[INFO] fetching crate rustar-aligner 0.1.0...
[INFO] testing rustar-aligner-0.1.0 against 1.100.0-beta.1 for beta-1.100-2
[INFO] extracting crate rustar-aligner 0.1.0 into /workspace/builds/worker-2-tc2/source
[INFO] started tweaking crates.io crate rustar-aligner 0.1.0
[INFO] finished tweaking crates.io crate rustar-aligner 0.1.0
[INFO] tweaked toml for crates.io crate rustar-aligner 0.1.0 written to /workspace/builds/worker-2-tc2/source/Cargo.toml
[INFO] validating manifest of crates.io crate rustar-aligner 0.1.0 on toolchain 1.100.0-beta.1
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.100.0-beta.1" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate rustar-aligner 0.1.0 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.100.0-beta.1" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:3111399a4047eeb3a02b7a90e478d715f38a8c6669b5c4b49d30a17385265909" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] 1cf7ca681e9585343b26f1d3ed8401d5d7fb0f028ec094ff0df007325a281113
[INFO] running `Command { std: "docker" "start" "1cf7ca681e9585343b26f1d3ed8401d5d7fb0f028ec094ff0df007325a281113", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "1cf7ca681e9585343b26f1d3ed8401d5d7fb0f028ec094ff0df007325a281113", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "1cf7ca681e9585343b26f1d3ed8401d5d7fb0f028ec094ff0df007325a281113" "/opt/rustwide/cargo-home/bin/cargo" "+1.100.0-beta.1" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "1cf7ca681e9585343b26f1d3ed8401d5d7fb0f028ec094ff0df007325a281113", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "1cf7ca681e9585343b26f1d3ed8401d5d7fb0f028ec094ff0df007325a281113" "/opt/rustwide/cargo-home/bin/cargo" "+1.100.0-beta.1" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr]    Compiling regex-syntax v0.8.9
[INFO] [stderr]    Compiling libc v0.2.180
[INFO] [stderr]    Compiling aho-corasick v1.1.4
[INFO] [stderr]    Compiling lexical-util v0.8.5
[INFO] [stderr]    Compiling simd-adler32 v0.3.8
[INFO] [stderr]    Compiling crossbeam-channel v0.5.15
[INFO] [stderr]    Compiling bytes v1.11.1
[INFO] [stderr]    Compiling zerocopy v0.8.48
[INFO] [stderr]    Compiling miniz_oxide v0.8.9
[INFO] [stderr]    Compiling byteorder v1.5.0
[INFO] [stderr]    Compiling bitflags v2.10.0
[INFO] [stderr]    Compiling indexmap v2.13.0
[INFO] [stderr]    Compiling lexical-parse-integer v0.8.6
[INFO] [stderr]    Compiling lexical-write-integer v0.8.5
[INFO] [stderr]    Compiling flate2 v1.1.9
[INFO] [stderr]    Compiling lexical-write-float v0.8.5
[INFO] [stderr]    Compiling lexical-parse-float v0.8.5
[INFO] [stderr]    Compiling noodles-bgzf v0.33.0
[INFO] [stderr]    Compiling syn v2.0.114
[INFO] [stderr]    Compiling bit-vec v0.8.0
[INFO] [stderr]    Compiling lexical-core v0.8.5
[INFO] [stderr]    Compiling regex-automata v0.4.14
[INFO] [stderr]    Compiling anstream v0.6.21
[INFO] [stderr]    Compiling getrandom v0.2.17
[INFO] [stderr]    Compiling rustix v1.1.3
[INFO] [stderr]    Compiling rand_core v0.6.4
[INFO] [stderr]    Compiling chrono v0.4.43
[INFO] [stderr]    Compiling anyhow v1.0.101
[INFO] [stderr]    Compiling log v0.4.29
[INFO] [stderr]    Compiling clap_lex v0.7.7
[INFO] [stderr]    Compiling parking_lot_core v0.9.12
[INFO] [stderr]    Compiling clap_builder v4.5.57
[INFO] [stderr]    Compiling getrandom v0.3.4
[INFO] [stderr]    Compiling hashbrown v0.14.5
[INFO] [stderr]    Compiling jiff v0.2.19
[INFO] [stderr]    Compiling dashmap v6.1.0
[INFO] [stderr]    Compiling rustar-aligner v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]    Compiling tempfile v3.24.0
[INFO] [stderr]    Compiling memmap2 v0.9.9
[INFO] [stderr]    Compiling bstr v1.12.1
[INFO] [stderr]    Compiling regex v1.12.3
[INFO] [stderr]    Compiling clap_derive v4.5.55
[INFO] [stderr]    Compiling noodles-core v0.15.0
[INFO] [stderr]    Compiling noodles-csi v0.38.0
[INFO] [stderr]    Compiling noodles-fastq v0.14.0
[INFO] [stderr]    Compiling ppv-lite86 v0.2.21
[INFO] [stderr]    Compiling env_filter v0.1.4
[INFO] [stderr]    Compiling noodles-sam v0.64.0
[INFO] [stderr]    Compiling rand_chacha v0.3.1
[INFO] [stderr]    Compiling thiserror-impl v2.0.18
[INFO] [stderr]    Compiling rand v0.8.6
[INFO] [stderr]    Compiling clap v4.5.57
[INFO] [stderr]    Compiling thiserror v2.0.18
[INFO] [stderr]    Compiling env_logger v0.11.8
[INFO] [stderr]    Compiling noodles-bam v0.67.0
[INFO] [stderr]    Compiling noodles v0.80.0
[INFO] [stderr] warning: unused dependency `memmap2`
[INFO] [stderr]   --> Cargo.toml:38:15
[INFO] [stderr]    |
[INFO] [stderr] 38 | [dependencies.memmap2]
[INFO] [stderr]    |               ^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `cargo::unused_dependencies` is set to `warn` by default
[INFO] [stderr] help: consider removing the dependency on `memmap2`
[INFO] [stderr] warning: `rustar-aligner` (manifest) generated 1 warning
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 56.55s
