[INFO] cloning repository Helkafen/vcf_pwm
[INFO] running `"git" "clone" "--bare" "git://github.com/Helkafen/vcf_pwm.git" "work/cache/sources/gh/Helkafen/vcf_pwm"`
[INFO] [stderr] Cloning into bare repository 'work/cache/sources/gh/Helkafen/vcf_pwm'...
[INFO] running `"git" "clone" "work/cache/sources/gh/Helkafen/vcf_pwm" "work/ex/beta-1.37-6/sources/1.36.0/gh/Helkafen/vcf_pwm"`
[INFO] [stderr] Cloning into 'work/ex/beta-1.37-6/sources/1.36.0/gh/Helkafen/vcf_pwm'...
[INFO] [stderr] done.
[INFO] running `"git" "clone" "work/cache/sources/gh/Helkafen/vcf_pwm" "work/ex/beta-1.37-6/sources/beta-2019-07-23/gh/Helkafen/vcf_pwm"`
[INFO] [stderr] Cloning into 'work/ex/beta-1.37-6/sources/beta-2019-07-23/gh/Helkafen/vcf_pwm'...
[INFO] [stderr] done.
[INFO] running `"git" "rev-parse" "HEAD"`
[INFO] [stdout] f5c087a39f6a467b68c81e8343349b5547d47c60
[INFO] sha for GitHub repo Helkafen/vcf_pwm: f5c087a39f6a467b68c81e8343349b5547d47c60
[INFO] validating manifest of Helkafen/vcf_pwm on toolchain 1.36.0
[INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+1.36.0" "read-manifest" "--manifest-path" "Cargo.toml"`
[INFO] validating manifest of Helkafen/vcf_pwm on toolchain beta-2019-07-23
[INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+beta-2019-07-23" "read-manifest" "--manifest-path" "Cargo.toml"`
[INFO] started frobbing Helkafen/vcf_pwm
[INFO] finished frobbing Helkafen/vcf_pwm
[INFO] frobbed toml for Helkafen/vcf_pwm written to work/ex/beta-1.37-6/sources/1.36.0/gh/Helkafen/vcf_pwm/Cargo.toml
[INFO] started frobbing Helkafen/vcf_pwm
[INFO] finished frobbing Helkafen/vcf_pwm
[INFO] frobbed toml for Helkafen/vcf_pwm written to work/ex/beta-1.37-6/sources/beta-2019-07-23/gh/Helkafen/vcf_pwm/Cargo.toml
[INFO] crate Helkafen/vcf_pwm already has a lockfile, it will not be regenerated
[INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+1.36.0" "fetch" "--locked" "--manifest-path" "Cargo.toml"`
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded bgzip v0.0.3
[INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+beta-2019-07-23" "fetch" "--locked" "--manifest-path" "Cargo.toml"`
[INFO] testing Helkafen/vcf_pwm against 1.36.0 for beta-1.37-6
[INFO] running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/beta-1.37-6/worker-2/1.36.0:/opt/crater/target:rw,Z" "-v" "/mnt/big/crater/work/ex/beta-1.37-6/sources/1.36.0/gh/Helkafen/vcf_pwm:/opt/crater/workdir:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/opt/crater/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/opt/crater/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/opt/crater/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/crater/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/crater/cargo-home" "-e" "RUSTUP_HOME=/opt/crater/rustup-home" "-w" "/opt/crater/workdir" "-m" "1536M" "--network" "none" "rustops/crates-build-env" "/opt/crater/cargo-home/bin/cargo" "+1.36.0" "build" "--frozen"`
[INFO] [stdout] c6b6ac85ea54af0ef3ae4864323b48f9167ba0aa16dcd5a15353a6a05d9c339b
[INFO] running `"docker" "start" "-a" "c6b6ac85ea54af0ef3ae4864323b48f9167ba0aa16dcd5a15353a6a05d9c339b"`
[INFO] [stderr]    Compiling syn v0.15.39
[INFO] [stderr]    Compiling memchr v2.2.1
[INFO] [stderr]    Compiling serde v1.0.94
[INFO] [stderr]    Compiling regex v1.1.9
[INFO] [stderr]    Compiling bindgen v0.50.0
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]    Compiling shlex v0.1.1
[INFO] [stderr]    Compiling ndarray v0.12.1
[INFO] [stderr]    Compiling fixedbitset v0.1.9
[INFO] [stderr]    Compiling bit-vec v0.5.1
