Nov 03 02:03:07.502 INFO testing bio-0.22.0 against beta-2018-10-30 for beta-1.31-1
Nov 03 02:03:07.502 INFO running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/beta-1.31-1/worker-1/beta-2018-10-30:/target:rw,Z" "-v" "/mnt/big/crater/work/local/test-source/worker-1/beta-1.31-1/beta-2018-10-30:/source:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/source" "-e" "USER_ID=1000" "-e" "CMD=cargo +beta-2018-10-30 build --frozen" "-e" "CARGO_TARGET_DIR=/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/cargo-home" "-e" "RUSTUP_HOME=/rustup-home" "-m" "1536M" "--network" "none" "crater"`
Nov 03 02:03:07.963 INFO blam! 2c516f403130792f9882c2bc18e332454728f8d04fc44b5c0bd70ff335b4abc6
Nov 03 02:03:07.964 INFO running `"docker" "start" "-a" "2c516f403130792f9882c2bc18e332454728f8d04fc44b5c0bd70ff335b4abc6"`
Nov 03 02:03:09.095 INFO kablam! usermod: no changes
Nov 03 02:03:09.334 INFO kablam!    Compiling statrs v0.9.0
Nov 03 02:03:09.335 INFO kablam!    Compiling ndarray v0.9.1
Nov 03 02:03:09.379 INFO kablam!    Compiling vec_map v0.8.1
Nov 03 02:03:09.379 INFO kablam!    Compiling bv v0.7.4
Nov 03 02:03:09.379 INFO kablam!    Compiling csv v1.0.2
Nov 03 02:03:09.379 INFO kablam!    Compiling bio-types v0.4.0
Nov 03 02:03:09.379 INFO kablam!    Compiling multimap v0.4.0
Nov 03 02:03:26.059 INFO kablam!    Compiling bio v0.22.0 (/source)
Nov 03 02:03:29.508 INFO kablam! warning: unused `#[macro_use]` import
Nov 03 02:03:29.508 INFO kablam!    --> src/lib.rs:103:1
Nov 03 02:03:29.508 INFO kablam!     |
Nov 03 02:03:29.508 INFO kablam! 103 | #[macro_use]
Nov 03 02:03:29.508 INFO kablam!     | ^^^^^^^^^^^^
Nov 03 02:03:29.508 INFO kablam!     |
Nov 03 02:03:29.510 INFO kablam!     = note: #[warn(unused_imports)] on by default
Nov 03 02:03:29.510 INFO kablam! 
Nov 03 02:03:29.510 INFO kablam! warning: unused `#[macro_use]` import
Nov 03 02:03:29.510 INFO kablam!    --> src/lib.rs:117:1
Nov 03 02:03:29.510 INFO kablam!     |
Nov 03 02:03:29.510 INFO kablam! 117 | #[macro_use]
Nov 03 02:03:29.510 INFO kablam!     | ^^^^^^^^^^^^
Nov 03 02:03:29.510 INFO kablam! 
Nov 03 02:03:37.967 INFO kablam!     Finished dev [unoptimized + debuginfo] target(s) in 28.83s
Nov 03 02:03:37.968 INFO kablam! su: No module specific data is present
Nov 03 02:03:38.639 INFO running `"docker" "rm" "-f" "2c516f403130792f9882c2bc18e332454728f8d04fc44b5c0bd70ff335b4abc6"`
Nov 03 02:03:38.935 INFO blam! 2c516f403130792f9882c2bc18e332454728f8d04fc44b5c0bd70ff335b4abc6
Nov 03 02:03:38.947 INFO running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/beta-1.31-1/worker-1/beta-2018-10-30:/target:rw,Z" "-v" "/mnt/big/crater/work/local/test-source/worker-1/beta-1.31-1/beta-2018-10-30:/source:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/source" "-e" "USER_ID=1000" "-e" "CMD=cargo +beta-2018-10-30 test --frozen --no-run" "-e" "CARGO_TARGET_DIR=/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/cargo-home" "-e" "RUSTUP_HOME=/rustup-home" "-m" "1536M" "--network" "none" "crater"`
Nov 03 02:03:39.444 INFO blam! 07294c0d5dd63dc05209af35f878818c78624756e1cbecd5659b6d9957a8781b
Nov 03 02:03:39.446 INFO running `"docker" "start" "-a" "07294c0d5dd63dc05209af35f878818c78624756e1cbecd5659b6d9957a8781b"`
Nov 03 02:03:41.247 INFO kablam! usermod: no changes
Nov 03 02:03:41.365 INFO kablam!    Compiling bio v0.22.0 (/source)
Nov 03 02:04:06.779 INFO kablam!     Finished dev [unoptimized + debuginfo] target(s) in 25.51s
Nov 03 02:04:06.786 INFO kablam! su: No module specific data is present
Nov 03 02:04:07.087 INFO running `"docker" "rm" "-f" "07294c0d5dd63dc05209af35f878818c78624756e1cbecd5659b6d9957a8781b"`
Nov 03 02:04:07.286 INFO blam! 07294c0d5dd63dc05209af35f878818c78624756e1cbecd5659b6d9957a8781b
Nov 03 02:04:07.308 INFO running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/beta-1.31-1/worker-1/beta-2018-10-30:/target:rw,Z" "-v" "/mnt/big/crater/work/local/test-source/worker-1/beta-1.31-1/beta-2018-10-30:/source:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/source" "-e" "USER_ID=1000" "-e" "CMD=cargo +beta-2018-10-30 test --frozen" "-e" "CARGO_TARGET_DIR=/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/cargo-home" "-e" "RUSTUP_HOME=/rustup-home" "-m" "1536M" "--network" "none" "crater"`
Nov 03 02:04:07.802 INFO blam! 6bf78e97908cec1a980d80eed68042d4360fc1c6d9ad614bbf3e933037f6c08e
Nov 03 02:04:07.807 INFO running `"docker" "start" "-a" "6bf78e97908cec1a980d80eed68042d4360fc1c6d9ad614bbf3e933037f6c08e"`
Nov 03 02:04:08.683 INFO kablam! usermod: no changes
Nov 03 02:04:08.963 INFO kablam!     Finished dev [unoptimized + debuginfo] target(s) in 0.25s
Nov 03 02:04:08.979 INFO kablam!      Running /target/debug/deps/bio-60f726538ef380b8
Nov 03 02:04:08.981 INFO blam! 