[INFO] running `Command { std: "docker" "inspect" "1cf7ca681e9585343b26f1d3ed8401d5d7fb0f028ec094ff0df007325a281113", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "1cf7ca681e9585343b26f1d3ed8401d5d7fb0f028ec094ff0df007325a281113" "/opt/rustwide/cargo-home/bin/cargo" "+1.100.0-beta.1" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr]    Compiling regex-syntax v0.8.9
[INFO] [stderr]    Compiling assert_cmd v2.1.2
[INFO] [stderr]    Compiling rustar-aligner v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]    Compiling wait-timeout v0.2.1
[INFO] [stderr]    Compiling regex-automata v0.4.14
[INFO] [stderr]    Compiling bstr v1.12.1
[INFO] [stderr]    Compiling regex v1.12.3
[INFO] [stderr]    Compiling env_filter v0.1.4
[INFO] [stderr]    Compiling predicates v3.1.3
[INFO] [stderr]    Compiling env_logger v0.11.8
[INFO] [stderr]    Compiling noodles-core v0.15.0
[INFO] [stderr]    Compiling noodles-fastq v0.14.0
[INFO] [stderr]    Compiling noodles-csi v0.38.0
[INFO] [stderr]    Compiling noodles-sam v0.64.0
[INFO] [stderr]    Compiling noodles-bam v0.67.0
[INFO] [stderr]    Compiling noodles v0.80.0
[INFO] [stdout] warning: unused import: `noodles::sam::alignment::record::Flags`
[INFO] [stdout]    --> src/chimeric/output.rs:494:13
[INFO] [stdout]     |
[INFO] [stdout] 494 |         use noodles::sam::alignment::record::Flags;
[INFO] [stdout]     |             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `run_rng_seed_override` is never used
[INFO] [stdout]     --> src/params.rs:1392:8
[INFO] [stdout]      |
[INFO] [stdout] 1392 |     fn run_rng_seed_override() {
[INFO] [stdout]      |        ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]      |
[INFO] [stdout]      = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr] warning: unused dependency `memmap2`
[INFO] [stderr]   --> Cargo.toml:38:15
[INFO] [stderr]    |
[INFO] [stderr] 38 | [dependencies.memmap2]
[INFO] [stderr]    |               ^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `cargo::unused_dependencies` is set to `warn` by default
[INFO] [stderr] help: consider removing the dependency on `memmap2`
[INFO] [stderr] warning: `rustar-aligner` (manifest) generated 1 warning
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 29.93s
[INFO] running `Command { std: "docker" "inspect" "1cf7ca681e9585343b26f1d3ed8401d5d7fb0f028ec094ff0df007325a281113", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "1cf7ca681e9585343b26f1d3ed8401d5d7fb0f028ec094ff0df007325a281113" "/opt/rustwide/cargo-home/bin/cargo" "+1.100.0-beta.1" "test" "--frozen", kill_on_drop: false }`
[INFO] [stderr]    Compiling rustar-aligner v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr] warning: unused import: `noodles::sam::alignment::record::Flags`
[INFO] [stderr]    --> src/chimeric/output.rs:494:13
[INFO] [stderr]     |
[INFO] [stderr] 494 |         use noodles::sam::alignment::record::Flags;
[INFO] [stderr]     |             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]     |
[INFO] [stderr]     = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stderr] 
[INFO] [stderr] warning: function `run_rng_seed_override` is never used
[INFO] [stderr]     --> src/params.rs:1392:8
[INFO] [stderr]      |
[INFO] [stderr] 1392 |     fn run_rng_seed_override() {
[INFO] [stderr]      |        ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]      |
[INFO] [stderr]      = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stderr] 
[INFO] [stderr] warning: `rustar-aligner` (lib test) generated 2 warnings (run `cargo fix --lib -p rustar-aligner --tests` to apply 1 suggestion)
[INFO] [stderr] warning: unused dependency `memmap2`
[INFO] [stderr]   --> Cargo.toml:38:15
[INFO] [stderr]    |
[INFO] [stderr] 38 | [dependencies.memmap2]
[INFO] [stderr]    |               ^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `cargo::unused_dependencies` is set to `warn` by default
[INFO] [stderr] help: consider removing the dependency on `memmap2`
[INFO] [stderr] warning: `rustar-aligner` (manifest) generated 1 warning
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 15.56s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/build/rustar-aligner/382a8a76d7967430/out/rustar_aligner-382a8a76d7967430)
[INFO] [stdout] 
[INFO] [stdout] running 383 tests
[INFO] [stdout] test align::read_align::tests::shuffle_tied_prefix_different_seeds_can_diverge ... ok
[INFO] [stdout] test align::read_align::tests::shuffle_tied_prefix_noop_when_no_ties ... ok
[INFO] [stdout] test align::read_align::tests::shuffle_tied_prefix_respects_ties ... ok
[INFO] [stdout] test align::read_align::tests::shuffle_tied_prefix_is_deterministic ... ok
[INFO] [stdout] test align::read_align::tests::test_calculate_insert_size_negative ... ok
[INFO] [stdout] test align::read_align::tests::test_calculate_insert_size_positive ... ok
[INFO] [stdout] test align::read_align::tests::combined_transcript_for_projection_rewrites_mate2_ifrag ... ok
[INFO] [stdout] test align::read_align::tests::test_paired_alignment_result_enum_variants ... ok
[INFO] [stdout] test align::read_align::tests::test_align_paired_both_unmapped ... ok
[INFO] [stdout] test align::read_align::tests::test_align_paired_read_no_seeds ... ok
