[INFO] fetching crate rsomics-bamio 0.8.4...
[INFO] testing rsomics-bamio-0.8.4 against 1.99.0-beta.8 for beta-1.100-2
[INFO] extracting crate rsomics-bamio 0.8.4 into /workspace/builds/worker-4-tc1/source
[INFO] started tweaking crates.io crate rsomics-bamio 0.8.4
[INFO] removed 0 missing tests
[INFO] finished tweaking crates.io crate rsomics-bamio 0.8.4
[INFO] tweaked toml for crates.io crate rsomics-bamio 0.8.4 written to /workspace/builds/worker-4-tc1/source/Cargo.toml
[INFO] validating manifest of crates.io crate rsomics-bamio 0.8.4 on toolchain 1.99.0-beta.8
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.99.0-beta.8" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate rsomics-bamio 0.8.4 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.99.0-beta.8" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded noodles-core v0.20.0
[INFO] [stderr]   Downloaded noodles-bam v0.89.0
[INFO] [stderr]   Downloaded libdeflater v1.25.2
[INFO] [stderr]   Downloaded libdeflate-sys v1.25.2
[INFO] [stderr]   Downloaded linear-map v1.2.0
[INFO] [stderr]   Downloaded rust-htslib v1.0.1
[INFO] [stderr]   Downloaded fs-utils v1.1.4
[INFO] [stderr]   Downloaded noodles-csi v0.56.0
[INFO] [stderr]   Downloaded rsomics-common v0.12.0
[INFO] [stderr]   Downloaded noodles-bgzf v0.47.0
[INFO] [stderr]   Downloaded noodles-fasta v0.61.0
[INFO] [stderr]   Downloaded noodles-util v0.79.0
[INFO] [stderr]   Downloaded noodles-cram v0.93.0
[INFO] [stderr]   Downloaded noodles v0.110.0
[INFO] [stderr]   Downloaded lzma-rust2 v0.16.5
[INFO] [stderr]   Downloaded noodles-sam v0.85.0
[INFO] [stderr]   Downloaded zlib-rs v0.6.3
[INFO] [stderr]   Downloaded hts-sys v2.2.1
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:3111399a4047eeb3a02b7a90e478d715f38a8c6669b5c4b49d30a17385265909" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] 80a6ce2b106cdd01aaba439ca962fa9ce5b082b47b95c0a753d24b252bb19c3e
[INFO] running `Command { std: "docker" "start" "80a6ce2b106cdd01aaba439ca962fa9ce5b082b47b95c0a753d24b252bb19c3e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "80a6ce2b106cdd01aaba439ca962fa9ce5b082b47b95c0a753d24b252bb19c3e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "80a6ce2b106cdd01aaba439ca962fa9ce5b082b47b95c0a753d24b252bb19c3e" "/opt/rustwide/cargo-home/bin/cargo" "+1.99.0-beta.8" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "80a6ce2b106cdd01aaba439ca962fa9ce5b082b47b95c0a753d24b252bb19c3e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "80a6ce2b106cdd01aaba439ca962fa9ce5b082b47b95c0a753d24b252bb19c3e" "/opt/rustwide/cargo-home/bin/cargo" "+1.99.0-beta.8" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr]    Compiling memchr v2.8.1
[INFO] [stderr]    Compiling pkg-config v0.3.33
[INFO] [stderr]    Compiling lexical-util v1.0.7
[INFO] [stderr]    Compiling zlib-rs v0.6.3
[INFO] [stderr]    Compiling bitflags v2.11.1
[INFO] [stderr]    Compiling writeable v0.6.3
[INFO] [stderr]    Compiling clang-sys v1.9.1
[INFO] [stderr]    Compiling litemap v0.8.2
[INFO] [stderr]    Compiling regex-syntax v0.8.11
[INFO] [stderr]    Compiling icu_properties_data v2.2.0
[INFO] [stderr]    Compiling jobserver v0.1.35
[INFO] [stderr]    Compiling syn v3.0.3
[INFO] [stderr]    Compiling zerovec-derive v0.11.3
[INFO] [stderr]    Compiling zerofrom-derive v0.1.7
[INFO] [stderr]    Compiling yoke-derive v0.8.2
[INFO] [stderr]    Compiling icu_normalizer_data v2.2.0
[INFO] [stderr]    Compiling bit-vec v0.9.1
[INFO] [stderr]    Compiling bindgen v0.72.1
[INFO] [stderr]    Compiling either v1.17.0
[INFO] [stderr]    Compiling cc v1.2.63
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling itertools v0.13.0
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling smallvec v1.15.2
[INFO] [stderr]    Compiling bstr v1.12.1