Nov 03 02:04:08.981 INFO blam! running 227 tests
Nov 03 02:04:08.987 INFO blam! test alignment::distance::tests::test_levenshtein_dist ... ok
Nov 03 02:04:08.987 INFO blam! test alignment::pairwise::banded::banded::test_band_add_entry ... ok
Nov 03 02:04:08.987 INFO blam! test alignment::pairwise::banded::banded::test_band_add_kmer ... ok
Nov 03 02:04:08.987 INFO blam! test alignment::pairwise::banded::banded::test_aligner_new ... ok
Nov 03 02:04:09.015 INFO blam! test alignment::pairwise::banded::banded::test_blosum62 ... ok
Nov 03 02:04:09.015 INFO blam! test alignment::distance::tests::test_hamming_dist_good ... ok
Nov 03 02:04:09.019 INFO blam! test alignment::pairwise::banded::banded::test_global_affine_ins ... ok
Nov 03 02:04:09.019 INFO blam! test alignment::pairwise::banded::banded::test_global ... ok
Nov 03 02:04:09.027 INFO blam! test alignment::pairwise::banded::banded::test_global_right_del ... ok
Nov 03 02:04:09.035 INFO blam! test alignment::pairwise::banded::banded::test_global_affine_ins2 ... ok
Nov 03 02:04:09.041 INFO blam! test alignment::pairwise::banded::banded::test_insert_in_between_semiglobal ... ok
Nov 03 02:04:09.059 INFO blam! test alignment::pairwise::banded::banded::test_insert_only_semiglobal ... ok
Nov 03 02:04:09.059 INFO blam! test alignment::pairwise::banded::banded::test_issue11 ... ok
Nov 03 02:04:09.087 INFO blam! test alignment::pairwise::banded::banded::test_issue12_1 ... ok
Nov 03 02:04:09.097 INFO blam! test alignment::pairwise::banded::banded::test_issue12_2 ... ok
Nov 03 02:04:09.107 INFO blam! test alignment::pairwise::banded::banded::test_issue12_3 ... ok
Nov 03 02:04:09.135 INFO blam! test alignment::pairwise::banded::banded::test_band_ends_inside ... ok
Nov 03 02:04:09.135 INFO blam! test alignment::pairwise::banded::banded::test_left_aligned_del ... ok
Nov 03 02:04:09.151 INFO blam! test alignment::pairwise::banded::banded::test_left_aligned_ins ... ok
Nov 03 02:04:09.151 INFO blam! test alignment::pairwise::banded::banded::test_local ... ok
Nov 03 02:04:09.157 INFO blam! test alignment::pairwise::banded::banded::test_band_starts_inside ... ok
Nov 03 02:04:09.157 INFO blam! test alignment::pairwise::banded::banded::test_local_affine_ins2 ... ok
Nov 03 02:04:09.157 INFO blam! test alignment::pairwise::banded::banded::test_local_empty ... ok
Nov 03 02:04:09.175 INFO blam! test alignment::pairwise::banded::banded::test_longer_string_all_operations ... ok
Nov 03 02:04:09.203 INFO blam! test alignment::pairwise::banded::banded::test_deletion ... ok
Nov 03 02:04:09.231 INFO blam! test alignment::distance::tests::test_hamming_dist_bad ... ok
Nov 03 02:04:09.287 INFO blam! test alignment::pairwise::banded::banded::test_overhangs2 ... ok
Nov 03 02:04:09.309 INFO blam! test alignment::pairwise::banded::banded::test_overhangs4 ... ok
Nov 03 02:04:09.309 INFO blam! test alignment::pairwise::banded::banded::test_semiglobal ... ok
Nov 03 02:04:09.309 INFO blam! test alignment::pairwise::banded::banded::test_semiglobal_gap_open_lt_mismatch ... ok
Nov 03 02:04:09.309 INFO blam! test alignment::pairwise::banded::banded::test_overhangs1 ... ok
Nov 03 02:04:09.311 INFO blam! test alignment::pairwise::banded::banded::test_semiglobal_simple ... ok
Nov 03 02:04:09.315 INFO blam! test alignment::pairwise::banded::banded::test_insertion ... ok
Nov 03 02:04:09.315 INFO blam! test alignment::pairwise::banded::banded::test_xclip_prefix_custom ... ok
Nov 03 02:04:09.331 INFO blam! test alignment::pairwise::banded::banded::test_yclip_prefix_custom ... ok