[INFO] [stdout] test align::read_align::tests::test_noncanonical_unannotated_filter ... ok
[INFO] [stdout] test align::read_align::tests::test_strand_consistency_filter ... ok
[INFO] [stdout] test align::read_align::tests::test_check_proper_pair_distance ... ok
[INFO] [stdout] test align::read_align::tests::test_check_proper_pair_too_far ... ok
[INFO] [stdout] test align::score::tests::test_annotated_junction_bonus ... ok
[INFO] [stdout] test align::score::tests::test_detect_gcag_motif ... ok
[INFO] [stdout] test align::score::tests::test_detect_gtag_motif ... ok
[INFO] [stdout] test align::score::tests::test_detect_noncanonical_motif ... ok
[INFO] [stdout] test align::score::tests::test_detect_reverse_complement_motifs ... ok
[INFO] [stdout] test align::score::tests::test_filter_category ... ok
[INFO] [stdout] test align::score::tests::test_detect_atac_motif ... ok
[INFO] [stdout] test align::score::tests::test_filter_category_from_encoded ... ok
[INFO] [stdout] test align::read_align::tests::test_transcript_filtering_mismatch ... ok
[INFO] [stdout] test align::score::tests::test_align_intron_max_custom ... ok
[INFO] [stdout] test align::score::tests::test_gap_exceeding_intron_max_is_deletion ... ok
[INFO] [stdout] test align::score::tests::test_implied_strand ... ok
[INFO] [stdout] test align::score::tests::test_junction_scan_finds_canonical ... ok
[INFO] [stdout] test align::score::tests::test_align_intron_max_default ... ok
[INFO] [stdout] test align::score::tests::test_junction_scan_no_shift_needed ... ok
[INFO] [stdout] test align::score::tests::test_junction_scan_left_flush_noncanonical ... ok
[INFO] [stdout] test align::score::tests::test_score_gap_insertion ... ok
[INFO] [stdout] test align::score::tests::test_score_gap_deletion ... ok
[INFO] [stdout] test align::read_align::tests::test_transcript_multimap_limit ... ok
[INFO] [stdout] test align::read_align::tests::test_align_read_no_seeds ... ok
[INFO] [stdout] test align::score::tests::test_score_gap_splice_junction ... ok
[INFO] [stdout] test align::read_align::tests::test_transcript_filtering_score ... ok
[INFO] [stdout] test align::seed::tests::find_exact_match ... ok
[INFO] [stdout] test align::seed::tests::no_match ... ok
[INFO] [stdout] test align::seed::tests::test_reverse_complement_read ... ok
[INFO] [stdout] test align::seed::tests::test_find_paired_seeds ... ok
[INFO] [stdout] test align::seed::tests::test_paired_seeds_pooling ... ok
[INFO] [stdout] test align::seed::tests::min_seed_length_filter ... ok
[INFO] [stdout] test align::seed::tests::get_genome_positions ... ok
[INFO] [stdout] test align::seed::tests::test_sparse_nstart_calculation ... ok
[INFO] [stdout] test align::stitch::tests::test_bin_based_cluster_bounds ... ok
[INFO] [stdout] test align::seed::tests::test_sparse_fewer_seeds_than_dense ... ok
[INFO] [stdout] test align::seed::tests::test_rc_seed_genome_positions ... ok
[INFO] [stdout] test align::stitch::tests::test_cluster_seeds_simple ... ok
[INFO] [stdout] test align::stitch::tests::test_extend_all_mismatch_returns_zero ... ok
[INFO] [stdout] test align::seed::tests::test_shared_seed_cap ... ok
[INFO] [stdout] test align::seed::tests::test_rl_seeds_found ... ok
[INFO] [stdout] test align::score::tests::test_gap_at_intron_max_is_splice_junction ... ok
[INFO] [stdout] test align::seed::tests::test_sparse_rc_read_pos_conversion ... ok
[INFO] [stdout] test align::seed::tests::test_single_end_mate_id ... ok
[INFO] [stdout] test align::stitch::tests::test_extend_chromosome_boundary ... ok
[INFO] [stdout] test align::stitch::tests::test_extend_perfect_match_rightward ... ok
[INFO] [stdout] test align::stitch::tests::test_wa_entry_sorting ... ok
[INFO] [stdout] test align::stitch::tests::test_window_flank_extension ... ok
[INFO] [stdout] test align::stitch::tests::test_overhang_check_accepts_sufficient_overhang ... ok
[INFO] [stdout] test align::stitch::tests::test_window_merge_logic ... ok
[INFO] [stdout] test align::transcript::tests::test_cigar_consumes ... ok
[INFO] [stdout] test align::transcript::tests::test_cigar_op_display ... ok
[INFO] [stdout] test align::transcript::tests::test_cigar_string ... ok
[INFO] [stdout] test align::transcript::tests::test_count_soft_clips_both_ends ... ok
[INFO] [stdout] test align::stitch::tests::test_extend_perfect_match_leftward ... ok
[INFO] [stdout] test align::transcript::tests::test_count_soft_clips_left_only ... ok
[INFO] [stdout] test align::transcript::tests::test_count_soft_clips_none ... ok
[INFO] [stdout] test align::stitch::tests::test_extend_n_bases_skipped ... ok
[INFO] [stdout] test align::stitch::tests::test_extend_recovery_through_mismatch ... ok
[INFO] [stdout] test align::stitch::tests::test_extend_zero_max_extend ... ok
[INFO] [stdout] test align::stitch::tests::test_extend_stops_at_optimal_point_with_mismatches ... ok
[INFO] [stdout] test align::stitch::tests::test_overhang_check_rejects_short_overhang ... ok
[INFO] [stdout] test align::transcript::tests::test_exon ... ok
[INFO] [stdout] test align::transcript::tests::test_transcript_lengths ... ok
[INFO] [stdout] test chimeric::detect::tests::test_genomic_distance_different_chr ... ok
