Nov 02 15:56:35.039 INFO testing heme-0.3.1 against 1.30.0 for beta-1.31-1
Nov 02 15:56:35.041 INFO running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/beta-1.31-1/worker-2/1.30.0:/target:rw,Z" "-v" "/mnt/big/crater/work/local/test-source/worker-2/beta-1.31-1/1.30.0:/source:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/source" "-e" "USER_ID=1000" "-e" "CMD=cargo +1.30.0 build --frozen" "-e" "CARGO_TARGET_DIR=/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/cargo-home" "-e" "RUSTUP_HOME=/rustup-home" "-m" "1536M" "--network" "none" "crater"`
Nov 02 15:56:35.402 INFO blam! b09f97dffe792ff6d986ffbf3692f53553a0ecb2256ab5d809c05a3248f2a832
Nov 02 15:56:35.404 INFO running `"docker" "start" "-a" "b09f97dffe792ff6d986ffbf3692f53553a0ecb2256ab5d809c05a3248f2a832"`
Nov 02 15:56:37.422 INFO kablam! usermod: no changes
Nov 02 15:56:37.487 INFO kablam!    Compiling heme v0.3.1 (/source)
Nov 02 15:56:38.127 INFO kablam! warning: unused import: `std::collections::HashMap`
Nov 02 15:56:38.127 INFO kablam!  --> src/sampling.rs:1:5
Nov 02 15:56:38.127 INFO kablam!   |
Nov 02 15:56:38.127 INFO kablam! 1 | use std::collections::HashMap; 
Nov 02 15:56:38.127 INFO kablam!   |     ^^^^^^^^^^^^^^^^^^^^^^^^^
Nov 02 15:56:38.127 INFO kablam!   |
Nov 02 15:56:38.127 INFO kablam!   = note: #[warn(unused_imports)] on by default
Nov 02 15:56:38.127 INFO kablam! 
Nov 02 15:56:38.203 INFO kablam! warning: unused variable: `protocol_name`
Nov 02 15:56:38.204 INFO kablam!   --> src/sampling.rs:20:21
Nov 02 15:56:38.204 INFO kablam!    |
Nov 02 15:56:38.205 INFO kablam! 20 | pub fn get_protocol(protocol_name: &str) -> Protocol {
Nov 02 15:56:38.205 INFO kablam!    |                     ^^^^^^^^^^^^^ help: consider using `_protocol_name` instead
Nov 02 15:56:38.205 INFO kablam!    |
Nov 02 15:56:38.206 INFO kablam!    = note: #[warn(unused_variables)] on by default
Nov 02 15:56:38.206 INFO kablam! 
Nov 02 15:56:38.206 INFO kablam! warning: unused variable: `a1`
Nov 02 15:56:38.207 INFO kablam!   --> src/scoring.rs:24:39
Nov 02 15:56:38.207 INFO kablam!    |
Nov 02 15:56:38.207 INFO kablam! 24 | pub fn calculate_lennard_jones_energy(a1: &Atom, a2: &Atom, r: f64) -> f64 {
Nov 02 15:56:38.208 INFO kablam!    |                                       ^^ help: consider using `_a1` instead
Nov 02 15:56:38.208 INFO kablam! 
Nov 02 15:56:38.208 INFO kablam! warning: unused variable: `a2`
Nov 02 15:56:38.209 INFO kablam!   --> src/scoring.rs:24:50
Nov 02 15:56:38.209 INFO kablam!    |
Nov 02 15:56:38.209 INFO kablam! 24 | pub fn calculate_lennard_jones_energy(a1: &Atom, a2: &Atom, r: f64) -> f64 {
Nov 02 15:56:38.210 INFO kablam!    |                                                  ^^ help: consider using `_a2` instead
Nov 02 15:56:38.210 INFO kablam! 