Nov 03 02:04:09.331 INFO blam! test alignment::pairwise::banded::banded::test_yclip_suffix_custom ... ok
Nov 03 02:04:09.331 INFO blam! test alignment::pairwise::banded::banded::test_xclip_suffix_custom ... ok
Nov 03 02:04:09.331 INFO blam! test alignment::pairwise::tests::test_blosum62 ... ok
Nov 03 02:04:09.331 INFO blam! test alignment::pairwise::tests::test_aligner_new ... ok
Nov 03 02:04:09.331 INFO blam! test alignment::pairwise::tests::test_global_affine_ins ... ok
Nov 03 02:04:09.331 INFO blam! test alignment::pairwise::tests::test_global ... ok
Nov 03 02:04:09.331 INFO blam! test alignment::pairwise::tests::test_global_right_del ... ok
Nov 03 02:04:09.331 INFO blam! test alignment::pairwise::banded::banded::test_overhangs5 ... ok
Nov 03 02:04:09.331 INFO blam! test alignment::pairwise::tests::test_global_affine_ins2 ... ok
Nov 03 02:04:09.348 INFO blam! test alignment::pairwise::tests::test_insert_in_between_semiglobal ... ok
Nov 03 02:04:09.348 INFO blam! test alignment::pairwise::tests::test_insert_only_semiglobal ... ok
Nov 03 02:04:09.348 INFO blam! test alignment::pairwise::tests::test_issue11 ... ok
Nov 03 02:04:09.348 INFO blam! test alignment::pairwise::tests::test_issue12_1 ... ok
Nov 03 02:04:09.349 INFO blam! test alignment::pairwise::tests::test_issue12_3 ... ok
Nov 03 02:04:09.355 INFO blam! test alignment::pairwise::tests::test_left_aligned_del ... ok
Nov 03 02:04:09.367 INFO blam! test alignment::pairwise::tests::test_issue12_2 ... ok
Nov 03 02:04:09.375 INFO blam! test alignment::pairwise::tests::test_local ... ok
Nov 03 02:04:09.375 INFO blam! test alignment::pairwise::tests::test_left_aligned_ins ... ok
Nov 03 02:04:09.375 INFO blam! test alignment::pairwise::tests::test_local_affine_ins2 ... ok
Nov 03 02:04:09.383 INFO blam! test alignment::pairwise::banded::banded::test_substitutions ... ok
Nov 03 02:04:09.383 INFO blam! test alignment::pairwise::tests::test_semiglobal ... ok
Nov 03 02:04:09.383 INFO blam! test alignment::pairwise::tests::test_semiglobal_simple ... ok
Nov 03 02:04:09.383 INFO blam! test alignment::pairwise::tests::test_semiglobal_gap_open_lt_mismatch ... ok
Nov 03 02:04:09.383 INFO blam! test alignment::pairwise::tests::test_xclip_prefix_custom ... ok
Nov 03 02:04:09.383 INFO blam! test alignment::pairwise::tests::test_xclip_suffix_custom ... ok
Nov 03 02:04:09.383 INFO blam! test alignment::pairwise::tests::test_yclip_prefix_custom ... ok
Nov 03 02:04:09.383 INFO blam! test alignment::pairwise::tests::test_yclip_suffix_custom ... ok
Nov 03 02:04:09.383 INFO blam! test alignment::pairwise::tests::traceback_cell ... ok
Nov 03 02:04:09.383 INFO blam! test alignment::sparse::sparse_alignment::test_expanded_matches ... ok
Nov 03 02:04:09.383 INFO blam! test alignment::sparse::sparse_alignment::test_find_kmer_matches ... ok
Nov 03 02:04:09.383 INFO blam! test alignment::sparse::sparse_alignment::test_lcskpp0 ... ok
Nov 03 02:04:09.383 INFO blam! test alignment::sparse::sparse_alignment::test_lcskpp1 ... ok
Nov 03 02:04:09.383 INFO blam! test alignment::sparse::sparse_alignment::test_lcskpp2 ... ok
Nov 03 02:04:09.383 INFO blam! test alignment::sparse::sparse_alignment::test_lcskpp_same ... ok
Nov 03 02:04:09.395 INFO blam! test alignment::pairwise::banded::banded::test_overhangs3 ... ok
Nov 03 02:04:09.395 INFO blam! test alignment::pairwise::tests::test_scoring_from_scores ... ok
Nov 03 02:04:09.395 INFO blam! test alignment::pairwise::tests::test_longer_string_all_operations ... ok