[INFO] [stdout] test chimeric::detect::tests::test_genomic_distance_overlapping ... ok
[INFO] [stdout] test chimeric::detect::tests::test_genomic_distance_same_chr ... ok
[INFO] [stdout] test chimeric::detect::tests::test_detect_chimeric_old_inter_chr_pair ... ok
[INFO] [stdout] test chimeric::detect::tests::test_detect_chimeric_old_no_chimera_single_transcript ... ok
[INFO] [stdout] test chimeric::detect::tests::test_detect_chimeric_old_segment_too_short ... ok
[INFO] [stdout] test chimeric::detect::tests::test_inter_mate_chimeric_empty_exons_returns_none ... ok
[INFO] [stdout] test chimeric::detect::tests::test_detect_chimeric_old_score_drop_too_large ... ok
[INFO] [stdout] test chimeric::detect::tests::test_inter_mate_chimeric_concordant_returns_none ... ok
[INFO] [stdout] test chimeric::detect::tests::test_inter_mate_chimeric_same_strand ... ok
[INFO] [stdout] test chimeric::detect::tests::test_transcript_to_segment_basic ... ok
[INFO] [stdout] test chimeric::detect::tests::test_inter_mate_chimeric_different_chromosomes ... ok
[INFO] [stdout] test chimeric::detect::tests::test_is_chimeric_signature_different_chr ... ok
[INFO] [stdout] test chimeric::output::tests::test_chimeric_junction_writer_creation ... ok
[INFO] [stdout] test chimeric::output::tests::test_cigar_to_string ... ok
[INFO] [stdout] test chimeric::output::tests::test_within_bam_donor_has_sequence ... ok
[INFO] [stdout] test chimeric::output::tests::test_within_bam_donor_not_supplementary ... ok
[INFO] [stdout] test chimeric::output::tests::test_within_bam_returns_two_records ... ok
[INFO] [stdout] test chimeric::detect::tests::test_transcript_to_segment_empty_returns_error ... ok
[INFO] [stdout] test chimeric::output::tests::test_within_bam_sa_tag_format ... ok
[INFO] [stdout] test chimeric::output::tests::test_write_inter_chromosomal ... ok
[INFO] [stdout] test chimeric::score::tests::test_calculate_repeat_length_inter_chromosomal ... ok
[INFO] [stdout] test chimeric::score::tests::test_calculate_repeat_length_no_repeat ... ok
[INFO] [stdout] test chimeric::score::tests::test_calculate_repeat_length_with_repeat ... ok
[INFO] [stdout] test chimeric::score::tests::test_classify_junction_type_canonical ... ok
[INFO] [stdout] test chimeric::score::tests::test_classify_junction_type_inter_chromosomal ... ok
[INFO] [stdout] test chimeric::output::tests::test_write_strand_break ... ok
[INFO] [stdout] test chimeric::score::tests::test_base_to_char ... ok
[INFO] [stdout] test chimeric::score::tests::test_classify_junction_type_strand_break ... ok
[INFO] [stdout] test chimeric::score::tests::test_complement ... ok
[INFO] [stdout] test chimeric::score::tests::test_extract_motif_acceptor_forward ... ok
[INFO] [stdout] test chimeric::score::tests::test_extract_motif_donor_forward ... ok
[INFO] [stdout] test chimeric::segment::tests::test_chimeric_meets_min_score ... ok
[INFO] [stdout] test chimeric::segment::tests::test_chimeric_meets_min_segment_length ... ok
[INFO] [stdout] test chimeric::segment::tests::test_segment_lengths ... ok
[INFO] [stdout] test chimeric::segment::tests::test_segment_min_length ... ok
[INFO] [stdout] test chimeric::segment::tests::test_strand_symbols ... ok
[INFO] [stdout] test chimeric::tests::test_module_exports ... ok
[INFO] [stdout] test chimeric::detect::tests::test_is_chimeric_signature_strand_break ... ok
[INFO] [stdout] test chimeric::segment::tests::test_breakpoint_positions_forward ... ok
[INFO] [stdout] test cpu::tests::binary_target_is_not_empty ... ok
[INFO] [stdout] test chimeric::segment::tests::test_chimeric_alignment_creation ... ok
[INFO] [stdout] test chimeric::detect::tests::test_is_chimeric_signature_large_distance ... ok
[INFO] [stdout] test chimeric::detect::tests::test_inter_mate_chimeric_segment_too_short ... ok
[INFO] [stdout] test chimeric::detect::tests::test_is_chimeric_signature_close_same_strand ... ok
[INFO] [stdout] test chimeric::detect::tests::test_inter_mate_chimeric_too_far ... ok
[INFO] [stdout] test cpu::tests::check_cpu_compat_passes_on_current_hardware ... ok
[INFO] [stdout] test cpu::tests::cpu_detected_line_starts_with_cpu ... ok
[INFO] [stdout] test genome::fasta::tests::empty_file_error ... ok
[INFO] [stdout] test genome::fasta::tests::multiple_files ... ok
[INFO] [stdout] test cpu::tests::version_body_contains_expected_fields ... ok
[INFO] [stdout] test genome::fasta::tests::case_insensitive ... ok
[INFO] [stdout] test genome::fasta::tests::parse_multiple_chromosomes ... ok
[INFO] [stdout] test genome::fasta::tests::parse_single_chromosome ... ok
[INFO] [stdout] test genome::fasta::tests::sequence_before_header_error ... ok
[INFO] [stdout] test genome::tests::position_to_chr_mapping ... ok
[INFO] [stdout] test index::packed_array::tests::bit_width_32 ... ok
[INFO] [stdout] test index::packed_array::tests::masking ... ok
[INFO] [stdout] test index::packed_array::tests::round_trip_cross_byte_boundary ... ok
[INFO] [stdout] test index::packed_array::tests::round_trip_single_byte ... ok
[INFO] [stdout] test index::packed_array::tests::sequential_writes ... ok