Nov 02 15:56:38.211 INFO kablam! warning: field is never used: `atoms`
Nov 02 15:56:38.212 INFO kablam!   --> src/conformation.rs:52:5
Nov 02 15:56:38.212 INFO kablam!    |
Nov 02 15:56:38.212 INFO kablam! 52 |     atoms: Vec<Atom>,
Nov 02 15:56:38.212 INFO kablam!    |     ^^^^^^^^^^^^^^^^
Nov 02 15:56:38.213 INFO kablam!    |
Nov 02 15:56:38.213 INFO kablam!    = note: #[warn(dead_code)] on by default
Nov 02 15:56:38.213 INFO kablam! 
Nov 02 15:56:38.214 INFO kablam! warning: field is never used: `residue_name`
Nov 02 15:56:38.214 INFO kablam!   --> src/conformation.rs:53:5
Nov 02 15:56:38.214 INFO kablam!    |
Nov 02 15:56:38.215 INFO kablam! 53 |     residue_name: String,
Nov 02 15:56:38.215 INFO kablam!    |     ^^^^^^^^^^^^^^^^^^^^
Nov 02 15:56:38.215 INFO kablam! 
Nov 02 15:56:38.216 INFO kablam! warning: field is never used: `residue_index`
Nov 02 15:56:38.216 INFO kablam!   --> src/conformation.rs:54:5
Nov 02 15:56:38.216 INFO kablam!    |
Nov 02 15:56:38.217 INFO kablam! 54 |     residue_index: i32,
Nov 02 15:56:38.217 INFO kablam!    |     ^^^^^^^^^^^^^^^^^^
Nov 02 15:56:38.217 INFO kablam! 
Nov 02 15:56:39.460 INFO kablam!     Finished dev [unoptimized + debuginfo] target(s) in 2.01s
Nov 02 15:56:39.462 INFO kablam! su: No module specific data is present
Nov 02 15:56:40.328 INFO running `"docker" "rm" "-f" "b09f97dffe792ff6d986ffbf3692f53553a0ecb2256ab5d809c05a3248f2a832"`
Nov 02 15:56:40.443 INFO blam! b09f97dffe792ff6d986ffbf3692f53553a0ecb2256ab5d809c05a3248f2a832
Nov 02 15:56:40.444 INFO running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/beta-1.31-1/worker-2/1.30.0:/target:rw,Z" "-v" "/mnt/big/crater/work/local/test-source/worker-2/beta-1.31-1/1.30.0:/source:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/source" "-e" "USER_ID=1000" "-e" "CMD=cargo +1.30.0 test --frozen --no-run" "-e" "CARGO_TARGET_DIR=/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/cargo-home" "-e" "RUSTUP_HOME=/rustup-home" "-m" "1536M" "--network" "none" "crater"`
Nov 02 15:56:40.670 INFO blam! 0eff2596e3c881a4a883750bc4462ccaa45e22c4aa9eda9c032174dff83b88ab
Nov 02 15:56:40.671 INFO running `"docker" "start" "-a" "0eff2596e3c881a4a883750bc4462ccaa45e22c4aa9eda9c032174dff83b88ab"`
Nov 02 15:56:40.999 INFO kablam! usermod: no changes
Nov 02 15:56:41.017 INFO kablam!    Compiling heme v0.3.1 (/source)
Nov 02 15:56:41.543 INFO kablam! warning: unused import: `std::collections::HashMap`
Nov 02 15:56:41.543 INFO kablam!  --> src/sampling.rs:1:5
Nov 02 15:56:41.543 INFO kablam!   |
Nov 02 15:56:41.543 INFO kablam! 1 | use std::collections::HashMap; 
Nov 02 15:56:41.543 INFO kablam!   |     ^^^^^^^^^^^^^^^^^^^^^^^^^
Nov 02 15:56:41.543 INFO kablam!   |
Nov 02 15:56:41.543 INFO kablam!   = note: #[warn(unused_imports)] on by default
Nov 02 15:56:41.543 INFO kablam! 
Nov 02 15:56:41.603 INFO kablam! warning: unused variable: `protocol_name`
Nov 02 15:56:41.604 INFO kablam!   --> src/sampling.rs:20:21
Nov 02 15:56:41.604 INFO kablam!    |
Nov 02 15:56:41.604 INFO kablam! 20 | pub fn get_protocol(protocol_name: &str) -> Protocol {
Nov 02 15:56:41.604 INFO kablam!    |                     ^^^^^^^^^^^^^ help: consider using `_protocol_name` instead
Nov 02 15:56:41.604 INFO kablam!    |
Nov 02 15:56:41.604 INFO kablam!    = note: #[warn(unused_variables)] on by default
Nov 02 15:56:41.604 INFO kablam! 
