Dec 02 11:03:12.623 INFO testing wham-0.9.0 against master#8940af3cea4a9a9deabcaf843b2f8cad9a83fc61 for beta-1.31-5
Dec 02 11:03:12.623 INFO running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/beta-1.31-5/worker-0/master#8940af3cea4a9a9deabcaf843b2f8cad9a83fc61:/target:rw,Z" "-v" "/mnt/big/crater/work/local/test-source/worker-0/beta-1.31-5/master#8940af3cea4a9a9deabcaf843b2f8cad9a83fc61:/source:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/source" "-e" "USER_ID=1000" "-e" "CMD=cargo +8940af3cea4a9a9deabcaf843b2f8cad9a83fc61-alt build --frozen" "-e" "CARGO_TARGET_DIR=/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/cargo-home" "-e" "RUSTUP_HOME=/rustup-home" "-m" "1536M" "--network" "none" "crater"`
Dec 02 11:03:12.863 INFO [stdout] 4b815f3103577df630b44d90b808250a9fc29c985c35da7df9f6919d6ef5ef19
Dec 02 11:03:12.865 INFO running `"docker" "start" "-a" "4b815f3103577df630b44d90b808250a9fc29c985c35da7df9f6919d6ef5ef19"`
Dec 02 11:03:13.798 INFO [stderr] usermod: no changes
Dec 02 11:03:13.931 INFO [stderr]    Compiling c_vec v1.0.12
Dec 02 11:03:13.939 INFO [stderr]    Compiling GSL v1.0.0
Dec 02 11:03:23.099 INFO [stderr]    Compiling wham v0.9.0 (/source)
Dec 02 11:03:24.711 INFO [stderr] warning: unused `std::result::Result` that must be used
Dec 02 11:03:24.711 INFO [stderr]    --> src/io.rs:168:5
Dec 02 11:03:24.711 INFO [stderr]     |
Dec 02 11:03:24.711 INFO [stderr] 168 |     writeln!(buf, "#{}    {}    {}    {}    {}", header, "Free Energy", "+/-", "Probability", "+/-");
Dec 02 11:03:24.711 INFO [stderr]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Dec 02 11:03:24.711 INFO [stderr]     |
Dec 02 11:03:24.711 INFO [stderr]     = note: #[warn(unused_must_use)] on by default
Dec 02 11:03:24.711 INFO [stderr]     = note: this `Result` may be an `Err` variant, which should be handled
Dec 02 11:03:24.711 INFO [stderr]     = note: this error originates in a macro outside of the current crate (in Nightly builds, run with -Z external-macro-backtrace for more info)
Dec 02 11:03:24.711 INFO [stderr] 
Dec 02 11:03:24.727 INFO [stderr] warning: unused `std::result::Result` that must be used
Dec 02 11:03:24.727 INFO [stderr]    --> src/lib.rs:214:2
Dec 02 11:03:24.727 INFO [stderr]     |
Dec 02 11:03:24.727 INFO [stderr] 214 |     writeln!(lock, "# PMF");
Dec 02 11:03:24.727 INFO [stderr]     |     ^^^^^^^^^^^^^^^^^^^^^^^^
Dec 02 11:03:24.727 INFO [stderr]     |
Dec 02 11:03:24.727 INFO [stderr]     = note: this `Result` may be an `Err` variant, which should be handled
Dec 02 11:03:24.727 INFO [stderr]     = note: this error originates in a macro outside of the current crate (in Nightly builds, run with -Z external-macro-backtrace for more info)
Dec 02 11:03:24.727 INFO [stderr] 
Dec 02 11:03:24.727 INFO [stderr] warning: unused `std::result::Result` that must be used
Dec 02 11:03:24.727 INFO [stderr]    --> src/lib.rs:215:2
Dec 02 11:03:24.727 INFO [stderr]     |
Dec 02 11:03:24.727 INFO [stderr] 215 |     writeln!(lock, "#bin\t\tFree Energy\t\t+/-\t\tP(x)\t\t+/-");