[INFO] [stdout] test index::sa_index::tests::calculate_num_indices ... ok
[INFO] [stdout] test genome::tests::append_sjdb_with_empty_gsj_is_noop ... ok
[INFO] [stdout] test genome::tests::two_chromosomes_padding ... ok
[INFO] [stdout] test genome::tests::reverse_complement_correctness ... ok
[INFO] [stdout] test genome::tests::single_chromosome_padding ... ok
[INFO] [stdout] test genome::tests::append_sjdb_extends_forward_and_rebuilds_rc ... ok
[INFO] [stdout] test index::sa_index::tests::genome_sa_index_start_progression ... ok
[INFO] [stdout] test index::sa_index::tests::build_simple_index ... ok
[INFO] [stdout] test index::io::tests::load_generated_index ... ok
[INFO] [stdout] test index::sa_index::tests::hierarchical_lookup_full_kmer_present ... ok
[INFO] [stdout] test index::sa_index::tests::hierarchical_lookup_no_prefix_exists ... ok
[INFO] [stdout] test index::suffix_array::tests::gstrand_bit_calculation ... ok
[INFO] [stdout] test index::sa_index::tests::lookup_present_kmer ... ok
[INFO] [stdout] test index::suffix_array::tests::suffix_sorting ... ok
[INFO] [stdout] test index::suffix_array::tests::reverse_complement_included ... ok
[INFO] [stdout] test index::suffix_array::tests::decode_sa_entry ... ok
[INFO] [stdout] test index::sa_index::tests::hierarchical_lookup_fallback_to_shorter ... ok
[INFO] [stdout] test index::suffix_array::tests::build_small_genome ... ok
[INFO] [stdout] test index::sa_index::tests::hierarchical_lookup_matches_lookup_when_present ... ok
[INFO] [stdout] test index::sa_index::tests::hierarchical_lookup_tight_vs_nontight ... ok
[INFO] [stdout] test io::bam::tests::test_bam_batch_write ... ok
[INFO] [stdout] test io::bam::tests::test_sorted_bam_limit_ram_exceeded ... ok
[INFO] [stdout] test index::sa_index::tests::lookup_absent_kmer ... ok
[INFO] [stdout] test io::fastq::tests::test_clip_read_3p ... ok
[INFO] [stdout] test io::fastq::tests::test_clip_read_5p ... ok
[INFO] [stdout] test io::fastq::tests::test_clip_read_both ... ok
[INFO] [stdout] test io::fastq::tests::test_clip_read_entire ... ok
[INFO] [stdout] test io::fastq::tests::test_clip_read_none ... ok
[INFO] [stdout] test io::fastq::tests::test_decode_base ... ok
[INFO] [stdout] test io::fastq::tests::test_encode_base ... ok
[INFO] [stdout] test io::fastq::tests::test_fastq_reader_plain ... ok
[INFO] [stdout] test io::fastq::tests::test_paired_batch_reading ... ok
[INFO] [stdout] test io::fastq::tests::test_fastq_reader_gzip ... ok
[INFO] [stdout] test io::fastq::tests::test_paired_reader_length_mismatch_mate1_longer ... ok
[INFO] [stdout] test io::fastq::tests::test_paired_reader_length_mismatch_mate2_longer ... ok
[INFO] [stdout] test io::fastq::tests::test_paired_reader_matching_names ... ok
[INFO] [stdout] test io::fastq::tests::test_paired_reader_name_mismatch ... ok
[INFO] [stdout] test io::fastq::tests::test_strip_mate_suffix_dot ... ok
[INFO] [stdout] test io::fastq::tests::test_strip_mate_suffix_no_suffix ... ok
[INFO] [stdout] test io::fastq::tests::test_strip_mate_suffix_slash ... ok
[INFO] [stdout] test io::fastq::tests::test_strip_mate_suffix_underscore ... ok
[INFO] [stdout] test io::fastq::tests::test_strip_mate_suffix_with_space ... ok
[INFO] [stdout] test io::bam::tests::test_bam_alignment_write ... ok
[INFO] [stdout] test io::bam::tests::test_bam_compression_level_zero ... ok
[INFO] [stdout] test io::bam::tests::test_bam_transcriptome_writer_creation ... ok
[INFO] [stdout] test io::sam::tests::test_build_ji_tag_empty ... ok
[INFO] [stdout] test io::sam::tests::test_build_ji_tag_basic ... ok
[INFO] [stdout] test io::sam::tests::test_build_jm_tag_annotated ... ok
[INFO] [stdout] test io::sam::tests::test_build_jm_tag_basic ... ok
[INFO] [stdout] test io::sam::tests::test_build_jm_tag_empty ... ok
[INFO] [stdout] test io::sam::tests::test_build_jm_tag_multiple_junctions ... ok
[INFO] [stdout] test io::sam::tests::test_build_md_tag_deletion ... ok
[INFO] [stdout] test io::bam::tests::test_bam_writer_creation ... ok
[INFO] [stdout] test io::bam::tests::test_bam_unmapped_write ... ok
[INFO] [stdout] test io::sam::tests::test_build_md_tag_insertion ... ok
[INFO] [stdout] test io::sam::tests::test_build_md_tag_perfect_match ... ok
[INFO] [stdout] test io::sam::tests::test_build_md_tag_soft_clip ... ok
[INFO] [stdout] test io::sam::tests::test_build_md_tag_mismatches ... ok
[INFO] [stdout] test io::sam::tests::test_build_paired_mate_record_both_forward ... ok
[INFO] [stdout] test io::sam::tests::test_build_paired_mate_record_cross_strand ... ok
[INFO] [stdout] test io::sam::tests::test_build_paired_mate_record_flags ... ok
[INFO] [stdout] test io::sam::tests::test_build_paired_mate_record_mate_fields ... ok
[INFO] [stdout] test io::sam::tests::test_build_paired_mate_record_per_mate_tags ... ok
[INFO] [stdout] test io::bam::tests::test_sorted_bam_limit_ram_unlimited ... ok
[INFO] [stdout] test io::sam::tests::test_convert_cigar ... ok
[INFO] [stdout] test io::sam::tests::test_edit_distance_computation ... ok
[INFO] [stdout] test io::sam::tests::test_out_sam_attributes_explicit ... ok