Nov 02 15:56:41.604 INFO kablam! warning: unused variable: `a1`
Nov 02 15:56:41.604 INFO kablam!   --> src/scoring.rs:24:39
Nov 02 15:56:41.604 INFO kablam!    |
Nov 02 15:56:41.605 INFO kablam! 24 | pub fn calculate_lennard_jones_energy(a1: &Atom, a2: &Atom, r: f64) -> f64 {
Nov 02 15:56:41.605 INFO kablam!    |                                       ^^ help: consider using `_a1` instead
Nov 02 15:56:41.605 INFO kablam! 
Nov 02 15:56:41.605 INFO kablam! warning: unused variable: `a2`
Nov 02 15:56:41.605 INFO kablam!   --> src/scoring.rs:24:50
Nov 02 15:56:41.605 INFO kablam!    |
Nov 02 15:56:41.605 INFO kablam! 24 | pub fn calculate_lennard_jones_energy(a1: &Atom, a2: &Atom, r: f64) -> f64 {
Nov 02 15:56:41.605 INFO kablam!    |                                                  ^^ help: consider using `_a2` instead
Nov 02 15:56:41.605 INFO kablam! 
Nov 02 15:56:41.617 INFO kablam! warning: field is never used: `atoms`
Nov 02 15:56:41.617 INFO kablam!   --> src/conformation.rs:52:5
Nov 02 15:56:41.617 INFO kablam!    |
Nov 02 15:56:41.617 INFO kablam! 52 |     atoms: Vec<Atom>,
Nov 02 15:56:41.617 INFO kablam!    |     ^^^^^^^^^^^^^^^^
Nov 02 15:56:41.617 INFO kablam!    |
Nov 02 15:56:41.617 INFO kablam!    = note: #[warn(dead_code)] on by default
Nov 02 15:56:41.617 INFO kablam! 
Nov 02 15:56:41.617 INFO kablam! warning: field is never used: `residue_name`
Nov 02 15:56:41.617 INFO kablam!   --> src/conformation.rs:53:5
Nov 02 15:56:41.617 INFO kablam!    |
Nov 02 15:56:41.617 INFO kablam! 53 |     residue_name: String,
Nov 02 15:56:41.617 INFO kablam!    |     ^^^^^^^^^^^^^^^^^^^^
Nov 02 15:56:41.617 INFO kablam! 
Nov 02 15:56:41.617 INFO kablam! warning: field is never used: `residue_index`
Nov 02 15:56:41.617 INFO kablam!   --> src/conformation.rs:54:5
Nov 02 15:56:41.617 INFO kablam!    |
Nov 02 15:56:41.617 INFO kablam! 54 |     residue_index: i32,
Nov 02 15:56:41.617 INFO kablam!    |     ^^^^^^^^^^^^^^^^^^
Nov 02 15:56:41.617 INFO kablam! 
Nov 02 15:56:41.620 INFO kablam! warning: function `H` should have a snake case name such as `h`
Nov 02 15:56:41.620 INFO kablam!    --> src/io.rs:152:9
Nov 02 15:56:41.620 INFO kablam!     |
Nov 02 15:56:41.620 INFO kablam! 152 | /         fn H(l: &f64) -> f64 {
Nov 02 15:56:41.620 INFO kablam! 153 | |
Nov 02 15:56:41.620 INFO kablam! 154 | |             // bounds of N choose lN
Nov 02 15:56:41.620 INFO kablam! 155 | |             // can be found by 2^(n*H(l))
Nov 02 15:56:41.620 INFO kablam! ...   |
Nov 02 15:56:41.620 INFO kablam! 161 | |             l.ln() - value * value.ln()
Nov 02 15:56:41.620 INFO kablam! 162 | |         }
Nov 02 15:56:41.620 INFO kablam!     | |_________^
Nov 02 15:56:41.620 INFO kablam!     |
Nov 02 15:56:41.620 INFO kablam!     = note: #[warn(non_snake_case)] on by default
Nov 02 15:56:41.620 INFO kablam! 