Nov 03 02:04:09.395 INFO blam! test alignment::sparse::sparse_alignment::test_sdp ... ok
Nov 03 02:04:09.427 INFO blam! test alignment::sparse::sparse_alignment::test_lcskpp_tandem_repeat ... ok
Nov 03 02:04:09.427 INFO blam! test alignment::sparse::sparse_alignment::test_sdp1 ... ok
Nov 03 02:04:09.427 INFO blam! test alignment::sparse::sparse_alignment::test_sdp2 ... ok
Nov 03 02:04:09.427 INFO blam! test alignment::sparse::sparse_alignment::test_sdpkpp_same ... ok
Nov 03 02:04:09.427 INFO blam! test alignment::pairwise::banded::banded::test_same ... ok
Nov 03 02:04:09.431 INFO blam! test alphabets::protein::tests::symbol_is_no_word ... ok
Nov 03 02:04:09.431 INFO blam! test alphabets::protein::tests::number_is_no_word ... ok
Nov 03 02:04:09.431 INFO blam! test alphabets::protein::tests::is_word ... ok
Nov 03 02:04:09.431 INFO blam! test alphabets::protein::tests::is_no_word ... ok
Nov 03 02:04:09.431 INFO blam! test alphabets::rna::tests::is_no_word ... ok
Nov 03 02:04:09.431 INFO blam! test alphabets::rna::tests::is_word ... ok
Nov 03 02:04:09.431 INFO blam! test alignment::sparse::sparse_alignment::test_sdpkpp_tandem_repeat ... ok
Nov 03 02:04:09.431 INFO blam! test alphabets::rna::tests::symbol_is_no_word ... ok
Nov 03 02:04:09.431 INFO blam! test alphabets::rna::tests::test_reverse_complement ... ok
Nov 03 02:04:09.431 INFO blam! test data_structures::bit_tree::test_bit_tree::test_bit_tree ... ok
Nov 03 02:04:09.431 INFO blam! test data_structures::bitenc::tests::test_bitenc ... ok
Nov 03 02:04:09.431 INFO blam! test data_structures::bwt::tests::test_bwtfind ... ok
Nov 03 02:04:09.431 INFO blam! test data_structures::bwt::tests::test_invert_bwt ... ok
Nov 03 02:04:09.431 INFO blam! test data_structures::bitenc::tests::test_push_values ... ok
Nov 03 02:04:09.431 INFO blam! test alphabets::rna::tests::number_is_no_word ... ok
Nov 03 02:04:09.435 INFO blam! test data_structures::fmindex::tests::test_smems ... ok
Nov 03 02:04:09.435 INFO blam! test data_structures::interval_tree::tests::from_iterator ... ok
Nov 03 02:04:09.435 INFO blam! test data_structures::interval_tree::tests::iter_mut ... ok
Nov 03 02:04:09.443 INFO blam! test data_structures::bitenc::tests::test_issue29 ... ok
Nov 03 02:04:09.443 INFO blam! test data_structures::bwt::tests::test_occ ... ok
Nov 03 02:04:09.443 INFO blam! test data_structures::fmindex::tests::test_init_interval ... ok
Nov 03 02:04:09.443 INFO blam! test data_structures::interval_tree::tests::test_insertion_and_intersection ... ok
Nov 03 02:04:09.443 INFO blam! test data_structures::fmindex::tests::test_fmindex ... ok
Nov 03 02:04:09.443 INFO blam! test data_structures::interval_tree::tests::zero_width_ranges ... ok
Nov 03 02:04:09.443 INFO blam! test data_structures::qgram_index::tests::test_matches ... ok
Nov 03 02:04:09.443 INFO blam! test data_structures::qgram_index::tests::test_qgram_matches ... ok
Nov 03 02:04:09.443 INFO blam! test data_structures::qgram_index::tests::test_exact_matches_self ... ok
Nov 03 02:04:09.443 INFO blam! test data_structures::rank_select::tests::test_single_select ... ok
Nov 03 02:04:09.443 INFO blam! test data_structures::rank_select::tests::test_select ... ok
Nov 03 02:04:09.443 INFO blam! test data_structures::qgram_index::tests::test_exact_matches ... ok
Nov 03 02:04:09.455 INFO blam! test data_structures::suffix_array::tests::test_issue10_1 ... ok
Nov 03 02:04:09.455 INFO blam! test data_structures::suffix_array::tests::test_buckets ... ok
Nov 03 02:04:09.455 INFO blam! test data_structures::suffix_array::tests::test_lms_pos ... ok