[INFO] [stdout] test io::sam::tests::test_nm_vs_nm_mismatch_difference ... ok
[INFO] [stdout] test io::sam::tests::test_build_paired_unmapped_records ... ok
[INFO] [stdout] test io::sam::tests::test_out_sam_attributes_none ... ok
[INFO] [stdout] test io::sam::tests::test_out_sam_attributes_standard ... ok
[INFO] [stdout] test io::sam::tests::test_build_half_mapped_flags ... ok
[INFO] [stdout] test io::sam::tests::test_out_sam_mult_nmax ... ok
[INFO] [stdout] test io::sam::tests::test_build_sam_header ... ok
[INFO] [stdout] test io::sam::tests::test_build_sam_header_with_rg ... ok
[INFO] [stdout] test io::sam::tests::test_build_half_mapped_rnext_pnext ... ok
[INFO] [stdout] test io::sam::tests::test_build_half_mapped_mate_order ... ok
[INFO] [stdout] test io::sam::tests::test_tags_jm_ji_md_in_record ... ok
[INFO] [stdout] test io::sam::tests::test_transcript_to_record ... ok
[INFO] [stdout] test io::sam::tests::test_sam_output_includes_rg_header_and_tag ... ok
[INFO] [stdout] test io::sam::tests::test_transcript_to_record_has_tags ... ok
[INFO] [stdout] test io::sam::tests::test_xs_tag_reverse_strand ... ok
[INFO] [stdout] test io::sam::tests::test_xs_not_emitted_when_disabled ... ok
[INFO] [stdout] test io::sam::tests::test_xs_tag_conflicting_motifs ... ok
[INFO] [stdout] test io::sam::tests::test_xs_tag_spliced ... ok
[INFO] [stdout] test io::sam::tests::test_xs_tag_unspliced ... ok
[INFO] [stdout] test io::sam::tests::test_tags_nh_hi_as_nm ... ok
[INFO] [stdout] test junction::gtf::tests::test_extract_junctions_configured_custom_transcript_tag ... ok
[INFO] [stdout] test junction::gtf::tests::test_extract_junctions_multiple_transcripts ... ok
[INFO] [stdout] test junction::gtf::tests::test_extract_junctions_single_exon_transcript ... ok
[INFO] [stdout] test junction::gtf::tests::test_extract_junctions_single_transcript ... ok
[INFO] [stdout] test junction::gtf::tests::test_parse_attributes ... ok
[INFO] [stdout] test junction::gtf::tests::test_extract_junctions_unknown_chromosome ... ok
[INFO] [stdout] test junction::gtf::tests::test_junction_coordinate_calculation ... ok
[INFO] [stdout] test junction::gtf::tests::test_parse_attributes_no_trailing_semicolon ... ok
[INFO] [stdout] test junction::gtf::tests::test_parse_gtf_configured_custom_feature ... ok
[INFO] [stdout] test junction::gtf::tests::test_parse_gtf_configured_chr_prefix ... ok
[INFO] [stdout] test junction::gtf::tests::test_parse_gtf_line_invalid_columns ... ok
[INFO] [stdout] test junction::gtf::tests::test_parse_gtf_filters_non_exons ... ok
[INFO] [stdout] test junction::gtf::tests::test_parse_gtf_with_comments ... ok
[INFO] [stdout] test junction::gtf::tests::test_parse_gtf_line_valid ... ok
[INFO] [stdout] test io::sam::tests::test_secondary_flag ... ok
[INFO] [stdout] test junction::sj_output::tests::test_encode_motif_atac ... ok
[INFO] [stdout] test junction::sj_output::tests::test_encode_motif_ctac ... ok
[INFO] [stdout] test junction::sj_output::tests::test_encode_motif_gtag ... ok
[INFO] [stdout] test junction::sj_output::tests::test_encode_motif_gtat ... ok
[INFO] [stdout] test junction::sj_output::tests::test_encode_motif_ctgc ... ok
[INFO] [stdout] test junction::sj_output::tests::test_encode_motif_gcag ... ok
[INFO] [stdout] test junction::sj_output::tests::test_max_overhang_update ... ok
[INFO] [stdout] test junction::sj_output::tests::test_record_junction_multi ... ok
[INFO] [stdout] test io::sam::tests::test_sam_writer_creation ... ok
[INFO] [stdout] test junction::sj_output::tests::test_record_junction_multiple_times ... ok
[INFO] [stdout] test junction::sj_output::tests::test_encode_motif_noncanonical ... ok
[INFO] [stdout] test junction::sj_output::tests::test_record_junction_unique ... ok
[INFO] [stdout] test junction::sj_output::tests::test_sj_stats_new ... ok
[INFO] [stdout] test junction::sj_output::tests::test_sj_key_equality ... ok
[INFO] [stdout] test junction::sj_output::tests::test_compute_surviving_junctions_basic ... ok
[INFO] [stdout] test junction::sj_output::tests::test_compute_surviving_junctions_annotated_bypass ... ok
[INFO] [stdout] test junction::sjdb_insert::tests::build_gsj_errors_when_flank_underflows ... ok
[INFO] [stdout] test junction::sjdb_insert::tests::build_gsj_multiple_junctions_concatenate ... ok
[INFO] [stdout] test junction::sjdb_insert::tests::build_gsj_canonical_no_shift ... ok
[INFO] [stdout] test junction::sjdb_insert::tests::build_gsj_errors_when_flank_overruns_genome ... ok
[INFO] [stdout] test junction::sjdb_insert::tests::dedup_collapses_two_non_canonical_to_undefined_strand ... ok
[INFO] [stdout] test junction::sj_output::tests::test_compute_surviving_matches_write_output ... ok
[INFO] [stdout] test junction::sjdb_insert::tests::dedup_prefers_canonical_over_non_canonical ... ok
[INFO] [stdout] test junction::sjdb_insert::tests::dedup_prefers_defined_strand_over_undefined ... ok
[INFO] [stdout] test junction::sjdb_insert::tests::dedup_prefers_strand_matching_motif ... ok
[INFO] [stdout] test junction::sjdb_insert::tests::build_gsj_noncanonical_reverts_shift_for_extraction ... ok