Nov 02 15:56:42.376 INFO kablam!     Finished dev [unoptimized + debuginfo] target(s) in 1.36s
Nov 02 15:56:42.379 INFO kablam! su: No module specific data is present
Nov 02 15:56:43.289 INFO running `"docker" "rm" "-f" "0eff2596e3c881a4a883750bc4462ccaa45e22c4aa9eda9c032174dff83b88ab"`
Nov 02 15:56:43.371 INFO blam! 0eff2596e3c881a4a883750bc4462ccaa45e22c4aa9eda9c032174dff83b88ab
Nov 02 15:56:43.377 INFO running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/beta-1.31-1/worker-2/1.30.0:/target:rw,Z" "-v" "/mnt/big/crater/work/local/test-source/worker-2/beta-1.31-1/1.30.0:/source:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/source" "-e" "USER_ID=1000" "-e" "CMD=cargo +1.30.0 test --frozen" "-e" "CARGO_TARGET_DIR=/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/cargo-home" "-e" "RUSTUP_HOME=/rustup-home" "-m" "1536M" "--network" "none" "crater"`
Nov 02 15:56:43.507 INFO blam! 4f3bf168854d6c7d31901730eb890af52d5bfd51f9cfd05b1ba48b01c40f9022
Nov 02 15:56:43.507 INFO running `"docker" "start" "-a" "4f3bf168854d6c7d31901730eb890af52d5bfd51f9cfd05b1ba48b01c40f9022"`
Nov 02 15:56:43.863 INFO kablam! usermod: no changes
Nov 02 15:56:43.880 INFO kablam!     Finished dev [unoptimized + debuginfo] target(s) in 0.00s
Nov 02 15:56:43.881 INFO kablam!      Running /target/debug/deps/heme-1b38c2ed0299e1c3
Nov 02 15:56:43.882 INFO blam! 
Nov 02 15:56:43.882 INFO blam! running 4 tests
Nov 02 15:56:43.882 INFO blam! test io::tests::test_lennard_jones_atom_loading ... ok
Nov 02 15:56:43.882 INFO blam! test io::tests::test_new_atoms_testy ... ok
Nov 02 15:56:43.882 INFO blam! test io::tests::test_pdb_parsing ... ok
Nov 02 15:56:43.883 INFO blam! test io::tests::test_entropy_function ... ok
Nov 02 15:56:43.883 INFO blam! 
Nov 02 15:56:43.883 INFO blam! test result: ok. 4 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
Nov 02 15:56:43.883 INFO blam! 
Nov 02 15:56:43.883 INFO kablam!      Running /target/debug/deps/heme-9440c638ba01ef01
Nov 02 15:56:43.884 INFO kablam!    Doc-tests heme
Nov 02 15:56:43.884 INFO blam! 
Nov 02 15:56:43.884 INFO blam! running 0 tests
Nov 02 15:56:43.884 INFO blam! 
Nov 02 15:56:43.884 INFO blam! test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
Nov 02 15:56:43.884 INFO blam! 
Nov 02 15:56:44.742 INFO blam! 
Nov 02 15:56:44.742 INFO blam! running 1 test
Nov 02 15:56:45.818 INFO blam! test src/conformation.rs - conformation::XYZ (line 18) ... ok
Nov 02 15:56:45.818 INFO blam! 
Nov 02 15:56:45.819 INFO blam! test result: ok. 1 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
Nov 02 15:56:45.819 INFO blam! 
Nov 02 15:56:45.825 INFO kablam! su: No module specific data is present
Nov 02 15:56:46.090 INFO running `"docker" "rm" "-f" "4f3bf168854d6c7d31901730eb890af52d5bfd51f9cfd05b1ba48b01c40f9022"`
Nov 02 15:56:46.171 INFO blam! 4f3bf168854d6c7d31901730eb890af52d5bfd51f9cfd05b1ba48b01c40f9022
