[INFO] updating cached repository chfi/rust-qtlreaper [INFO] running `"git" "fetch" "--all"` [INFO] [stdout] Fetching origin [INFO] [stderr] From git://github.com/chfi/rust-qtlreaper [INFO] [stderr] * branch HEAD -> FETCH_HEAD [INFO] running `"git" "clone" "work/cache/sources/gh/chfi/rust-qtlreaper" "work/ex/beta-1.37-6/sources/1.36.0/gh/chfi/rust-qtlreaper"` [INFO] [stderr] Cloning into 'work/ex/beta-1.37-6/sources/1.36.0/gh/chfi/rust-qtlreaper'... [INFO] [stderr] done. [INFO] running `"git" "clone" "work/cache/sources/gh/chfi/rust-qtlreaper" "work/ex/beta-1.37-6/sources/beta-2019-07-23/gh/chfi/rust-qtlreaper"` [INFO] [stderr] Cloning into 'work/ex/beta-1.37-6/sources/beta-2019-07-23/gh/chfi/rust-qtlreaper'... [INFO] [stderr] done. [INFO] running `"git" "rev-parse" "HEAD"` [INFO] [stdout] bf1901645206763d660a2499889f42d369672d79 [INFO] sha for GitHub repo chfi/rust-qtlreaper: bf1901645206763d660a2499889f42d369672d79 [INFO] validating manifest of chfi/rust-qtlreaper on toolchain 1.36.0 [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+1.36.0" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] validating manifest of chfi/rust-qtlreaper on toolchain beta-2019-07-23 [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+beta-2019-07-23" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] started frobbing chfi/rust-qtlreaper [INFO] finished frobbing chfi/rust-qtlreaper [INFO] frobbed toml for chfi/rust-qtlreaper written to work/ex/beta-1.37-6/sources/1.36.0/gh/chfi/rust-qtlreaper/Cargo.toml [INFO] started frobbing chfi/rust-qtlreaper [INFO] finished frobbing chfi/rust-qtlreaper [INFO] frobbed toml for chfi/rust-qtlreaper written to work/ex/beta-1.37-6/sources/beta-2019-07-23/gh/chfi/rust-qtlreaper/Cargo.toml [INFO] crate chfi/rust-qtlreaper already has a lockfile, it will not be regenerated [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+1.36.0" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+beta-2019-07-23" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] testing chfi/rust-qtlreaper against 1.36.0 for beta-1.37-6 [INFO] running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/beta-1.37-6/worker-4/1.36.0:/opt/crater/target:rw,Z" "-v" "/mnt/big/crater/work/ex/beta-1.37-6/sources/1.36.0/gh/chfi/rust-qtlreaper:/opt/crater/workdir:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/opt/crater/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/opt/crater/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/opt/crater/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/crater/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/crater/cargo-home" "-e" "RUSTUP_HOME=/opt/crater/rustup-home" "-w" "/opt/crater/workdir" "-m" "1536M" "--network" "none" "rustops/crates-build-env" "/opt/crater/cargo-home/bin/cargo" "+1.36.0" "build" "--frozen"` [INFO] [stdout] 755c375068b7c1889ac0285b77f631e5a4871391a53f32ac34e1f4745dba0c76 [INFO] running `"docker" "start" "-a" "755c375068b7c1889ac0285b77f631e5a4871391a53f32ac34e1f4745dba0c76"` [INFO] [stderr] Compiling rayon-core v1.4.1 [INFO] [stderr] Compiling structopt-derive v0.2.15 [INFO] [stderr] Compiling serde_json v1.0.39 [INFO] [stderr] Compiling rayon v1.0.3 [INFO] [stderr] Compiling structopt v0.2.15 [INFO] [stderr] Compiling qtlreaper v0.1.2 (/opt/crater/workdir) [INFO] [stderr] warning: unused variable: `n` [INFO] [stderr] --> src/regression.rs:149:9 [INFO] [stderr] | [INFO] [stderr] 149 | let n = traits.len(); [INFO] [stderr] | ^ help: consider prefixing with an underscore: `_n` [INFO] [stderr] | [INFO] [stderr] = note: #[warn(unused_variables)] on by default [INFO] [stderr] [INFO] [stderr] warning: unused variable: `i` [INFO] [stderr] --> src/regression.rs:164:9 [INFO] [stderr] | [INFO] [stderr] 164 | for i in 0..n_test { [INFO] [stderr] | ^ help: consider prefixing with an underscore: `_i` [INFO] [stderr] [INFO] [stderr] warning: constant item is never used: `PERMUTATION_TESTSIZE` [INFO] [stderr] --> src/regression.rs:5:1 [INFO] [stderr] | [INFO] [stderr] 5 | const PERMUTATION_TESTSIZE: usize = 1000; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: #[warn(dead_code)] on by default [INFO] [stderr] [INFO] [stderr] warning: function is never used: `regression_2n_variance` [INFO] [stderr] --> src/regression.rs:251:1 [INFO] [stderr] | [INFO] [stderr] 251 | / fn regression_2n_variance( [INFO] [stderr] 252 | | traits: &[f64], [INFO] [stderr] 253 | | genotypes: &[f64], [INFO] [stderr] 254 | | variance: &[f64], [INFO] [stderr] ... | [INFO] [stderr] 298 | | } [INFO] [stderr] 299 | | } [INFO] [stderr] | |_^ [INFO] [stderr] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 21.38s [INFO] running `"docker" "inspect" "755c375068b7c1889ac0285b77f631e5a4871391a53f32ac34e1f4745dba0c76"` [INFO] running `"docker" "rm" "-f" "755c375068b7c1889ac0285b77f631e5a4871391a53f32ac34e1f4745dba0c76"` [INFO] [stdout] 755c375068b7c1889ac0285b77f631e5a4871391a53f32ac34e1f4745dba0c76 [INFO] running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/beta-1.37-6/worker-4/1.36.0:/opt/crater/target:rw,Z" "-v" "/mnt/big/crater/work/ex/beta-1.37-6/sources/1.36.0/gh/chfi/rust-qtlreaper:/opt/crater/workdir:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/opt/crater/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/opt/crater/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/opt/crater/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/crater/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/crater/cargo-home" "-e" "RUSTUP_HOME=/opt/crater/rustup-home" "-w" "/opt/crater/workdir" "-m" "1536M" "--network" "none" "rustops/crates-build-env" "/opt/crater/cargo-home/bin/cargo" "+1.36.0" "test" "--frozen" "--no-run"` [INFO] [stdout] 5cddc2930ea31ad0ec759a2ef17219b228c15521e087a90fb7c9a57dc6dc4c7e [INFO] running `"docker" "start" "-a" "5cddc2930ea31ad0ec759a2ef17219b228c15521e087a90fb7c9a57dc6dc4c7e"` [INFO] [stderr] Compiling qtlreaper v0.1.2 (/opt/crater/workdir) [INFO] [stderr] warning: unused variable: `n` [INFO] [stderr] --> src/regression.rs:149:9 [INFO] [stderr] | [INFO] [stderr] 149 | let n = traits.len(); [INFO] [stderr] | ^ help: consider prefixing with an underscore: `_n` [INFO] [stderr] | [INFO] [stderr] = note: #[warn(unused_variables)] on by default [INFO] [stderr] [INFO] [stderr] warning: unused variable: `i` [INFO] [stderr] --> src/regression.rs:164:9 [INFO] [stderr] | [INFO] [stderr] 164 | for i in 0..n_test { [INFO] [stderr] | ^ help: consider prefixing with