[INFO] [stdout] test junction::sj_output::tests::test_sj_filter_annotated_bypasses_filters ... ok
[INFO] [stdout] test junction::sjdb_insert::tests::prepare_gt_ag_forward_no_repeat ... ok
[INFO] [stdout] test junction::sjdb_insert::tests::prepare_dot_strand_derived_from_motif ... ok
[INFO] [stdout] test junction::sjdb_insert::tests::shifts_cap_at_255 ... ok
[INFO] [stdout] test junction::sjdb_insert::tests::prepare_shift_left_applied_to_coords ... ok
[INFO] [stdout] test junction::sj_output::tests::test_write_output ... ok
[INFO] [stdout] test junction::sj_output::tests::test_sj_filter_noncanonical_needs_high_overhang ... ok
[INFO] [stdout] test junction::sjdb_insert::tests::shifts_no_repeat ... ok
[INFO] [stdout] test junction::sjdb_insert::tests::shifts_with_repeat_on_right ... ok
[INFO] [stdout] test junction::sjdb_insert::tests::stored_and_original_coords_differ_for_canonical_only ... ok
[INFO] [stdout] test junction::sjdb_insert::tests::write_sjdb_info_matches_star_format ... ok
[INFO] [stdout] test junction::sjdb_insert::tests::shifts_with_repeat_on_left ... ok
[INFO] [stdout] test junction::sjdb_insert::tests::sort_orders_by_stored_coords ... ok
[INFO] [stdout] test junction::sjdb_insert::tests::shifts_stop_at_n_base ... ok
[INFO] [stdout] test junction::tests::test_insert_novel_junctions ... ok
[INFO] [stdout] test junction::tests::test_junction_db_empty ... ok
[INFO] [stdout] test junction::tests::test_junction_key_equality ... ok
[INFO] [stdout] test mapq::tests::test_mapq_capped ... ok
[INFO] [stdout] test junction::tests::test_junction_strand_specific ... ok
[INFO] [stdout] test io::sam::tests::test_sam_attribute_set_expansion ... ok
[INFO] [stdout] test mapq::tests::test_mapq_unique ... ok
[INFO] [stdout] test mapq::tests::test_mapq_unmapped ... ok
[INFO] [stdout] test mapq::tests::test_mapq_multi ... ok
[INFO] [stdout] test junction::tests::test_junction_lookup ... ok
[INFO] [stdout] test mapq::tests::test_mapq_star_lookup ... ok
[INFO] [stdout] test junction::sjdb_insert::tests::write_sjdb_list_is_1_based_chr_local ... ok
[INFO] [stdout] test junction::sjdb_insert::tests::write_sjdb_list_uses_chr_local_coords_for_second_chromosome ... ok
[INFO] [stdout] test params::tests::chimeric_params ... ok
[INFO] [stdout] test params::tests::chimeric_params_defaults ... ok
[INFO] [stdout] test params::tests::defaults ... ok
[INFO] [stdout] test params::tests::genome_generate_mode ... ok
[INFO] [stdout] test junction::tests::test_filter_novel_junctions ... ok
[INFO] [stdout] test junction::tests::test_filter_novel_junctions_noncanonical_strict ... ok
[INFO] [stdout] test params::tests::chimeric_params_extended ... ok
[INFO] [stdout] test params::tests::rg_line_missing_id_prefix_errors ... ok
[INFO] [stdout] test params::tests::quant_transcriptome_sam_default ... ok
[INFO] [stdout] test params::tests::quant_transcriptome_sam_enabled ... ok
[INFO] [stdout] test params::tests::rg_line_count_mismatch_errors ... ok
[INFO] [stdout] test params::tests::quant_transcriptome_sam_output_override ... ok
[INFO] [stdout] test params::tests::rg_line_multi ... ok
[INFO] [stdout] test params::tests::rg_line_default_unset ... ok
[INFO] [stdout] test params::tests::out_sam_type_parsing ... ok
[INFO] [stdout] test params::tests::validate_genome_generate_needs_fasta ... ok
[INFO] [stdout] test params::tests::validate_align_needs_reads ... ok
[INFO] [stdout] test params::tests::rg_line_single_replicates_for_multi_file ... ok
[INFO] [stdout] test params::tests::rg_line_single ... ok
[INFO] [stdout] test params::tests::sj_stitch_mismatch ... ok
[INFO] [stdout] test params::tests::scoring_overrides ... ok
[INFO] [stdout] test params::tests::typical_align_command ... ok
[INFO] [stdout] test params::tests::validate_transcriptome_sam_at_genome_generate_needs_gtf ... ok
[INFO] [stdout] test params::tests::validate_rg_attr_without_line_errors ... ok
[INFO] [stdout] test params::tests::validate_transcriptome_sam_at_align_reads_tolerates_no_gtf ... ok
[INFO] [stdout] test params::tests::validate_transcriptome_sam_with_gtf_ok ... ok
[INFO] [stdout] test quant::tests::test_gene_counts_multimapper ... ok
[INFO] [stdout] test quant::tests::test_gene_counts_no_feature ... ok
[INFO] [stdout] test quant::tests::test_gene_annotation_basic ... ok
[INFO] [stdout] test quant::tests::test_gene_counts_strand2 ... ok
[INFO] [stdout] test params::tests::win_bin_window_dist_custom ... ok
[INFO] [stdout] test quant::tests::test_overlapping_genes_ambiguous ... ok
[INFO] [stdout] test quant::tests::test_gene_counts_unmapped ... ok
[INFO] [stdout] test quant::tests::test_gene_counts_unique ... ok
[INFO] [stdout] test quant::tests::test_overlapping_genes_none ... ok
[INFO] [stdout] test params::tests::win_bin_window_dist_default ... ok
[INFO] [stdout] test quant::transcriptome::tests::exon_ge_tr_info_tab_byte_format ... ok
[INFO] [stdout] test quant::transcriptome::tests::exon_info_respects_sort_order ... ok
[INFO] [stdout] test quant::transcriptome::tests::exon_info_tab_byte_format ... ok
[INFO] [stdout] test quant::transcriptome::tests::gene_info_tab_byte_format ... ok
