Nov 02 15:56:32.886 INFO testing heme-0.3.1 against beta-2018-10-30 for beta-1.31-1
Nov 02 15:56:32.888 INFO running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/beta-1.31-1/worker-3/beta-2018-10-30:/target:rw,Z" "-v" "/mnt/big/crater/work/local/test-source/worker-3/beta-1.31-1/beta-2018-10-30:/source:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/source" "-e" "USER_ID=1000" "-e" "CMD=cargo +beta-2018-10-30 build --frozen" "-e" "CARGO_TARGET_DIR=/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/cargo-home" "-e" "RUSTUP_HOME=/rustup-home" "-m" "1536M" "--network" "none" "crater"`
Nov 02 15:56:33.261 INFO blam! 6215665737b847b0447136444ccfc436a7d62f412945b1f949f2a9206ba37060
Nov 02 15:56:33.264 INFO running `"docker" "start" "-a" "6215665737b847b0447136444ccfc436a7d62f412945b1f949f2a9206ba37060"`
Nov 02 15:56:34.855 INFO kablam! usermod: no changes
Nov 02 15:56:34.912 INFO kablam!    Compiling heme v0.3.1 (/source)
Nov 02 15:56:35.503 INFO kablam! warning: unused import: `std::collections::HashMap`
Nov 02 15:56:35.503 INFO kablam!  --> src/sampling.rs:1:5
Nov 02 15:56:35.504 INFO kablam!   |
Nov 02 15:56:35.504 INFO kablam! 1 | use std::collections::HashMap; 
Nov 02 15:56:35.504 INFO kablam!   |     ^^^^^^^^^^^^^^^^^^^^^^^^^
Nov 02 15:56:35.505 INFO kablam!   |
Nov 02 15:56:35.505 INFO kablam!   = note: #[warn(unused_imports)] on by default
Nov 02 15:56:35.505 INFO kablam! 
Nov 02 15:56:35.569 INFO kablam! warning: unused variable: `protocol_name`
Nov 02 15:56:35.570 INFO kablam!   --> src/sampling.rs:20:21
Nov 02 15:56:35.570 INFO kablam!    |
Nov 02 15:56:35.570 INFO kablam! 20 | pub fn get_protocol(protocol_name: &str) -> Protocol {
Nov 02 15:56:35.571 INFO kablam!    |                     ^^^^^^^^^^^^^ help: consider using `_protocol_name` instead
Nov 02 15:56:35.571 INFO kablam!    |
Nov 02 15:56:35.571 INFO kablam!    = note: #[warn(unused_variables)] on by default
Nov 02 15:56:35.571 INFO kablam! 
Nov 02 15:56:35.572 INFO kablam! warning: unused variable: `a1`
Nov 02 15:56:35.572 INFO kablam!   --> src/scoring.rs:24:39
Nov 02 15:56:35.572 INFO kablam!    |
Nov 02 15:56:35.573 INFO kablam! 24 | pub fn calculate_lennard_jones_energy(a1: &Atom, a2: &Atom, r: f64) -> f64 {
Nov 02 15:56:35.573 INFO kablam!    |                                       ^^ help: consider using `_a1` instead
Nov 02 15:56:35.573 INFO kablam! 
Nov 02 15:56:35.573 INFO kablam! warning: unused variable: `a2`
Nov 02 15:56:35.574 INFO kablam!   --> src/scoring.rs:24:50
Nov 02 15:56:35.574 INFO kablam!    |
Nov 02 15:56:35.574 INFO kablam! 24 | pub fn calculate_lennard_jones_energy(a1: &Atom, a2: &Atom, r: f64) -> f64 {
Nov 02 15:56:35.575 INFO kablam!    |                                                  ^^ help: consider using `_a2` instead
Nov 02 15:56:35.575 INFO kablam! 