[INFO] [stderr]    Compiling lexical-parse-integer v1.0.6
[INFO] [stderr]    Compiling lexical-write-integer v1.0.6
[INFO] [stderr]    Compiling nom v7.1.3
[INFO] [stderr]    Compiling rustc-hash v2.1.3
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]    Compiling aho-corasick v1.1.4
[INFO] [stderr]    Compiling lexical-parse-float v1.0.6
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling lexical-write-float v1.0.6
[INFO] [stderr]    Compiling lzma-rust2 v0.16.5
[INFO] [stderr]    Compiling md-5 v0.11.0
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]    Compiling percent-encoding v2.3.2
[INFO] [stderr]    Compiling serde_json v1.0.150
[INFO] [stderr]    Compiling noodles-core v0.20.0
[INFO] [stderr]    Compiling lexical-core v1.0.6
[INFO] [stderr]    Compiling form_urlencoded v1.2.2
[INFO] [stderr]    Compiling rustix v1.1.4
[INFO] [stderr]    Compiling strum_macros v0.26.4
[INFO] [stderr]    Compiling getrandom v0.4.2
[INFO] [stderr]    Compiling zerofrom v0.1.8
[INFO] [stderr]    Compiling clap_derive v4.6.1
[INFO] [stderr]    Compiling yoke v0.8.3
[INFO] [stderr]    Compiling derive-new v0.6.0
[INFO] [stderr]    Compiling fastrand v2.4.1
[INFO] [stderr]    Compiling zerovec v0.11.6
[INFO] [stderr]    Compiling cmake v0.1.58
[INFO] [stderr]    Compiling serde v1.0.228
[INFO] [stderr]    Compiling regex-automata v0.4.16
[INFO] [stderr]    Compiling potential_utf v0.1.5
[INFO] [stderr]    Compiling derive-new v0.7.0
[INFO] [stderr]    Compiling libdeflate-sys v1.25.2
[INFO] [stderr]    Compiling bzip2-sys v0.1.13+1.0.8
[INFO] [stderr]    Compiling libz-sys v1.1.29
[INFO] [stderr]    Compiling lzma-sys v0.1.20
[INFO] [stderr]    Compiling cexpr v0.6.0
[INFO] [stderr]    Compiling thiserror v1.0.69
[INFO] [stderr]    Compiling clap v4.6.1
[INFO] [stderr]    Compiling ieee754 v0.2.6
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling linear-map v1.2.0
[INFO] [stderr]    Compiling displaydoc v0.2.7
[INFO] [stderr]    Compiling tempfile v3.27.0
[INFO] [stderr]    Compiling tinystr v0.8.3
[INFO] [stderr]    Compiling zerotrie v0.2.4
[INFO] [stderr]    Compiling icu_collections v2.2.0
[INFO] [stderr]    Compiling rsomics-common v0.12.0
[INFO] [stderr]    Compiling icu_locale_core v2.2.0
[INFO] [stderr]    Compiling regex v1.13.1
[INFO] [stderr]    Compiling flate2 v1.1.9
[INFO] [stderr]    Compiling icu_provider v2.2.0
[INFO] [stderr]    Compiling icu_normalizer v2.2.0
[INFO] [stderr]    Compiling icu_properties v2.2.0
[INFO] [stderr]    Compiling libdeflater v1.25.2
[INFO] [stderr]    Compiling noodles-bgzf v0.47.0
[INFO] [stderr]    Compiling noodles-csi v0.56.0
[INFO] [stderr]    Compiling noodles-fasta v0.61.0
[INFO] [stderr]    Compiling idna_adapter v1.2.2
[INFO] [stderr]    Compiling idna v1.1.0
[INFO] [stderr]    Compiling bio-types v1.0.4
[INFO] [stderr]    Compiling url v2.5.8
[INFO] [stderr]    Compiling noodles-sam v0.85.0
[INFO] [stderr]    Compiling noodles-bam v0.89.0
[INFO] [stderr]    Compiling noodles-cram v0.93.0
[INFO] [stderr]    Compiling hts-sys v2.2.1
[INFO] [stderr]    Compiling noodles v0.110.0
[INFO] [stderr]    Compiling noodles-util v0.79.0
[INFO] [stderr]    Compiling rust-htslib v1.0.1
[INFO] [stderr]    Compiling rsomics-bamio v0.8.4 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 54.27s
[INFO] running `Command { std: "docker" "inspect" "80a6ce2b106cdd01aaba439ca962fa9ce5b082b47b95c0a753d24b252bb19c3e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "80a6ce2b106cdd01aaba439ca962fa9ce5b082b47b95c0a753d24b252bb19c3e" "/opt/rustwide/cargo-home/bin/cargo" "+1.99.0-beta.8" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr]    Compiling rsomics-bamio v0.8.4 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 5.10s
