 0 measured; 0 filtered out
[INFO] [stdout] 
[INFO] running `"docker" "inspect" "1f1e7384addfdc30e1ebcccfc241259b0a26b171ee6a9c07bea40d1c2b66bacc"`
[INFO] running `"docker" "rm" "-f" "1f1e7384addfdc30e1ebcccfc241259b0a26b171ee6a9c07bea40d1c2b66bacc"`
[INFO] [stdout] 1f1e7384addfdc30e1ebcccfc241259b0a26b171ee6a9c07bea40d1c2b66bacc