Nov 02 15:56:35.587 INFO kablam! warning: field is never used: `atoms`
Nov 02 15:56:35.588 INFO kablam!   --> src/conformation.rs:52:5
Nov 02 15:56:35.588 INFO kablam!    |
Nov 02 15:56:35.588 INFO kablam! 52 |     atoms: Vec<Atom>,
Nov 02 15:56:35.588 INFO kablam!    |     ^^^^^^^^^^^^^^^^
Nov 02 15:56:35.589 INFO kablam!    |
Nov 02 15:56:35.589 INFO kablam!    = note: #[warn(dead_code)] on by default
Nov 02 15:56:35.589 INFO kablam! 
Nov 02 15:56:35.590 INFO kablam! warning: field is never used: `residue_name`
Nov 02 15:56:35.590 INFO kablam!   --> src/conformation.rs:53:5
Nov 02 15:56:35.590 INFO kablam!    |
Nov 02 15:56:35.590 INFO kablam! 53 |     residue_name: String,
Nov 02 15:56:35.591 INFO kablam!    |     ^^^^^^^^^^^^^^^^^^^^
Nov 02 15:56:35.591 INFO kablam! 
Nov 02 15:56:35.591 INFO kablam! warning: field is never used: `residue_index`
Nov 02 15:56:35.592 INFO kablam!   --> src/conformation.rs:54:5
Nov 02 15:56:35.592 INFO kablam!    |
Nov 02 15:56:35.592 INFO kablam! 54 |     residue_index: i32,
Nov 02 15:56:35.592 INFO kablam!    |     ^^^^^^^^^^^^^^^^^^
Nov 02 15:56:35.593 INFO kablam! 
Nov 02 15:56:37.263 INFO kablam!     Finished dev [unoptimized + debuginfo] target(s) in 2.38s
Nov 02 15:56:37.266 INFO kablam! su: No module specific data is present
Nov 02 15:56:37.989 INFO running `"docker" "rm" "-f" "6215665737b847b0447136444ccfc436a7d62f412945b1f949f2a9206ba37060"`
Nov 02 15:56:38.171 INFO blam! 6215665737b847b0447136444ccfc436a7d62f412945b1f949f2a9206ba37060
Nov 02 15:56:38.179 INFO running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/beta-1.31-1/worker-3/beta-2018-10-30:/target:rw,Z" "-v" "/mnt/big/crater/work/local/test-source/worker-3/beta-1.31-1/beta-2018-10-30:/source:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/source" "-e" "USER_ID=1000" "-e" "CMD=cargo +beta-2018-10-30 test --frozen --no-run" "-e" "CARGO_TARGET_DIR=/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/cargo-home" "-e" "RUSTUP_HOME=/rustup-home" "-m" "1536M" "--network" "none" "crater"`
Nov 02 15:56:38.599 INFO blam! 6f9a0f669cdc6d0ab7ee8c2296949d30210817e6833aa66d45be5c90625de2c6
Nov 02 15:56:38.602 INFO running `"docker" "start" "-a" "6f9a0f669cdc6d0ab7ee8c2296949d30210817e6833aa66d45be5c90625de2c6"`
Nov 02 15:56:38.968 INFO kablam! usermod: no changes
Nov 02 15:56:38.993 INFO kablam!    Compiling heme v0.3.1 (/source)
Nov 02 15:56:39.468 INFO kablam! warning: unused import: `std::collections::HashMap`
Nov 02 15:56:39.468 INFO kablam!  --> src/sampling.rs:1:5
Nov 02 15:56:39.468 INFO kablam!   |
Nov 02 15:56:39.468 INFO kablam! 1 | use std::collections::HashMap; 
Nov 02 15:56:39.468 INFO kablam!   |     ^^^^^^^^^^^^^^^^^^^^^^^^^
Nov 02 15:56:39.468 INFO kablam!   |
Nov 02 15:56:39.468 INFO kablam!   = note: #[warn(unused_imports)] on by default
Nov 02 15:56:39.468 INFO kablam! 
Nov 02 15:56:39.520 INFO kablam! warning: unused variable: `protocol_name`
Nov 02 15:56:39.520 INFO kablam!   --> src/sampling.rs:20:21
Nov 02 15:56:39.520 INFO kablam!    |
Nov 02 15:56:39.520 INFO kablam! 20 | pub fn get_protocol(protocol_name: &str) -> Protocol {
Nov 02 15:56:39.520 INFO kablam!    |                     ^^^^^^^^^^^^^ help: consider using `_protocol_name` instead
Nov 02 15:56:39.520 INFO kablam!    |
Nov 02 15:56:39.520 INFO kablam!    = note: #[warn(unused_variables)] on by default
Nov 02 15:56:39.520 INFO kablam! 