[INFO] [stdout] test quant::tests::test_gene_counts_too_many_loci ... ok
[INFO] [stdout] test quant::transcriptome::tests::gene_interning_first_seen_wins ... ok
[INFO] [stdout] test quant::transcriptome::tests::inconsistent_strand_skipped ... ok
[INFO] [stdout] test quant::tests::test_overlapping_genes_exact ... ok
[INFO] [stdout] test quant::transcriptome::tests::load_handles_empty_gene_name_and_biotype ... ok
[INFO] [stdout] test quant::transcriptome::tests::mode_flags ... ok
[INFO] [stdout] test quant::transcriptome::tests::mode_from_str_all_three ... ok
[INFO] [stdout] test quant::transcriptome::tests::filter_default_rejects_indels ... ok
[INFO] [stdout] test quant::transcriptome::tests::filter_keeps_indels_when_allowed ... ok
[INFO] [stdout] test quant::transcriptome::tests::filter_extends_softclip_too_many_mismatches_rejects ... ok
[INFO] [stdout] test quant::transcriptome::tests::multi_exon_transcript_ex_len_cum ... ok
[INFO] [stdout] test quant::transcriptome::tests::project_before_all_transcripts_returns_empty ... ok
[INFO] [stdout] test quant::transcriptome::tests::project_onto_multiple_overlapping_transcripts ... ok
[INFO] [stdout] test quant::transcriptome::tests::project_past_transcript_end_fails ... ok
[INFO] [stdout] test quant::transcriptome::tests::project_single_exon_align_into_single_exon_transcript ... ok
[INFO] [stdout] test quant::transcriptome::tests::project_two_exon_align_matching_junction ... ok
[INFO] [stdout] test quant::transcriptome::tests::reverse_strand_transcript ... ok
[INFO] [stdout] test quant::transcriptome::tests::project_multi_exon_align_onto_longer_transcript ... ok
[INFO] [stdout] test quant::transcriptome::tests::project_onto_reverse_strand_transcript ... ok
[INFO] [stdout] test quant::transcriptome::tests::single_exon_transcript_metadata ... ok
[INFO] [stdout] test quant::transcriptome::tests::roundtrip_write_then_load_matches_in_memory_index ... ok
[INFO] [stdout] test quant::transcriptome::tests::sjdb_list_dedups_and_merges_genes ... ok
[INFO] [stdout] test quant::transcriptome::tests::sjdb_list_single_exon_transcript_has_no_junctions ... ok
[INFO] [stdout] test quant::transcriptome::tests::sjdb_list_from_gtf_tab_byte_format ... ok
[INFO] [stdout] test quant::transcriptome::tests::tr_end_max_sorted_is_running_max ... ok
[INFO] [stdout] test quant::transcriptome::tests::tr_exi_respects_sort_order_not_insertion_order ... ok
[INFO] [stdout] test quant::transcriptome::tests::transcript_info_tab_byte_format ... ok
[INFO] [stdout] test quant::transcriptome::tests::filter_extends_left_softclip_with_zero_mismatches ... ok
[INFO] [stdout] test quant::transcriptome::tests::two_transcripts_same_gene ... ok
[INFO] [stdout] test quant::transcriptome::tests::project_mismatched_junction_fails ... ok
[INFO] [stdout] test quant::transcriptome::tests::unknown_chromosome_skipped ... ok
[INFO] [stdout] test stats::tests::test_multiple_reads ... ok
[INFO] [stdout] test quant::transcriptome::tests::transcript_info_tab_reverse_strand ... ok
[INFO] [stdout] test stats::tests::test_percentages ... ok
[INFO] [stdout] test stats::tests::test_record_chimeric ... ok
[INFO] [stdout] test stats::tests::test_record_multi ... ok
[INFO] [stdout] test stats::tests::test_empty_stats ... ok
[INFO] [stdout] test stats::tests::test_half_mapped_counter ... ok
[INFO] [stdout] test stats::tests::test_record_too_many ... ok
[INFO] [stdout] test stats::tests::test_record_transcript_stats ... ok
[INFO] [stdout] test quant::transcriptome::tests::tr_exi_sorted_cumulative ... ok
[INFO] [stdout] test stats::tests::test_record_unique ... ok
[INFO] [stdout] test stats::tests::test_stats_default ... ok
[INFO] [stdout] test stats::tests::test_record_unmapped ... ok
[INFO] [stdout] test stats::tests::test_record_unmapped_reason ... ok
[INFO] [stdout] test stats::tests::test_undo_mapped_record_bysj_multi ... ok
[INFO] [stdout] test quant::transcriptome::tests::transcript_info_tab_emax_running_max_excludes_current ... ok
[INFO] [stdout] test quant::transcriptome::tests::filter_mode_single_end_keeps_softclip_as_is ... ok
[INFO] [stdout] test stats::tests::test_splice_motif_aggregation ... ok
[INFO] [stdout] test stats::tests::test_log_final_multiqc_fields ... ok
[INFO] [stdout] test stats::tests::test_undo_mapped_record_bysj_noop_when_empty ... ok
[INFO] [stdout] test stats::tests::test_undo_mapped_record_bysj_unique ... ok
[INFO] [stdout] test stats::tests::test_write_log_final_format ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 383 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.36s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/debug/build/rustar-aligner/4f52ad6fc9c2521a/out/rustar_aligner-4f52ad6fc9c2521a)
[INFO] [stdout] running 0 tests
[INFO] [stderr]    Doc-tests rustar_aligner
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "1cf7ca681e9585343b26f1d3ed8401d5d7fb0f028ec094ff0df007325a281113", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "1cf7ca681e9585343b26f1d3ed8401d5d7fb0f028ec094ff0df007325a281113", kill_on_drop: false }`
[INFO] [stdout] 1cf7ca681e9585343b26f1d3ed8401d5d7fb0f028ec094ff0df007325a281113