Nov 03 02:04:09.455 INFO blam! test data_structures::suffix_array::tests::test_issue10_2 ... ok
Nov 03 02:04:09.463 INFO blam! test data_structures::suffix_array::tests::test_handles_sentinels_properly ... ok
Nov 03 02:04:09.463 INFO blam! test data_structures::suffix_array::tests::test_pos_types ... ok
Nov 03 02:04:09.463 INFO blam! test data_structures::suffix_array::tests::test_pos ... ok
Nov 03 02:04:09.463 INFO blam! test alignment::pairwise::banded::banded::test_band_is_fully_inside ... ok
Nov 03 02:04:09.463 INFO blam! test data_structures::rank_select::tests::test_rank_select ... ok
Nov 03 02:04:09.463 INFO blam! test io::fasta::tests::test_index_sequences ... ok
Nov 03 02:04:09.463 INFO blam! test io::bed::tests::test_writer ... ok
Nov 03 02:04:09.479 INFO blam! test io::bed::tests::test_reader ... ok
Nov 03 02:04:09.479 INFO blam! test io::fasta::tests::test_indexed_reader ... ok
Nov 03 02:04:09.487 INFO blam! test io::fasta::tests::test_indexed_reader_by_rid_all ... ok
Nov 03 02:04:09.487 INFO blam! test io::fasta::tests::test_indexed_reader_crlf ... ok
Nov 03 02:04:09.487 INFO blam! test io::fasta::tests::test_indexed_reader_all ... ok
Nov 03 02:04:09.487 INFO blam! test io::fasta::tests::test_indexed_reader_crlf_all ... ok
Nov 03 02:04:09.487 INFO blam! test io::fasta::tests::test_indexed_reader_bad_reader ... ok
Nov 03 02:04:09.495 INFO blam! test io::fasta::tests::test_indexed_reader_iter_by_rid_all ... ok
Nov 03 02:04:09.499 INFO blam! test io::fasta::tests::test_indexed_reader_crlf_by_rid_all ... ok
Nov 03 02:04:09.499 INFO blam! test io::fasta::tests::test_indexed_reader_iter_all ... ok
Nov 03 02:04:09.499 INFO blam! test io::fasta::tests::test_indexed_reader_iter ... ok
Nov 03 02:04:09.502 INFO blam! test io::fasta::tests::test_indexed_reader_iter_read_fails ... ok
Nov 03 02:04:09.512 INFO blam! test data_structures::suffix_array::tests::test_sorts_lexically ... ok
Nov 03 02:04:09.512 INFO blam! test io::fasta::tests::test_indexed_reader_iter_crlf ... ok
Nov 03 02:04:09.532 INFO blam! test io::fasta::tests::test_indexed_reader_iter_crlf_all ... ok
Nov 03 02:04:09.532 INFO blam! test io::fasta::tests::test_indexed_reader_iter_crlf_by_rid_all ... ok
Nov 03 02:04:09.532 INFO blam! test io::fasta::tests::test_indexed_reader_iter_size_hint ... ok
Nov 03 02:04:09.532 INFO blam! test io::fasta::tests::test_indexed_reader_iter_seek_fails ... ok
Nov 03 02:04:09.543 INFO blam! test io::fasta::tests::test_indexed_reader_no_fetch_read_iter_fails ... ok
Nov 03 02:04:09.543 INFO blam! test io::fasta::tests::test_indexed_reader_no_trailing_lf ... ok
Nov 03 02:04:09.543 INFO blam! test io::fasta::tests::test_indexed_reader_read_read_fails ... ok
Nov 03 02:04:09.543 INFO blam! test io::fasta::tests::test_indexed_reader_read_seek_fails ... ok
Nov 03 02:04:09.543 INFO blam! test io::fasta::tests::test_indexed_reader_no_fetch_read_fails ... ok
Nov 03 02:04:09.543 INFO blam! test io::fasta::tests::test_indexed_reader_reused_buffer ... ok
Nov 03 02:04:09.543 INFO blam! test io::fasta::tests::test_reader ... ok
Nov 03 02:04:09.543 INFO blam! test io::fasta::tests::test_reader_no_id ... ok
Nov 03 02:04:09.543 INFO blam! test io::fasta::tests::test_reader_read_fails ... ok
Nov 03 02:04:09.543 INFO blam! test io::fasta::tests::test_record_with_attrs ... ok
Nov 03 02:04:09.543 INFO blam! test io::fasta::tests::test_reader_wrong_header ... ok
Nov 03 02:04:09.543 INFO blam! test io::fasta::tests::test_reader_read_fails_iter ... ok