Nov 02 15:56:39.520 INFO kablam! warning: unused variable: `a1`
Nov 02 15:56:39.520 INFO kablam!   --> src/scoring.rs:24:39
Nov 02 15:56:39.520 INFO kablam!    |
Nov 02 15:56:39.520 INFO kablam! 24 | pub fn calculate_lennard_jones_energy(a1: &Atom, a2: &Atom, r: f64) -> f64 {
Nov 02 15:56:39.520 INFO kablam!    |                                       ^^ help: consider using `_a1` instead
Nov 02 15:56:39.520 INFO kablam! 
Nov 02 15:56:39.523 INFO kablam! warning: unused variable: `a2`
Nov 02 15:56:39.523 INFO kablam!   --> src/scoring.rs:24:50
Nov 02 15:56:39.523 INFO kablam!    |
Nov 02 15:56:39.523 INFO kablam! 24 | pub fn calculate_lennard_jones_energy(a1: &Atom, a2: &Atom, r: f64) -> f64 {
Nov 02 15:56:39.523 INFO kablam!    |                                                  ^^ help: consider using `_a2` instead
Nov 02 15:56:39.523 INFO kablam! 
Nov 02 15:56:39.542 INFO kablam! warning: field is never used: `atoms`
Nov 02 15:56:39.542 INFO kablam!   --> src/conformation.rs:52:5
Nov 02 15:56:39.542 INFO kablam!    |
Nov 02 15:56:39.542 INFO kablam! 52 |     atoms: Vec<Atom>,
Nov 02 15:56:39.542 INFO kablam!    |     ^^^^^^^^^^^^^^^^
Nov 02 15:56:39.542 INFO kablam!    |
Nov 02 15:56:39.542 INFO kablam!    = note: #[warn(dead_code)] on by default
Nov 02 15:56:39.542 INFO kablam! 
Nov 02 15:56:39.542 INFO kablam! warning: field is never used: `residue_name`
Nov 02 15:56:39.542 INFO kablam!   --> src/conformation.rs:53:5
Nov 02 15:56:39.542 INFO kablam!    |
Nov 02 15:56:39.542 INFO kablam! 53 |     residue_name: String,
Nov 02 15:56:39.542 INFO kablam!    |     ^^^^^^^^^^^^^^^^^^^^
Nov 02 15:56:39.542 INFO kablam! 
Nov 02 15:56:39.542 INFO kablam! warning: field is never used: `residue_index`
Nov 02 15:56:39.542 INFO kablam!   --> src/conformation.rs:54:5
Nov 02 15:56:39.542 INFO kablam!    |
Nov 02 15:56:39.542 INFO kablam! 54 |     residue_index: i32,
Nov 02 15:56:39.542 INFO kablam!    |     ^^^^^^^^^^^^^^^^^^
Nov 02 15:56:39.542 INFO kablam! 
Nov 02 15:56:39.551 INFO kablam! warning: function `H` should have a snake case name such as `h`
Nov 02 15:56:39.551 INFO kablam!    --> src/io.rs:152:9
Nov 02 15:56:39.551 INFO kablam!     |
Nov 02 15:56:39.551 INFO kablam! 152 | /         fn H(l: &f64) -> f64 {
Nov 02 15:56:39.551 INFO kablam! 153 | |
Nov 02 15:56:39.551 INFO kablam! 154 | |             // bounds of N choose lN
Nov 02 15:56:39.551 INFO kablam! 155 | |             // can be found by 2^(n*H(l))
Nov 02 15:56:39.551 INFO kablam! ...   |
Nov 02 15:56:39.551 INFO kablam! 161 | |             l.ln() - value * value.ln()
Nov 02 15:56:39.551 INFO kablam! 162 | |         }
Nov 02 15:56:39.551 INFO kablam!     | |_________^
Nov 02 15:56:39.551 INFO kablam!     |
Nov 02 15:56:39.551 INFO kablam!     = note: #[warn(non_snake_case)] on by default
Nov 02 15:56:39.551 INFO kablam! 