an underscore: `_i` [INFO] [stderr] [INFO] [stderr] warning: constant item is never used: `PERMUTATION_TESTSIZE` [INFO] [stderr] --> src/regression.rs:5:1 [INFO] [stderr] | [INFO] [stderr] 5 | const PERMUTATION_TESTSIZE: usize = 1000; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: #[warn(dead_code)] on by default [INFO] [stderr] [INFO] [stderr] warning: function is never used: `regression_2n_variance` [INFO] [stderr] --> src/regression.rs:251:1 [INFO] [stderr] | [INFO] [stderr] 251 | / fn regression_2n_variance( [INFO] [stderr] 252 | | traits: &[f64], [INFO] [stderr] 253 | | genotypes: &[f64], [INFO] [stderr] 254 | | variance: &[f64], [INFO] [stderr] ... | [INFO] [stderr] 298 | | } [INFO] [stderr] 299 | | } [INFO] [stderr] | |_^ [INFO] [stderr] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 3.60s [INFO] running `"docker" "inspect" "5cddc2930ea31ad0ec759a2ef17219b228c15521e087a90fb7c9a57dc6dc4c7e"` [INFO] running `"docker" "rm" "-f" "5cddc2930ea31ad0ec759a2ef17219b228c15521e087a90fb7c9a57dc6dc4c7e"` [INFO] [stdout] 5cddc2930ea31ad0ec759a2ef17219b228c15521e087a90fb7c9a57dc6dc4c7e [INFO] running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/beta-1.37-6/worker-4/1.36.0:/opt/crater/target:rw,Z" "-v" "/mnt/big/crater/work/ex/beta-1.37-6/sources/1.36.0/gh/chfi/rust-qtlreaper:/opt/crater/workdir:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/opt/crater/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/opt/crater/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/opt/crater/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/crater/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/crater/cargo-home" "-e" "RUSTUP_HOME=/opt/crater/rustup-home" "-w" "/opt/crater/workdir" "-m" "1536M" "--network" "none" "rustops/crates-build-env" "/opt/crater/cargo-home/bin/cargo" "+1.36.0" "test" "--frozen"` [INFO] [stdout] 54f28d76984b2b37e40ba795d39047349bb4291976e1fb3c119c50004b3cb1a2 [INFO] running `"docker" "start" "-a" "54f28d76984b2b37e40ba795d39047349bb4291976e1fb3c119c50004b3cb1a2"` [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 0.10s [INFO] [stderr] Running /opt/crater/target/debug/deps/qtlreaper-714367cf3fb24556 [INFO] [stdout] [INFO] [stdout] running 3 tests [INFO] [stdout] test geneobject::tests::it_can_parse_metadata ... ok [INFO] [stdout] test geneobject::tests::it_can_parse_header ... ok [INFO] [stdout] test geneobject::tests::it_can_estimate_unknown_genotypes ... FAILED [INFO] [stderr] error: test failed, to rerun pass '--lib' [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] [INFO] [stdout] ---- geneobject::tests::it_can_estimate_unknown_genotypes stdout ---- [INFO] [stdout] thread 'geneobject::tests::it_can_estimate_unknown_genotypes' panicked at 'assertion failed: `(left == right)` [INFO] [stdout] left: `[Locus { dominance: None, genotype: [(Mat, -1.0), (Mat, -1.0), (Pat, 1.0)], marker: Marker { name: "Mk1", centi_morgan: 10.0, mega_basepair: None, chromosome: "1" } }, Locus { dominance: None, genotype: [(Unk, -0.18523506128077272), (Pat, 1.0), (Unk, 0.9616255554798838)], marker: Marker { name: "Mk2", centi_morgan: 30.3, mega_basepair: None, chromosome: "1" } }, Locus { dominance: None, genotype: [(Unk, 0.18906668494617707), (Unk, 