Dec 02 11:03:24.727 INFO [stderr]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Dec 02 11:03:24.727 INFO [stderr]     |
Dec 02 11:03:24.727 INFO [stderr]     = note: this `Result` may be an `Err` variant, which should be handled
Dec 02 11:03:24.727 INFO [stderr]     = note: this error originates in a macro outside of the current crate (in Nightly builds, run with -Z external-macro-backtrace for more info)
Dec 02 11:03:24.727 INFO [stderr] 
Dec 02 11:03:24.727 INFO [stderr] warning: unused `std::result::Result` that must be used
Dec 02 11:03:24.727 INFO [stderr]    --> src/lib.rs:217:3
Dec 02 11:03:24.727 INFO [stderr]     |
Dec 02 11:03:24.727 INFO [stderr] 217 |         writeln!(lock, "{:9.5}\t{:9.5}\t{:9.5}\t{:9.5}\t{:9.5}", bin, A[bin], A_std[bin], P[bin], P_std[bin]);
Dec 02 11:03:24.727 INFO [stderr]     |         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Dec 02 11:03:24.727 INFO [stderr]     |
Dec 02 11:03:24.727 INFO [stderr]     = note: this `Result` may be an `Err` variant, which should be handled
Dec 02 11:03:24.728 INFO [stderr]     = note: this error originates in a macro outside of the current crate (in Nightly builds, run with -Z external-macro-backtrace for more info)
Dec 02 11:03:24.728 INFO [stderr] 
Dec 02 11:03:24.728 INFO [stderr] warning: unused `std::result::Result` that must be used
Dec 02 11:03:24.728 INFO [stderr]    --> src/lib.rs:219:2
Dec 02 11:03:24.728 INFO [stderr]     |
Dec 02 11:03:24.728 INFO [stderr] 219 |     writeln!(lock, "# Bias offsets");
Dec 02 11:03:24.728 INFO [stderr]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Dec 02 11:03:24.728 INFO [stderr]     |
Dec 02 11:03:24.728 INFO [stderr]     = note: this `Result` may be an `Err` variant, which should be handled
Dec 02 11:03:24.728 INFO [stderr]     = note: this error originates in a macro outside of the current crate (in Nightly builds, run with -Z external-macro-backtrace for more info)
Dec 02 11:03:24.728 INFO [stderr] 
Dec 02 11:03:24.728 INFO [stderr] warning: unused `std::result::Result` that must be used
Dec 02 11:03:24.728 INFO [stderr]    --> src/lib.rs:220:2
Dec 02 11:03:24.728 INFO [stderr]     |
Dec 02 11:03:24.728 INFO [stderr] 220 |     writeln!(lock, "#Window\t\tF\t\tF_prev");
Dec 02 11:03:24.728 INFO [stderr]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Dec 02 11:03:24.728 INFO [stderr]     |
Dec 02 11:03:24.728 INFO [stderr]     = note: this `Result` may be an `Err` variant, which should be handled
Dec 02 11:03:24.728 INFO [stderr]     = note: this error originates in a macro outside of the current crate (in Nightly builds, run with -Z external-macro-backtrace for more info)
Dec 02 11:03:24.728 INFO [stderr] 
Dec 02 11:03:24.728 INFO [stderr] warning: unused `std::result::Result` that must be used
Dec 02 11:03:24.728 INFO [stderr]    --> src/lib.rs:222:3
Dec 02 11:03:24.728 INFO [stderr]     |
Dec 02 11:03:24.728 INFO [stderr] 222 |         writeln!(lock, "{}\t{:9.5}\t{:8.8}", window, F[window], (F[window]-F_prev[window]).abs());
Dec 02 11:03:24.728 INFO [stderr]     |         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Dec 02 11:03:24.728 INFO [stderr]     |