Nov 03 02:04:09.543 INFO blam! test io::fasta::tests::test_writer ... ok
Nov 03 02:04:09.543 INFO blam! test io::fastq::tests::test_reader ... ok
Nov 03 02:04:09.543 INFO blam! test io::fastq::tests::test_record_with_attrs ... ok
Nov 03 02:04:09.543 INFO blam! test io::fastq::tests::test_writer ... ok
Nov 03 02:04:09.543 INFO blam! test io::fasta::tests::test_reader_non_ascii_sequence ... ok
Nov 03 02:04:09.561 INFO blam! test io::gff::tests::test_convert_gtf2_to_gff3 ... ok
Nov 03 02:04:09.561 INFO blam! test io::gff::tests::test_reader_gtf2_2 ... ok
Nov 03 02:04:09.561 INFO blam! test io::gff::tests::test_reader_gtf2 ... ok
Nov 03 02:04:09.583 INFO blam! test io::gff::tests::test_writer_gtf2 ... ok
Nov 03 02:04:09.583 INFO blam! test io::gff::tests::test_reader_gff3 ... ok
Nov 03 02:04:09.583 INFO blam! test io::gff::tests::test_writer_gff3 ... ok
Nov 03 02:04:09.583 INFO blam! test pattern_matching::bndm::tests::test_find_all ... ok
Nov 03 02:04:09.583 INFO blam! test pattern_matching::horspool::tests::test_shift ... ok
Nov 03 02:04:09.583 INFO blam! test pattern_matching::horspool::tests::test_find_all ... ok
Nov 03 02:04:09.583 INFO blam! test pattern_matching::bom::tests::test_find_all ... ok
Nov 03 02:04:09.583 INFO blam! test pattern_matching::bom::tests::test_delta ... ok
Nov 03 02:04:09.583 INFO blam! test pattern_matching::kmp::tests::test_delta ... ok
Nov 03 02:04:09.583 INFO blam! test pattern_matching::kmp::tests::test_find_all ... ok
Nov 03 02:04:09.583 INFO blam! test pattern_matching::kmp::tests::test_find_all_at_start ... ok
Nov 03 02:04:09.583 INFO blam! test pattern_matching::kmp::tests::test_lps ... ok
Nov 03 02:04:09.583 INFO blam! test pattern_matching::myers::tests::test_distance ... ok
Nov 03 02:04:09.583 INFO blam! test pattern_matching::myers::tests::test_find_all_end ... ok
Nov 03 02:04:09.583 INFO blam! test pattern_matching::myers::tests::test_long ... ok
Nov 03 02:04:09.583 INFO blam! test pattern_matching::pssm::dnamotif::tests::find_motif ... ok
Nov 03 02:04:09.583 INFO blam! test pattern_matching::pssm::dnamotif::tests::simple_pssm ... ok
Nov 03 02:04:09.583 INFO blam! test pattern_matching::pssm::dnamotif::tests::test_inconsist_err ... ok
Nov 03 02:04:09.583 INFO blam! test pattern_matching::pssm::dnamotif::tests::test_info_content ... ok
Nov 03 02:04:09.583 INFO blam! test pattern_matching::pssm::dnamotif::tests::test_mono_err ... ok
Nov 03 02:04:09.583 INFO blam! test pattern_matching::pssm::protmotif::tests::test_inconsist_err ... ok
Nov 03 02:04:09.583 INFO blam! test pattern_matching::pssm::protmotif::tests::test_info_content ... ok
Nov 03 02:04:09.583 INFO blam! test pattern_matching::pssm::protmotif::tests::test_mono_err ... ok
Nov 03 02:04:09.583 INFO blam! test pattern_matching::pssm::protmotif::tests::test_scoring ... ok
Nov 03 02:04:09.583 INFO blam! test pattern_matching::shift_and::tests::test_find_all ... ok
Nov 03 02:04:09.583 INFO blam! test pattern_matching::ukkonen::tests::test_find_all_end ... ok
Nov 03 02:04:09.583 INFO blam! test pattern_matching::ukkonen::tests::test_find_start ... ok
Nov 03 02:04:09.583 INFO blam! test scores::blosum62::tests::test_blosum62 ... ok
Nov 03 02:04:09.583 INFO blam! test scores::pam120::tests::test_pam120 ... ok
Nov 03 02:04:09.583 INFO blam! test scores::pam200::tests::test_pam200 ... ok
Nov 03 02:04:09.583 INFO blam! test scores::pam250::tests::test_pam250 ... ok
Nov 03 02:04:09.583 INFO blam! test scores::pam40::tests::test_pam40 ... ok