Nov 02 15:56:40.053 INFO kablam!     Finished dev [unoptimized + debuginfo] target(s) in 1.07s
Nov 02 15:56:40.055 INFO kablam! su: No module specific data is present
Nov 02 15:56:40.460 INFO running `"docker" "rm" "-f" "6f9a0f669cdc6d0ab7ee8c2296949d30210817e6833aa66d45be5c90625de2c6"`
Nov 02 15:56:40.593 INFO blam! 6f9a0f669cdc6d0ab7ee8c2296949d30210817e6833aa66d45be5c90625de2c6
Nov 02 15:56:40.595 INFO running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/beta-1.31-1/worker-3/beta-2018-10-30:/target:rw,Z" "-v" "/mnt/big/crater/work/local/test-source/worker-3/beta-1.31-1/beta-2018-10-30:/source:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/source" "-e" "USER_ID=1000" "-e" "CMD=cargo +beta-2018-10-30 test --frozen" "-e" "CARGO_TARGET_DIR=/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/cargo-home" "-e" "RUSTUP_HOME=/rustup-home" "-m" "1536M" "--network" "none" "crater"`
Nov 02 15:56:40.780 INFO blam! 2146d80432762e3d118cbe5c457deffa195f2a6bbc57a63e88a4281c1c1dfeb3
Nov 02 15:56:40.780 INFO running `"docker" "start" "-a" "2146d80432762e3d118cbe5c457deffa195f2a6bbc57a63e88a4281c1c1dfeb3"`
Nov 02 15:56:41.139 INFO kablam! usermod: no changes
Nov 02 15:56:41.166 INFO kablam!     Finished dev [unoptimized + debuginfo] target(s) in 0.01s
Nov 02 15:56:41.166 INFO kablam!      Running /target/debug/deps/heme-95646e5d0d6bf469
Nov 02 15:56:41.168 INFO blam! 
Nov 02 15:56:41.168 INFO blam! running 4 tests
Nov 02 15:56:41.168 INFO blam! test io::tests::test_pdb_parsing ... ok
Nov 02 15:56:41.168 INFO blam! test io::tests::test_lennard_jones_atom_loading ... ok
Nov 02 15:56:41.170 INFO blam! test io::tests::test_new_atoms_testy ... ok
Nov 02 15:56:41.171 INFO kablam!      Running /target/debug/deps/heme-4716bdac9f055968
Nov 02 15:56:41.171 INFO blam! test io::tests::test_entropy_function ... ok
Nov 02 15:56:41.171 INFO blam! 
Nov 02 15:56:41.171 INFO blam! test result: ok. 4 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
Nov 02 15:56:41.171 INFO blam! 
Nov 02 15:56:41.172 INFO kablam!    Doc-tests heme
Nov 02 15:56:41.173 INFO blam! 
Nov 02 15:56:41.173 INFO blam! running 0 tests
Nov 02 15:56:41.173 INFO blam! 
Nov 02 15:56:41.173 INFO blam! test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
Nov 02 15:56:41.173 INFO blam! 
Nov 02 15:56:42.104 INFO blam! 
Nov 02 15:56:42.104 INFO blam! running 1 test
Nov 02 15:56:43.241 INFO blam! test src/conformation.rs - conformation::XYZ (line 18) ... ok
Nov 02 15:56:43.241 INFO blam! 
Nov 02 15:56:43.241 INFO blam! test result: ok. 1 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
Nov 02 15:56:43.241 INFO blam! 
Nov 02 15:56:43.248 INFO kablam! su: No module specific data is present
Nov 02 15:56:43.474 INFO running `"docker" "rm" "-f" "2146d80432762e3d118cbe5c457deffa195f2a6bbc57a63e88a4281c1c1dfeb3"`
Nov 02 15:56:43.537 INFO blam! 2146d80432762e3d118cbe5c457deffa195f2a6bbc57a63e88a4281c1c1dfeb3