Dec 02 11:03:24.728 INFO [stderr]     = note: this `Result` may be an `Err` variant, which should be handled
Dec 02 11:03:24.728 INFO [stderr]     = note: this error originates in a macro outside of the current crate (in Nightly builds, run with -Z external-macro-backtrace for more info)
Dec 02 11:03:24.728 INFO [stderr] 
Dec 02 11:03:30.759 INFO [stderr] error: linking with `cc` failed: exit code: 1
Dec 02 11:03:30.759 INFO [stderr]   |
Dec 02 11:03:30.759 INFO [stderr]   = note: "cc" "-Wl,--as-needed" "-Wl,-z,noexecstack" "-m64" "-L" "/rustup-home/toolchains/8940af3cea4a9a9deabcaf843b2f8cad9a83fc61-alt/lib/rustlib/x86_64-unknown-linux-gnu/lib" "/target/debug/deps/wham-7e2f6962d0947197.wham.avbbemoh-cgu.0.rcgu.o" "/target/debug/deps/wham-7e2f6962d0947197.wham.avbbemoh-cgu.1.rcgu.o" "/target/debug/deps/wham-7e2f6962d0947197.wham.avbbemoh-cgu.10.rcgu.o" "/target/debug/deps/wham-7e2f6962d0947197.wham.avbbemoh-cgu.11.rcgu.o" "/target/debug/deps/wham-7e2f6962d0947197.wham.avbbemoh-cgu.12.rcgu.o" "/target/debug/deps/wham-7e2f6962d0947197.wham.avbbemoh-cgu.13.rcgu.o" "/target/debug/deps/wham-7e2f6962d0947197.wham.avbbemoh-cgu.14.rcgu.o" "/target/debug/deps/wham-7e2f6962d0947197.wham.avbbemoh-cgu.15.rcgu.o" "/target/debug/deps/wham-7e2f6962d0947197.wham.avbbemoh-cgu.2.rcgu.o" "/target/debug/deps/wham-7e2f6962d0947197.wham.avbbemoh-cgu.3.rcgu.o" "/target/debug/deps/wham-7e2f6962d0947197.wham.avbbemoh-cgu.4.rcgu.o" "/target/debug/deps/wham-7e2f6962d0947197.wham.avbbemoh-cgu.5.rcgu.o" "/target/debug/deps/wham-7e2f6962d0947197.wham.avbbemoh-cgu.6.rcgu.o" "/target/debug/deps/wham-7e2f6962d0947197.wham.avbbemoh-cgu.7.rcgu.o" "/target/debug/deps/wham-7e2f6962d0947197.wham.avbbemoh-cgu.8.rcgu.o" "/target/debug/deps/wham-7e2f6962d0947197.wham.avbbemoh-cgu.9.rcgu.o" "-o" "/target/debug/deps/wham-7e2f6962d0947197" "/target/debug/deps/wham-7e2f6962d0947197.57v9j8calmzc2fis.rcgu.o" "-Wl,--gc-sections" "-pie" "-Wl,-zrelro" "-Wl,-znow" "-nodefaultlibs" "-L" "/target/debug/deps" "-L" "/target/debug/build/backtrace-sys-707ae5c3979591c9/out" "-L" "/rustup-home/toolchains/8940af3cea4a9a9deabcaf843b2f8cad9a83fc61-alt/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-Wl,-Bstatic" "/target/debug/deps/libclap-ffbba82d8eef2f02.rlib" "/target/debug/deps/libyaml_rust-077d40987dabf4b6.rlib" "/target/debug/deps/libvec_map-ae6b85b3096f139d.rlib" "/target/debug/deps/libtextwrap-8dab979482b3011f.rlib" "/target/debug/deps/libunicode_width-7b4bf0317f43b202.rlib" "/target/debug/deps/libstrsim-6b68cde1f85e7076.rlib" "/target/debug/deps/libbitflags-e954371487107a49.rlib" "/target/debug/deps/libatty-1cd93dade726c93f.rlib" "/target/debug/deps/libansi_term-428cca67fbc21c00.rlib" "/target/debug/deps/libwham-eaa97fe2a3929425.rlib" "/target/debug/deps/librgsl-0b9b61811604d234.rlib" "/target/debug/deps/libc_vec-7067d1e948ff3b67.rlib" "/target/debug/deps/librand-2bfb2ec176de6cc3.rlib" "/target/debug/deps/librand_core-f0fde17dfa8bcfe7.rlib" "/target/debug/deps/librand_core-732674e20e851a04.rlib" "/target/debug/deps/liberror_chain-1ad67f94d0ff6e02.rlib" "/target/debug/deps/libbacktrace-a0c0cef4f4c2c70d.rlib" "/target/debug/deps/libbacktrace_sys-59a5dbbd5c725ea8.rlib" "/target/debug/deps/librustc_demangle-04cebae3af74788c.rlib" "/target/debug/deps/libcfg_if-95b85ac6ad831bf2.rlib" "/target/debug/deps/liblibc-5cfff340f03156e2.rlib" "-Wl,--start-group" "/rustup-home/toolchains/8940af3cea4a9a9deabcaf843b2f8cad9a83fc61-alt/lib/rustlib/x86_64-unknown-linux-gnu/lib/libstd-223739ea87b9a0b5.rlib" "/rustup-home/toolchains/8940af3cea4a9a9deabcaf843b2f8cad9a83fc61-alt/lib/rustlib/x86_64-unknown-linux-gnu/lib/libpanic_unwind-6ae4dfa984b116fe.rlib" "/rustup-home/toolchains/8940af3cea4a9a9deabcaf843b2f8cad9a83fc61-alt/lib/rustlib/x86_64-unknown-linux-gnu/lib/liballoc_jemalloc-d0de55d071ae212c.rlib" "/rustup-home/toolchains/8940af3cea4a9a9deabcaf843b2f8cad9a83fc61-alt/lib/rustlib/x86_64-unknown-linux-gnu/lib/libunwind-56e6e4959fbf1e49.rlib" "/rustup-home/toolchains/8940af3cea4a9a9deabcaf843b2f8cad9a83fc61-alt/lib/rustlib/x86_64-unknown-linux-gnu/lib/liballoc_system-74e77b0ac85c5e20.rlib" "/rustup-home/toolchains/8940af3cea4a9a9deabcaf843b2f8cad9a83fc61-alt/lib/rustlib/x86_64-unknown-linux-gnu/lib/liblibc-2e7d77edf47b6d69.rlib" "/rustup-home/toolchains/8940af3cea4a9a9deabcaf843b2f8cad9a83fc61-alt/lib/rustlib/x86_64-unknown-linux-gnu/lib/liballoc-c763cb552c7cefdf.rlib" "/rustup-home/toolchains/8940af3cea4a9a9deabcaf843b2f8cad9a83fc61-alt/lib/rustlib/x86_64-unknown-linux-gnu/lib/libcore-5bafd13887121bda.rlib" "-Wl,--end-group" "/rustup-home/toolchains/8940af3cea4a9a9deabcaf843b2f8cad9a83fc61-alt/lib/rustlib/x86_64-unknown-linux-gnu/lib/libcompiler_builtins-97868d8b5036fe99.rlib" "-Wl,-Bdynamic" "-lutil" "-lutil" "-ldl" "-lrt" "-lpthread" "-lpthread" "-lgcc_s" "-lc" "-lm" "-lrt" "-lpthread" "-lutil" "-lutil"
Dec 02 11:03:30.759 INFO [stderr]   = note: /target/debug/deps/librgsl-0b9b61811604d234.rlib(rgsl-0b9b61811604d234.rgsl.30hvo6t8-cgu.6.rcgu.o): In function `rgsl::statistics::sd::h6b04319e2ae2ea04':
Dec 02 11:03:30.759 INFO [stderr]           /cargo-home/registry/src/github.com-1ecc6299db9ec823/GSL-1.0.0/src/statistics.rs:85: undefined reference to `gsl_stats_sd'
Dec 02 11:03:30.759 INFO [stderr]           collect2: error: ld returned 1 exit status
Dec 02 11:03:30.759 INFO [stderr]           
Dec 02 11:03:30.759 INFO [stderr] 
Dec 02 11:03:30.760 INFO [stderr] error: aborting due to previous error
Dec 02 11:03:30.760 INFO [stderr] 
Dec 02 11:03:30.779 INFO [stderr] error: Could not compile `wham`.
Dec 02 11:03:30.780 INFO [stderr] 
Dec 02 11:03:30.780 INFO [stderr] To learn more, run the command again with --verbose.
Dec 02 11:03:30.780 INFO [stderr] su: No module specific data is present
Dec 02 11:03:31.203 INFO running `"docker" "inspect" "4b815f3103577df630b44d90b808250a9fc29c985c35da7df9f6919d6ef5ef19"`
Dec 02 11:03:31.431 INFO running `"docker" "rm" "-f" "4b815f3103577df630b44d90b808250a9fc29c985c35da7df9f6919d6ef5ef19"`
Dec 02 11:03:31.637 INFO [stdout] 4b815f3103577df630b44d90b808250a9fc29c985c35da7df9f6919d6ef5ef19