Nov 03 02:04:09.583 INFO blam! test seq_analysis::orf::tests::test_orf ... ok
Nov 03 02:04:09.583 INFO blam! test stats::bayesian::tests::test_expected_fdr ... ok
Nov 03 02:04:09.583 INFO blam! test stats::combinatorics::tests::test_comb ... ok
Nov 03 02:04:09.587 INFO blam! test stats::combinatorics::tests::test_comb_scaled ... ok
Nov 03 02:04:09.587 INFO blam! test stats::hmm::tests::test_discrete_forward_toy_example ... ok
Nov 03 02:04:09.587 INFO blam! test stats::hmm::tests::test_discrete_backward_toy_example ... ok
Nov 03 02:04:09.587 INFO blam! test stats::hmm::tests::test_gaussian_backward_simple_example ... ok
Nov 03 02:04:09.587 INFO blam! test stats::hmm::tests::test_gaussian_forward_equals_backward_simple_example ... ok
Nov 03 02:04:09.587 INFO blam! test stats::hmm::tests::test_gaussian_forward_simple_example ... ok
Nov 03 02:04:09.587 INFO blam! test stats::hmm::tests::test_gaussian_viterbi_simple_example ... ok
Nov 03 02:04:09.599 INFO blam! test stats::pairhmm::tests::test_deletion ... ok
Nov 03 02:04:09.599 INFO blam! test stats::pairhmm::tests::test_insertion ... ok
Nov 03 02:04:09.599 INFO blam! test stats::pairhmm::tests::test_mismatch ... ok
Nov 03 02:04:09.599 INFO blam! test stats::pairhmm::tests::test_same ... ok
Nov 03 02:04:09.631 INFO blam! test io::gff::tests::test_reader_gtf2_dup_attr_keys ... ok
Nov 03 02:04:09.631 INFO blam! test data_structures::fmindex::tests::test_issue39 ... ok
Nov 03 02:04:09.631 INFO blam! test stats::probs::cdf::test::test_cdf ... ok
Nov 03 02:04:09.631 INFO blam! test stats::probs::tests::test_cap_numerical_overshoot ... ok
Nov 03 02:04:09.631 INFO blam! test stats::hmm::tests::test_discrete_viterbi_toy_example ... ok
Nov 03 02:04:09.631 INFO blam! test data_structures::interval_tree::tests::test_insertion_and_intersection_2 ... ok
Nov 03 02:04:09.631 INFO blam! test stats::probs::tests::test_cumsum ... ok
Nov 03 02:04:09.631 INFO blam! test stats::probs::tests::test_empty_sum ... ok
Nov 03 02:04:09.643 INFO blam! test stats::probs::tests::test_cap_numerical_overshoot_panic ... ok
Nov 03 02:04:09.643 INFO blam! test stats::probs::tests::test_sum_one_zero ... ok
Nov 03 02:04:09.643 INFO blam! test stats::probs::tests::test_one_minus ... ok
Nov 03 02:04:09.643 INFO blam! test stats::probs::tests::test_simpsons_integrate ... ok
Nov 03 02:04:09.643 INFO blam! test stats::probs::tests::test_sum ... ok
Nov 03 02:04:09.643 INFO blam! test stats::probs::tests::test_sub ... ok
Nov 03 02:04:09.643 INFO blam! test stats::probs::tests::test_trapezoidal_integrate ... ok
Nov 03 02:04:09.643 INFO blam! test utils::tests::test_strand ... ok
Nov 03 02:04:09.643 INFO blam! test utils::text::tests::test_print_sequence ... ok
Nov 03 02:04:09.647 INFO blam! test stats::probs::tests::test_zero ... ok
Nov 03 02:04:09.647 INFO blam! test utils::tests::test_scan ... ok
Nov 03 02:04:09.647 INFO blam! test utils::interval::tests::range_interval_conversions ... ok
Nov 03 02:04:09.647 INFO blam! test utils::tests::test_prescan ... ok
Nov 03 02:04:09.683 INFO blam! test utils::interval::tests::negative_width_range ... ok
Nov 03 02:04:09.736 INFO blam! test alignment::pairwise::banded::banded::test_big ... ok
Nov 03 02:04:09.783 INFO blam! test stats::hmm::tests::test_discrete_forward_equals_backward_toy_example ... ok
Nov 03 02:04:09.783 INFO blam! 
Nov 03 02:04:09.783 INFO blam! test result: ok. 227 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
Nov 03 02:04:09.783 INFO blam! 
Nov 03 02:04:09.787 INFO kablam!    Doc-tests bio
Nov 03 02:04:15.230 INFO blam! 