[INFO] [stderr]    Compiling bio v0.28.2
[INFO] [stderr]    Compiling strum v0.13.0
[INFO] [stderr]    Compiling bytecount v0.3.2
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling linear-map v1.2.0
[INFO] [stderr]    Compiling ieee754 v0.2.6
[INFO] [stderr]    Compiling backtrace-sys v0.1.30
[INFO] [stderr]    Compiling libloading v0.5.2
[INFO] [stderr]    Compiling nom v4.2.3
[INFO] [stderr]    Compiling miniz-sys v0.1.12
[INFO] [stderr]    Compiling bzip2-sys v0.1.7
[INFO] [stderr]    Compiling clang-sys v0.28.0
[INFO] [stderr]    Compiling log v0.4.6
[INFO] [stderr]    Compiling crossbeam-utils v0.6.5
[INFO] [stderr]    Compiling regex-syntax v0.6.8
[INFO] [stderr]    Compiling fs-utils v1.1.1
[INFO] [stderr]    Compiling num-complex v0.2.3
[INFO] [stderr]    Compiling num-integer v0.1.41
[INFO] [stderr]    Compiling libz-sys v1.0.25
[INFO] [stderr]    Compiling lzma-sys v0.1.14
[INFO] [stderr]    Compiling unicode-normalization v0.1.8
[INFO] [stderr]    Compiling itertools v0.7.11
[INFO] [stderr]    Compiling itertools v0.8.0
[INFO] [stderr]    Compiling bv v0.10.0
[INFO] [stderr]    Compiling petgraph v0.4.13
[INFO] [stderr]    Compiling bit-set v0.5.1
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling atty v0.2.11
[INFO] [stderr]    Compiling num_cpus v1.10.1
[INFO] [stderr]    Compiling fxhash v0.2.1
[INFO] [stderr]    Compiling regex-automata v0.1.7
[INFO] [stderr]    Compiling crossbeam-queue v0.1.2
[INFO] [stderr]    Compiling crossbeam-epoch v0.7.1
[INFO] [stderr]    Compiling ordered-float v1.0.2
[INFO] [stderr]    Compiling approx v0.3.2
[INFO] [stderr]    Compiling itertools-num v0.1.3
[INFO] [stderr]    Compiling flate2 v1.0.9
[INFO] [stderr]    Compiling backtrace v0.3.32
[INFO] [stderr]    Compiling aho-corasick v0.7.4
[INFO] [stderr]    Compiling csv-core v0.1.6
[INFO] [stderr]    Compiling statrs v0.9.0
[INFO] [stderr]    Compiling crossbeam-deque v0.6.3
[INFO] [stderr]    Compiling idna v0.1.5
[INFO] [stderr]    Compiling failure v0.1.5
[INFO] [stderr]    Compiling bgzip v0.0.3
[INFO] [stderr]    Compiling rayon-core v1.5.0
[INFO] [stderr]    Compiling which v2.0.1
[INFO] [stderr]    Compiling cexpr v0.3.5
[INFO] [stderr]    Compiling url v1.7.2
[INFO] [stderr]    Compiling rayon v1.1.0
[INFO] [stderr]    Compiling serde_derive v1.0.94
[INFO] [stderr]    Compiling strum_macros v0.13.0
[INFO] [stderr]    Compiling env_logger v0.6.2
[INFO] [stderr]    Compiling vec_map v0.8.1
[INFO] [stderr]    Compiling bstr v0.2.1
[INFO] [stderr]    Compiling bio-types v0.5.1
[INFO] [stderr]    Compiling multimap v0.4.0
[INFO] [stderr]    Compiling clap v2.33.0
[INFO] [stderr]    Compiling csv v1.1.1
[INFO] [stderr]    Compiling rust-htslib v0.24.0
[INFO] [stderr]    Compiling vcf_pwm v0.1.0 (/opt/crater/workdir)
[INFO] [stderr] warning: unused import: `std::cmp::min`
[INFO] [stderr]   --> src/main.rs:15:5
[INFO] [stderr]    |
[INFO] [stderr] 15 | use std::cmp::min;
[INFO] [stderr]    |     ^^^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: #[warn(unused_imports)] on by default
[INFO] [stderr] 
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 3m 37s
[INFO] running `"docker" "inspect" "c6b6ac85ea54af0ef3ae4864323b48f9167ba0aa16dcd5a15353a6a05d9c339b"`
[INFO] running `"docker" "rm" "-f" "c6b6ac85ea54af0ef3ae4864323b48f9167ba0aa16dcd5a15353a6a05d9c339b"`
[INFO] [stdout] c6b6ac85ea54af0ef3ae4864323b48f9167ba0aa16dcd5a15353a6a05d9c339b