[INFO] running `Command { std: "docker" "inspect" "80a6ce2b106cdd01aaba439ca962fa9ce5b082b47b95c0a753d24b252bb19c3e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "80a6ce2b106cdd01aaba439ca962fa9ce5b082b47b95c0a753d24b252bb19c3e" "/opt/rustwide/cargo-home/bin/cargo" "+1.99.0-beta.8" "test" "--frozen", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.17s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/rsomics_bamio-deb34acf28fe0179)
[INFO] [stdout] 
[INFO] [stdout] running 10 tests
[INFO] [stdout] test ring_writer::tests::finish_surfaces_sink_flush_error ... ok
[INFO] [stdout] test indexed::tests::rejects_uncompressed_alignment_input ... ok
[INFO] [stdout] test indexed::tests::opens_bgzf_sam_with_an_appended_bai ... ok
[INFO] [stdout] test ring_writer::tests::eof_block_present ... ok
[INFO] [stdout] test ring_writer::tests::round_trip_single_thread ... ok
[INFO] [stdout] test indexed::tests::opens_alternative_bai_and_queries_records ... ok
[INFO] [stdout] test indexed::tests::visits_cram_records_from_slices ... ok
[INFO] [stdout] test ring_writer::tests::output_identical_across_thread_counts ... ok
[INFO] [stdout] test ring_writer::tests::round_trip_multi_thread ... ok
[INFO] [stdout] test raw::tests::converts_htslib_long_cigar_to_bam_encoding ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 10 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.15s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/batch_write.rs (/opt/rustwide/target/debug/deps/batch_write-b608c6fd31b5e244)
[INFO] [stdout] 
[INFO] [stdout] running 3 tests
[INFO] [stdout] test empty_batches_and_no_batches_are_valid ... ok
[INFO] [stdout] test batched_output_is_byte_identical_to_per_record ... ok
[INFO] [stdout] test batched_output_matches_over_multi_block_file ... ok
[INFO] [stderr]      Running tests/raw_roundtrip.rs (/opt/rustwide/target/debug/deps/raw_roundtrip-188a8aeced900e49)
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 3 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.21s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 13 tests
[INFO] [stdout] test aux_append_remove_replace_roundtrips ... ok
[INFO] [stdout] test alignment_records_encode_to_the_original_payload ... ok
[INFO] [stdout] test invalid_aux_value_does_not_mutate_record ... ok
[INFO] [stdout] test borrowed_record_writes_the_original_payload ... ok
[INFO] [stdout] test clear_flag_bits_only_touches_target_bits ... ok
[INFO] [stdout] test decoded_cigar_rejects_invalid_operations ... ok
[INFO] [stdout] test default_record_is_safe_to_inspect ... ok
[INFO] [stdout] test raw_edit_sets_flag_and_passes_seq_qual_through ... ok
[INFO] [stdout] test readers_reject_a_zero_block_size ... ok
[INFO] [stdout] test borrowed_reader_matches_owned_read ... ok
[INFO] [stdout] test malformed_record_layouts_are_rejected ... ok
[INFO] [stdout] test decoded_cigar_replaces_the_bam_long_cigar_placeholder ... ok
[INFO] [stderr]      Running tests/read.rs (/opt/rustwide/target/debug/deps/read-3e8302b87dd29841)
[INFO] [stdout] test borrowed_reader_handles_multi_block_files ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 13 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.33s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 2 tests
[INFO] [stdout] test single_worker_reads_same_count ... ok
[INFO] [stdout] test reads_header_and_all_records ... ok
[INFO] [stderr]    Doc-tests rsomics_bamio
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 2 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "80a6ce2b106cdd01aaba439ca962fa9ce5b082b47b95c0a753d24b252bb19c3e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "80a6ce2b106cdd01aaba439ca962fa9ce5b082b47b95c0a753d24b252bb19c3e", kill_on_drop: false }`
[INFO] [stdout] 80a6ce2b106cdd01aaba439ca962fa9ce5b082b47b95c0a753d24b252bb19c3e