Nov 03 02:04:15.230 INFO blam! running 42 tests
Nov 03 02:05:03.675 INFO blam! test <::custom_derive::custom_derive macros> - stats::probs::Prob (line 46) ... ok
Nov 03 02:05:03.971 INFO blam! test src/alignment/distance.rs - alignment::distance::levenshtein (line 48) ... ok
Nov 03 02:05:04.195 INFO blam! test <::custom_derive::custom_derive macros> - stats::probs::LogProb (line 46) ... ok
Nov 03 02:05:06.195 INFO blam! test <::custom_derive::custom_derive macros> - stats::probs::PHREDProb (line 46) ... ok
Nov 03 02:05:08.499 INFO blam! test src/alignment/distance.rs - alignment::distance::hamming (line 16) ... ok
Nov 03 02:05:10.907 INFO blam! test src/alignment/pairwise/banded.rs - alignment::pairwise::banded (line 20) ... ok
Nov 03 02:05:11.743 INFO blam! test src/alignment/pairwise/mod.rs - alignment::pairwise (line 13) ... ok
Nov 03 02:05:11.771 INFO blam! test src/alignment/sparse.rs - alignment::sparse (line 18) ... ok
Nov 03 02:05:42.842 INFO blam! test src/data_structures/bit_tree.rs - data_structures::bit_tree (line 12) ... ok
Nov 03 02:05:45.995 INFO blam! test src/alphabets/protein.rs - alphabets::protein (line 10) ... ok
Nov 03 02:05:47.409 INFO blam! test src/alphabets/mod.rs - alphabets (line 10) ... ok
Nov 03 02:05:50.091 INFO blam! test src/alphabets/dna.rs - alphabets::dna (line 10) ... ok
Nov 03 02:05:52.335 INFO blam! test src/alphabets/rna.rs - alphabets::rna (line 10) ... ok
Nov 03 02:05:53.219 INFO blam! test src/data_structures/bitenc.rs - data_structures::bitenc (line 11) ... ok
Nov 03 02:05:55.971 INFO blam! test src/data_structures/fmindex.rs - data_structures::fmindex (line 12) ... ok
Nov 03 02:05:58.423 INFO blam! test src/data_structures/bwt.rs - data_structures::bwt::bwt (line 42) ... ok
Nov 03 02:06:26.731 INFO blam! test src/data_structures/fmindex.rs - data_structures::fmindex (line 34) ... ok
Nov 03 02:06:34.763 INFO blam! test src/data_structures/qgram_index.rs - data_structures::qgram_index (line 10) ... ok
Nov 03 02:06:35.831 INFO blam! test src/data_structures/interval_tree.rs - data_structures::interval_tree (line 14) ... ok
Nov 03 02:06:37.347 INFO blam! test src/data_structures/fmindex.rs - data_structures::fmindex::FMIndexable::backward_search (line 98) ... ok
Nov 03 02:06:39.779 INFO blam! test src/data_structures/smallints.rs - data_structures::smallints (line 13) ... ok
Nov 03 02:06:39.815 INFO blam! test src/data_structures/fmindex.rs - data_structures::fmindex::FMDIndex<DBWT, DLess, DOcc>::smems (line 266) ... ok
Nov 03 02:06:40.379 INFO blam! test src/data_structures/rank_select.rs - data_structures::rank_select (line 11) ... ok
Nov 03 02:06:43.022 INFO blam! test src/data_structures/suffix_array.rs - data_structures::suffix_array::lcp (line 239) ... ok
Nov 03 02:07:01.794 INFO blam! test src/data_structures/suffix_array.rs - data_structures::suffix_array::shortest_unique_substrings (line 304) ... ok
Nov 03 02:07:03.257 INFO blam! test src/io/fasta.rs - io::fasta (line 10) ... ok
Nov 03 02:07:10.791 INFO blam! test src/io/fastq.rs - io::fastq (line 10) ... ok
Nov 03 02:07:12.643 INFO blam! test src/io/bed.rs - io::bed (line 10) ... ok
Nov 03 02:07:14.091 INFO blam! test src/data_structures/suffix_array.rs - data_structures::suffix_array::suffix_array (line 198) ... ok
Nov 03 02:07:17.552 INFO blam! test src/io/gff.rs - io::gff (line 14) ... ok
Nov 03 02:07:18.115 INFO blam! test src/lib.rs -  (line 54) ... ok
Nov 03 02:07:18.455 INFO blam! test src/lib.rs -  (line 31) ... ok
Nov 03 02:07:36.212 INFO blam! test src/pattern_matching/bndm.rs - pattern_matching::bndm (line 12) ... ok
Nov 03 02:07:39.690 INFO blam! test src/pattern_matching/bom.rs - pattern_matching::bom (line 12) ... ok
Nov 03 02:07:41.891 INFO blam! test src/pattern_matching/myers.rs - pattern_matching::myers (line 13) ... ok
Nov 03 02:07:43.379 INFO blam! test src/pattern_matching/kmp.rs - pattern_matching::kmp (line 16) ... ok
Nov 03 02:07:44.007 INFO blam! test src/pattern_matching/horspool.rs - pattern_matching::horspool (line 32) ... ok
Nov 03 02:07:47.975 INFO blam! test src/pattern_matching/shift_and.rs - pattern_matching::shift_and (line 12) ... ok
Nov 03 02:07:48.449 INFO blam! test src/seq_analysis/orf.rs - seq_analysis::orf (line 12) ... ok
Nov 03 02:07:50.420 INFO blam! test src/pattern_matching/ukkonen.rs - pattern_matching::ukkonen (line 17) ... ok
Nov 03 02:07:58.515 INFO blam! test src/stats/hmm.rs - stats::hmm (line 15) ... ok
Nov 03 02:07:59.636 INFO blam! test src/stats/hmm.rs - stats::hmm (line 37) ... ok
Nov 03 02:07:59.636 INFO blam! 
Nov 03 02:07:59.637 INFO blam! test result: ok. 42 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
Nov 03 02:07:59.637 INFO blam! 
Nov 03 02:07:59.673 INFO kablam! su: No module specific data is present
Nov 03 02:08:00.795 INFO running `"docker" "rm" "-f" "6bf78e97908cec1a980d80eed68042d4360fc1c6d9ad614bbf3e933037f6c08e"`
Nov 03 02:08:01.159 INFO blam! 6bf78e97908cec1a980d80eed68042d4360fc1c6d9ad614bbf3e933037f6c08e