[INFO] running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/beta-1.37-6/worker-2/1.36.0:/opt/crater/target:rw,Z" "-v" "/mnt/big/crater/work/ex/beta-1.37-6/sources/1.36.0/gh/Helkafen/vcf_pwm:/opt/crater/workdir:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/opt/crater/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/opt/crater/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/opt/crater/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/crater/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/crater/cargo-home" "-e" "RUSTUP_HOME=/opt/crater/rustup-home" "-w" "/opt/crater/workdir" "-m" "1536M" "--network" "none" "rustops/crates-build-env" "/opt/crater/cargo-home/bin/cargo" "+1.36.0" "test" "--frozen" "--no-run"`
[INFO] [stdout] cf854cba3a6e541893535a43eefda62989f3cad86a3d8dab255b9dcc1ac67ebb
[INFO] running `"docker" "start" "-a" "cf854cba3a6e541893535a43eefda62989f3cad86a3d8dab255b9dcc1ac67ebb"`
[INFO] [stderr]    Compiling cast v0.2.2
[INFO] [stderr]    Compiling rand_os v0.1.3
[INFO] [stderr]    Compiling rand_xoshiro v0.1.0
[INFO] [stderr]    Compiling serde_json v1.0.40
[INFO] [stderr]    Compiling criterion-plot v0.3.1
[INFO] [stderr]    Compiling tinytemplate v1.0.2
[INFO] [stderr]    Compiling criterion v0.2.11
[INFO] [stderr]    Compiling vcf_pwm v0.1.0 (/opt/crater/workdir)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 18.09s
[INFO] running `"docker" "inspect" "cf854cba3a6e541893535a43eefda62989f3cad86a3d8dab255b9dcc1ac67ebb"`
[INFO] running `"docker" "rm" "-f" "cf854cba3a6e541893535a43eefda62989f3cad86a3d8dab255b9dcc1ac67ebb"`
[INFO] [stdout] cf854cba3a6e541893535a43eefda62989f3cad86a3d8dab255b9dcc1ac67ebb
[INFO] running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/beta-1.37-6/worker-2/1.36.0:/opt/crater/target:rw,Z" "-v" "/mnt/big/crater/work/ex/beta-1.37-6/sources/1.36.0/gh/Helkafen/vcf_pwm:/opt/crater/workdir:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/opt/crater/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/opt/crater/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/opt/crater/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/crater/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/crater/cargo-home" "-e" "RUSTUP_HOME=/opt/crater/rustup-home" "-w" "/opt/crater/workdir" "-m" "1536M" "--network" "none" "rustops/crates-build-env" "/opt/crater/cargo-home/bin/cargo" "+1.36.0" "test" "--frozen"`
[INFO] [stdout] 678f0fac55e4345467ae276b04d30f76553e2e47983d0c923dc5a7b4435c7036
[INFO] running `"docker" "start" "-a" "678f0fac55e4345467ae276b04d30f76553e2e47983d0c923dc5a7b4435c7036"`
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 0.26s
[INFO] [stderr]      Running /opt/crater/target/debug/deps/vcf_pwm-d1884851e084de94
[INFO] [stdout] 
[INFO] [stdout] running 7 tests
[INFO] [stdout] test tests::it_works ... ok
[INFO] [stdout] test tests::test_patch_haplotype_one_deletion ... ok
[INFO] [stdout] test tests::test_matches ... ok
[INFO] [stdout] test tests::test_patch_haplotype_one_insert ... ok
[INFO] [stdout] test tests::test_patch_haplotype_one_snp ... ok
[INFO] [stdout] test tests::test_patch_haplotype_two_snp ... ok
[INFO] [stdout] test tests::test_patch_haplotype_with_no_diff ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 7 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
[INFO] [stdout] 
[INFO] running `"docker" "inspect" "678f0fac55e4345467ae276b04d30f76553e2e47983d0c923dc5a7b4435c7036"`
[INFO] running `"docker" "rm" "-f" "678f0fac55e4345467ae276b04d30f76553e2e47983d0c923dc5a7b4435c7036"`
[INFO] [stdout] 678f0fac55e4345467ae276b04d30f76553e2e47983d0c923dc5a7b4435c7036