0.3421367343627406), (Pat, 1.0)], marker: Marker { name: "Mk3", centi_morgan: 40.1, mega_basepair: None, chromosome: "1" } }, Locus { dominance: None, genotype: [(Unk, 0.5826065314914579), (Unk, -0.32233300305265566), (Unk, 0.3223330030526552)], marker: Marker { name: "Mk4", centi_morgan: 50.2, mega_basepair: None, chromosome: "1" } }, Locus { dominance: None, genotype: [(Pat, 1.0), (Mat, -1.0), (Unk, -0.34213673436274084)], marker: Marker { name: "Mk5", centi_morgan: 60.3, mega_basepair: None, chromosome: "1" } }, Locus { dominance: None, genotype: [(Pat, 1.0), (Mat, -1.0), (Mat, -1.0)], marker: Marker { name: "Mk6", centi_morgan: 70.1, mega_basepair: None, chromosome: "1" } }]`, [INFO] [stdout] right: `[Locus { dominance: None, genotype: [(Mat, -1.0), (Mat, -1.0), (Pat, 1.0)], marker: Marker { name: "Mk1", centi_morgan: 10.0, mega_basepair: None, chromosome: "1" } }, Locus { dominance: None, genotype: [(Unk, -0.18523506128077272), (Pat, 1.0), (Unk, 0.9616255554798838)], marker: Marker { name: "Mk2", centi_morgan: 30.3, mega_basepair: None, chromosome: "1" } }, Locus { dominance: None, genotype: [(Unk, 0.18906668494617707), (Unk, 0.3421367343627405), (Pat, 1.0)], marker: Marker { name: "Mk3", centi_morgan: 40.1, mega_basepair: None, chromosome: "1" } }, Locus { dominance: None, genotype: [(Unk, 0.5826065314914579), (Unk, -0.3223330030526561), (Unk, 0.3223330030526552)], marker: Marker { name: "Mk4", centi_morgan: 50.2, mega_basepair: None, chromosome: "1" } }, Locus { dominance: None, genotype: [(Pat, 1.0), (Mat, -1.0), (Unk, -0.34213673436274084)], marker: Marker { name: "Mk5", centi_morgan: 60.3, mega_basepair: None, chromosome: "1" } }, Locus { dominance: None, genotype: [(Pat, 1.0), (Mat, -1.0), (Mat, -1.0)], marker: Marker { name: "Mk6", centi_morgan: 70.1, mega_basepair: None, chromosome: "1" } }]`', src/geneobject.rs:895:9 [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x557ec1b56563 - std::sys::unix::backtrace::tracing::imp::unwind_backtrace::h6485381528590a55 [INFO] [stdout] at src/libstd/sys/unix/backtrace/tracing/gcc_s.rs:39 [INFO] [stdout] 1: 0x557ec1b51e9b - std::sys_common::backtrace::_print::h49a82ae9552e35c7 [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:71 [INFO] [stdout] 2: 0x557ec1b552a6 - std::panicking::default_hook::{{closure}}::he20974adbefcc046 [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:59 [INFO] [stdout] at src/libstd/panicking.rs:197 [INFO] [stdout] 3: 0x557ec1b54fce - std::panicking::default_hook::he4af6af4ac7fef7b [INFO] [stdout] at src/libstd/panicking.rs:208 [INFO] [stdout] 4: 0x557ec1b559af - std::panicking::rust_panic_with_hook::h057ff03eb4c8000f [INFO] [stdout] at src/libstd/panicking.rs:474 [INFO] [stdout] 5: 0x557ec1b55531 - std::panicking::continue_panic_fmt::ha6d6ae144369025b [INFO] [stdout] at src/libstd/panicking.rs:381 [INFO] [stdout] 6: 0x557ec1b5547e - std::panicking::begin_panic_fmt::he54eae869ed71eb1 [INFO] [stdout] at src/libstd/panicking.rs:336 [INFO] [stdout] 7: 0x557ec1af739a - qtlreaper::geneobject::tests::it_can_estimate_unknown_genotypes::h2796b2b26d12c483 [INFO] [stdout] at src/geneobject.rs:895 [INFO] [stdout] 8: 0x557ec1af5709 - qtlreaper::geneobject::tests::it_can_estimate_unknown_genotypes::{{closure}}::hc25322ef3a2568d6 [INFO] [stdout] at src/geneobject.rs:780 [INFO] [stdout] 9: 0x557ec1ae8ced - core::ops::function::FnOnce::call_once::haa96f7b4a84aacdd [INFO] [stdout] at /rustc/a53f9df32fbb0b5f4382caaad8f1a46f36ea887c/src/libcore/ops/function.rs:231 [INFO] [stdout] 10: 0x557ec1b087ee - as core::ops::function::FnOnce>::call_once::h6b004fa8f4fc1608 [INFO] [stdout] at /rustc/a53f9df32fbb0b5f4382caaad8f1a46f36ea887c/src/liballoc/boxed.rs:704 [INFO] [stdout] 11: 0x557ec1b586c9 - __rust_maybe_catch_panic [INFO] [stdout] at src/libpanic_unwind/lib.rs:85 [INFO] [stdout] 12: 0x557ec1b230e7 - test::run_test::run_test_inner::{{closure}}::h9a4d23c41d058d37 [INFO] [stdout] at /rustc/a53f9df32fbb0b5f4382caaad8f1a46f36ea887c/src/libstd/panicking.rs:272 [INFO] [stdout] at /rustc/a53f9df32fbb0b5f4382caaad8f1a46f36ea887c/src/libstd/panic.rs:394 [INFO] [stdout] at src/libtest/lib.rs:1468 [INFO] [stdout] 13: 0x557ec1afdb04 - std::sys_common::backtrace::__rust_begin_short_backtrace::h3765d76361a33ff7 [INFO] [stdout] at /rustc/a53f9df32fbb0b5f4382caaad8f1a46f36ea887c/src/libstd/sys_common/backtrace.rs:136 [INFO] [stdout] 14: 0x557ec1b01bb4 - std::panicking::try::do_call::h6f86e980b52f74d5 [INFO] [stdout] at /rustc/a53f9df32fbb0b5f4382caaad8f1a46f36ea887c/src/libstd/thread/mod.rs:470 [INFO] [stdout] at /rustc/a53f9df32fbb0b5f4382caaad8f1a46f36ea887c/src/libstd/panic.rs:315 [INFO] [stdout] at /rustc/a53f9df32fbb0b5f4382caaad8f1a46f36ea887c/src/libstd/panicking.rs:293 [INFO] [stdout] 15: 0x557ec1b586c9 - __rust_maybe_catch_panic [INFO] [stdout] at src/libpanic_unwind/lib.rs:85 [INFO] [stdout] 16: 0x557ec1b021c1 - core::ops::function::FnOnce::call_once{{vtable.shim}}::h760b8a2b155f54c3 [INFO] [stdout] at /rustc/a53f9df32fbb0b5f4382caaad8f1a46f36ea887c/src/libstd/panicking.rs:272 [INFO] [stdout] at /rustc/a53f9df32fbb0b5f4382caaad8f1a46f36ea887c/src/libstd/panic.rs:394 [INFO] [stdout] at /rustc/a53f9df32fbb0b5f4382caaad8f1a46f36ea887c/src/libstd/thread/mod.rs:469 [INFO] [stdout] at /rustc/a53f9df32fbb0b5f4382caaad8f1a46f36ea887c/src/libcore/ops/function.rs:231 [INFO] [stdout] 17: 0x557ec1b49c7e - as core::ops::function::FnOnce>::call_once::h805c3cc89d534c05 [INFO] [stdout] at /rustc/a53f9df32fbb0b5f4382caaad8f1a46f36ea887c/src/liballoc/boxed.rs:704 [INFO] [stdout] 18: 0x557ec1b57daf - std::sys::unix::thread::Thread::new::thread_start::h6f10b78f26c98dc6 [INFO] [stdout] at /rustc/a53f9df32fbb0b5f4382caaad8f1a46f36ea887c/src/liballoc/boxed.rs:704 [INFO] [stdout] at src/libstd/sys_common/thread.rs:13 [INFO] [stdout] at src/libstd/sys/unix/thread.rs:79 [INFO] [stdout] 19: 0x7fdaef7fb4a3 - start_thread [INFO] [stdout] 20: 0x7fdaef326d0e - __clone [INFO] [stdout] 21: 0x0 - [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] geneobject::tests::it_can_estimate_unknown_genotypes [INFO] [stdout] [INFO] [stdout] test result: FAILED. 2 passed; 1 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] running `"docker" "inspect" "54f28d76984b2b37e40ba795d39047349bb4291976e1fb3c119c50004b3cb1a2"` [INFO] running `"docker" "rm" "-f" "54f28d76984b2b37e40ba795d39047349bb4291976e1fb3c119c50004b3cb1a2"` [INFO] [stdout] 54f28d76984b2b37e40ba795d39047349bb4291976e1fb3c119c50004b3cb1a2